Monograph |
Corresponding author: Erlend Fossen ( erlend.f.fossen@ntnu.no ) Academic editor: Mariano Michat
© 2016 Erlend Fossen, Torbjørn Ekrem, Anders Nilsson, Johannes Bergsten.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Fossen EI, Ekrem T, Nilsson AN, Bergsten J (2016) Species delimitation in northern European water scavenger beetles of the genus Hydrobius (Coleoptera, Hydrophilidae). ZooKeys 564: 71-120. https://doi.org/10.3897/zookeys.564.6558
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The chiefly Holarctic Hydrobius species complex (Coleoptera, Hydrophilidae) currently consists of H. arcticus Kuwert, 1890, and three morphological variants of H. fuscipes (Linnaeus, 1758): var. fuscipes, var. rottenbergii and var. subrotundus in northern Europe. Here molecular and morphological data are used to test the species boundaries in this species complex. Three gene segments (COI, H3 and ITS2) were sequenced and analyzed with Bayesian methods to infer phylogenetic relationships. The Generalized Mixed Yule Coalescent (GMYC) model and two versions of the Bayesian species delimitation method BPP, with or without an a priori defined guide tree (v2.2 & v3.0), were used to evaluate species limits. External and male genital characters of primarily Fennoscandian specimens were measured and statistically analyzed to test for significant differences in quantitative morphological characters. The four morphotypes formed separate genetic clusters on gene trees and were delimited as separate species by GMYC and by both versions of BPP, despite specimens of H. f. var. fuscipes and H. f. var. subrotundus being sympatric. H. arcticus and H. f. var. rottenbergii could only be separated genetically with ITS2, and were delimited statistically with GMYC on ITS2 and with BPP on the combined data. In addition, six or seven potentially cryptic species of the H. fuscipes complex from regions outside northern Europe were delimited genetically. Although some overlap was found, the mean values of six male genital characters were significantly different between the morphotypes (p < 0.001). Morphological characters previously presumed to be diagnostic were less reliable to separate H. f. var. fuscipes from H. f. var. subrotundus, but characters in the literature for H. arcticus and H. f. var. rottenbergii were diagnostic. Overall, morphological and molecular evidence strongly suggest that H. arcticus and the three morphological variants of H. fuscipes are separate species and Hydrobius rottenbergii Gerhardt, 1872, stat. n. and Hydrobius subrotundus Stephens, 1829, stat. n. are elevated to valid species. An identification key to northern European species of Hydrobius is provided.
GMYC, species complex, BPP, guide tree, Fennoscandia, morphometrics, Bayesian, genitalia, molecular phylogeny, species boundaries, morphology, cryptic species, integrative taxonomy, DNA barcoding, identification key, taxonomy, checklist
The chiefly Holarctic genus Hydrobius Leach, 1815 (Hydrophilidae, Hydrophilinae) has nine species (
The circumpolar H. fuscipes group poses some severe problems when it comes to species delimitation, by tradition paid most attention to in West Europe so far, but including also three named species in the East Palearctic. In Europe only the two species, Hydrobius fuscipes and H. arcticus Kuwert, 1890, are recognized in current taxonomic works (
Traditionally, however, three morphological variants of Hydrobius fuscipes have been recognized in Europe: H. fuscipes var. fuscipes, H. fuscipes var. subrotundus Stephens, 1829 and H. fuscipes var. rottenbergii Gerhardt, 1872. These taxa have different distributions. H. f. var. rottenbergii is distributed in coastal areas of southern and central parts of Fennoscandia and Central Europe, H. f. var. subrotundus is known from Fennoscandia and Central Europe, while H. f. var. fuscipes has the largest distribution and is found in large parts of the Holarctic region. Hydrobius arcticus is distributed in the northern parts of Fennoscandia and European Russia (
The different variants of H. fuscipes have previously been considered separate species, but based on morphological studies that view has changed over time (e.g.
The most recent study of the species complex involved morphological studies of approximately 400 specimens from Sweden and Finland and argued that the three variants of H. fuscipes are separate species based on morphological differences (
Species-level documentation of biological diversity and analyses of species boundaries have increased with the availability of genetic data and new methodological approaches (
The Generalized Mixed Yule Coalescent (GMYC) model (
The Bayesian species delimitation method BPP (Bayesian Phylogenetics and Phylogeography) as originally presented is a validation method that applies reversible jump Markov chain Monte Carlo iterations (rjMCMC) to estimate the posterior probability of different hypotheses of species delimitation (
The mitochondrial gene cytochrome c oxidase subunit I (COI) is the standard genetic marker used to identify animal species with DNA Barcoding (
The main objective of this study was to statistically test species boundaries in the northern European Hydrobius fuscipes group using both molecular (three gene segments: COI, H3 and ITS2) and morphological data (both external and male genital characters).
For the sake of simplicity, Hydrobius arcticus and the different variants of H. fuscipes will from here on be referred to as “morphotypes” and listed with subspecies terminology.
Adult specimens of the four morphotypes were obtained from expeditions throughout the Palearctic and Nearctic regions, with the most extensive sampling being in Norway and Sweden. The specimens were collected at various localities using an aquatic net in shallow vegetation along the edges of lakes, ponds and pools. The specimens were immediately stored in 70–96% ethanol after capture to keep optimal preservation conditions. Additional specimens from the Palearctic and Nearctic regions were obtained on loan from natural history museums and other institutions in Europe (Table S1 in Suppl. material
Examined type specimens of Hydrobius. † Specimen not examined, an image of the specimen was used in morphological analyses.
Variant of Hydrobius fuscipes | Type | Type locality | Storing institution |
---|---|---|---|
fuscipes (Linnaeus, 1758) | Holotype† | Europe | Linnean Society of London, UK |
subrotundus Stephens, 1829 | Possible syntype | British Isles | Natural History Museum, London, UK |
rottenbergii Gerhardt, 1872 | 3x syntypes | Germany or Poland | Bavarian State Collection of Zoology, Munich, Germany |
In total, 62 H. arcticus, 100 H. f. subrotundus, 97 H. f. rottenbergii and 130 H. f. fuscipes specimens were examined in this study. The specimens used were chosen pseudo-randomly depending on distribution and availability with the intent to cover all morphotypes from most of their distribution area with a clear focus on the morphotypes of Hydrobius in northern Europe. Detailed morphological measurements and molecular analyses were conducted on a subsample of these specimens (approximately 30 of each morphotype, Suppl. material
Most specimens used in the molecular analyses were relatively fresh (0-11 years old) and stored in 70-96% ethanol prior to the extraction; the oldest successfully extracted specimens had been pinned for 15 years before extraction. Whole specimens were used to extract DNA, but lysis was done non-destructively to preserve the exoskeleton for morphological analysis. The second or third abdominal ventrite of the specimens was punctured with sharp sterile forceps to facilitate lysis and diffusion of DNA out of the specimens. The forceps were cleaned between handling of different specimens with DNA AWAY™ Surface Decontaminant (Thermo Scientific, Wilmington, USA) and 80% ethanol. Beetles were placed in 100 µL Lysis Buffer (Mole Genetics, Lysaker, Norway) and 4 µL QIAGEN® Proteinase-K (QIAGEN, Venlo, Netherlands) and incubated overnight at 56 °C for 7-12 hours. The lysate was transferred to sample tubes after lysis and MoleStripsTM DNA Tissue (Mole Genetics) was used to extract DNA using a GeneMole® robot (Mole Genetics). Either 100 µL or 200 µL elution buffer was used for elution; 100 µL elution buffer used for older specimens. A selection of the specimens (n = 5) went through the DNA extraction process twice to be used as controls.
Three presumed unlinked gene segments were analyzed, one protein-coding mitochondrial gene segment (COI), one protein-coding nuclear gene segment (Histone H3; abbr. H3), and one non-functional nuclear rDNA segment (Internal transcribed spacer 2; abbr. ITS2) (Table
Gene | Forward primer | Sequence | Reference |
COI | LCO1490 | 5’-GGTCAACAAATCATAAAGATATTGG-3’ |
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H3 | HexAF | 5’-ATGGCTCGTACCAAGCAGACGGC-3’ |
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ITS2 | CAS5p8sFc | 5’-TGAACATCGACATTTYGAACGCACAT-3’ |
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Gene | Reverse primer | Sequence | Reference |
COI | HCO2198 | 5’-TAAACTTCAGGGTGACCAAAAAATCA-3’ |
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H3 | HexAR | 5’-ATATCCTTGGGCATGATGGTGAC-3’ |
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ITS2 | CAS28sB1d | 5’-TTCTTTTCCTCCSCTTAYTRATATGCTTAA-3’ |
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All PCR reactions were performed with a C1000TM Thermal Cycler (Bio-Rad Laboratories, Foster City, USA). Blank samples with molecular grade water (ddH2O) instead of DNA template were used as control-samples in all PCR-runs. The following PCR conditions were used in the amplification of the COI Barcode segment with the HotStarTaq® mixture: initial denaturation for 5 min at 95 °C; 60 s at 94 °C; 5 cycles of 30 s at 94 °C, 30 s at 45 °C, 60 s at 72 °C; 35 cycles of 30 s at 94 °C, 30 s at 51 °C, 60 s at 72 °C; ending with a final elongation for 5 min at 72 °C. Amplification of the COI Barcode segment with the Ready-To-Go PCR Beads: initial denaturation for 5 min at 95 °C; 42 cycles of 30 s at 95 °C, 30 s at 45 °C, 60 s at 72 °C; ending with a final elongation for 8 min at 72 °C. Amplification of H3 with HotStarTaq® mixture and Ready-To-Go PCR Beads: initial denaturation for 5 min at 95 °C; 40 cycles of 30 s at 95 °C, 30 s at 50 °C, 60 s at 72 °C; ending with a final elongation for 8 min at 72 °C. Amplification of ITS2 with HotStarTaq® mixture and Ready-To-Go PCR Beads: initial denaturation for 5 min at 95 °C; 35 cycles of 40 s at 94 °C, 30 s at 55 °C, 40 s at 72 °C; ending with a final elongation for 7 min and 45 s at 72 °C.
Aliquots of the PCR-products selected for sequencing were purified with illustraTM ExoStarTM 1-Step (GE Healthcare) or with illustraTM ExoProStarTM 1-Step (GE Healthcare) following the producers recommendation. Samples were sequenced in both directions by cycle sequencing technology using dideoxy chain termination/cycle sequencing on ABI 3730XL sequencing machines at Eurofins Genomics (Germany).
In cases where DNA was extracted twice from the same specimens, both replicates were sequenced if successfully amplified with PCR. The replicates were used as controls and were expected to yield the same sequence.
Sequenced specimens are kept as DNA vouchers at their respective institutions, labeled with the IDs listed in Suppl. material
Editing and alignment of sequences
DNA Baser Sequence Assembler v4.10.1.13 (2012, Heracle BioSoft SRL, http://www.DnaBaser.com) was used to assemble and edit DNA sequences. The forward and reverse sequences were automatically assembled by the software and the contig was inspected and edited manually. When base calls were ambiguous, the appropriate International Union of Pure and Applied Chemistry (IUPAC) codes were used to represent this. In a few cases the chromatogram was only readable in one direction. Sequences with very low quality were not used in downstream analysis.
Sequences are available in the BOLD project FENHY (http://www.boldsystems.org/index.php/MAS_Management_OpenProject?code=FENHY) and submitted to GenBank under accession numbers KU380492–KU380737. Additional COI Barcodes were also downloaded from BOLD (
MEGA v6.06 (
Bayesian methods were used to find the phylogenetic relationship between specimens of different morphotypes. Analyses of both single locus datasets and a concatenated dataset were conducted. The concatenated dataset combined all three gene segments (COI, H3 and ITS2), removing any samples that lacked sequences from one or two genes to avoid large sections of missing data in the matrix. Hydrobius convexus was used as outgroup in all phylogenetic analyses.
Bayesian information criterion (BIC) was used within PartitionFinder v1.1.1 (
MrBayes v3.2 (
The maximum likelihood based GMYC model (
The GMYC analyses were conducted in the statistical software R v3.0.3 (
The ultrametric trees, one for each gene segment, were made with BEAST v2.1.3 and corresponding user interface (BEAUti 2) (
The GMYC analyses were conducted with the single-threshold version, since
Comparison and selection of the best models were performed with the method described by
The Bayesian species delimitation methods in BPP v3.0 and BPP v2.2 (
Each theta (Θ, ancestral population size) and tau (τ, species divergence time) parameters in the BPP analyses (both versions) used priors specified with a gamma distribution with mean α/β. Only the root in the species tree (τ0) was given as a tau prior whereas other τ parameters were generated with the Dirichlet distribution with default settings in BPP. α = 1 was used as a diffuse prior in all analyses, while different combinations of β were tested for Θ and τ0. Multiple initial runs with different combinations of β were used to find combinations of β that made the means (α/β) be within an order of magnitude from the posterior estimates of Θ and τ0, as recommended by
All BPP-analyses were run for 100,000 generations with sampling every two generations (nsample = 50,000 and sampfreq = 2), after discarding an initial burn-in of 40,000 generations (burnin = 40,000). Heredity scalars were set to 0.25 for COI and 1.0 for H3 and ITS2. Automatic adjustments of finetune parameters were used while making sure that the acceptance proportions were within the range of 0.2–0.7 as recommended by
Specimens were examined with a Leica MZ16 stereomicroscope (Leica Microsystems, Wetzlar, Germany) in reflected light using the measurement module of the software Leica Application Suite 3.2 (Leica Microsystems).
Detailed morphological measurements were conducted after results from the molecular analyses were obtained. A total of 21 H. arcticus, 33 H. f. subrotundus, 26 H. f. rottenbergii and 33 H. f. fuscipes specimens were measured, selected primarily based on the presence of molecular data, to link morphological and molecular divergence patterns. Some specimens that were not included in the molecular analyses were also measured to increase the sample size, especially specimens of H. arcticus and H. f. rottenbergii. These specimens were selected based on morphology and geographical locality, making sure they were of the correct species/variant. Characters that seemed to have very high intraspecific variation or were prone to high amounts of measurement errors were excluded from statistical analyses. The measurements of the first 10 specimens were repeated at a later stage to detect potential errors and ensure repeatability in measurements. A large selection of presumably diagnostic and informative external body characters were measured and analyzed. Genitalia were dissected in male specimens and genital characters examined and measured at approximately 60x magnification. A total of 15 H. arcticus, 16 H. f. subrotundus, 15 H. f. rottenbergii and 16 H. f. fuscipes had their genitalia measured, including type specimens of H. f. rottenbergii and H. f. subrotundus. For pinned specimens, the genitalia were dissected after softening of the specimens in warm water for 10-20 minutes. A hooked needle was used to bring the genital capsule out from the abdomen, before the genitalia was separated from the genital capsule with two needles while placed in ethanol under a stereomicroscope. The abdomen and genitalia were placed on the same mounting card after measurements were conducted.
A total of 29 characters was examined and measured, 14 male genital characters and 15 external body characters (Suppl. material
Male genital characters (Fig.
Measurements of Hydrobius male genitalia. a Paramere in lateral view. A: width of paramere (character 1.5). Curvature of paramere tip (character 1.6) = A+B b Genitalia in dorsal view. 1: Length of sclerotized part of penis. 2: Width of narrowest part of paramere (character 1.2). 3: Length of paramere (character 1.1). Robustness of paramere (character 1.3) = 3 / 2. Paramere length relative penis length (character 1.4) = 3/1. Images of Hydrobius fuscipes rottenbergii.
The mean of the left and right paramere character were used as one character for characters measured in dorsal view.
1.1) Length of parameres: dorsal view. Measured as the total length from the tip of the paramere to the bottom part of the paramere where it overlaps with the basal piece of the aedeagus.
1.2) Width of parameres: dorsal view. Measured as the width of the paramere at the narrowest part.
1.3) Robustness of parameres: dorsal view. Measured as a ratio between the lengths of the parameres (character 1.1) divided by the narrowest width of paramere (character 1.2). A low value means that the paramere is more robust.
1.4) Ratio between paramere length and penis length: dorsal view. Measured as the length of the paramere (character 1.1) divided by the length of the sclerotized part of the penis.
1.5) Width of paramere: lateral view. Measured as width of the paramere at the narrowest part.
1.6) Curvature of paramere tip: lateral view. Measured as length from dorsal side of the narrowest part of the paramere to a vertical line from the tip of paramere on the ventral side, parallel to the dorsal line.
Body characters:
2.1) Relative position of trichobothria (systematic punctures) in relation to the 3rd and 5th row of elytral serial punctures: previously used to separate variants of H. fuscipes (
Measurement of the relative position of trichobothria on the elytra (character 2.1). Dorsal view of anterior part of the elytra, showing how several trichobothria encountered posterior to the scutellum were measured. Each relative position of a trichobothrium was measured by dividing the length from the 3rd row of serial punctures to the trichobothrium (a) by the length from the 3rd row to the 2nd row (a+b). The same was done with trichobothria in or near the 5th row of serial punctures. Image of Hydrobius fuscipes fuscipes.
2.2) Shape of mesoventral process: previously used to separate H. fuscipes from H. arcticus (
2.3) Color of legs: previously used to separate variants of H. fuscipes (
2.4) Body shape: previously used to separate variants of H. fuscipes (
In order to find a reliable estimate of body size, repeated measurements of the total body length, measured from the anterior margin of the labrum to the posterior elytral apex, were compared to the combined length of elytra and the length of pronotum in 19 specimens. The sum of the elytra and the pronotum lengths was found to be less variable between repeated measurements than the complete body length and was therefore used as a more reliable and reproducible estimate of body size in all analyses. A potential bias towards one side (left or right) of assumed symmetric characters was examined using a Student’s t-test to see if the means of right and left structures were statistically different. A visual comparison of the differences by using a histogram showing the differences between the left and right structure was also conducted.
To test if the morphotypes were significantly different in the measured characters, an analysis of covariance (ANCOVA) was used with log-transformed character values as the response variable, the morphotypes as a predictor variable and a log-transformed estimate of body size as a covariate. The estimated body size was used to control for any confounding allometric relationships between the morphological character and body size. The models were reduced, by comparing the models’ adjusted R^2 values and AIC-values, to only include statistically significant effects, including reduction to an analysis of variance (ANOVA) in cases where body size was non-significant. Post hoc comparison of the morphotypes was performed with Tukey’s HSD (honestly significant difference) test with adjusted p-values. Non-log-transformed variables were used in cases where the models without log-transformed variables had a greater R^2 value than the models with log-transformed variables. Characters that are ratios were not log-transformed, neither did body size in these analyses, as the allometric relationship for ratios are less predictable. A selection of interesting male genital characters were plotted against each other and a Convex Hull (
Additional tables (S2–S10) and figures (S1–S6) are available in Supplementary material
A total of 86 specimens from the four morphotypes was successfully sequenced for at least one gene segment (Table
Number of successfully sequenced gene segments from Hydrobius morphotypes. †COI sequences from BOLD are not included.
Gene segment | Morphotype | Sum | |||
---|---|---|---|---|---|
H. arcticus | H. f. fuscipes | H. f. rottenbergii | H. f. subrotundus | ||
COI | 7 | 29 | 14 | 30 | 80† |
H3 | 9 | 30 | 14 | 31 | 84 |
ITS2 | 9 | 27 | 14 | 29 | 79 |
Specimens with at least one segment | 11 | 30 | 14 | 31 | 86† |
Specimens with all three segments | 5 | 27 | 14 | 29 | 75 |
The alignments were unproblematic as there were very few insertions or deletions (indels) (Table
Basic statistics on gene segments used in molecular analyses of the Hydrobius species complex. Unique sites refer to variable but parsimony uninformative sites. † Only specimens with all three gene segments were included in the concatenated dataset.
COI (incl./excl. outgroup) |
H3 (incl./excl. outgroup) |
ITS2 (incl./excl. outgroup) |
Concatenated dataset †(incl./excl. outgroup) |
|
Length of segment (bp) | 658/658 | 328/328 | 405/405 | 1391/1391 |
Length used in analyses, incl. gaps (bp) | 611/611 | 306/306 | 412/389 | 1329/1306 |
Indels in aligned segment | 0/0 | 0/0 | 3/1 | 3/1 |
Conserved sites (bp) | 446/481 | 247/278 | 338/362 | 1041/1131 |
Variable sites (bp) | 165/130 | 59/28 | 51/27 | 265/175 |
Parsimony informative sites (bp) | 116/113 | 22/20 | 26/26 | 154/149 |
Unique sites (bp) | 49/17 | 37/8 | 25/1 | 111/26 |
A (%) | 30.4/30.4 | 25.7/25.8 | 16.6/16.6 | 25.2/25.2 |
C (%) | 17.3/17.3 | 30.9/30.9 | 29.6/29.6 | 24.1/24.1 |
G (%) | 16.3/16.3 | 24.1/24.0 | 32.5/32.5 | 22.9/22.9 |
T (%) | 36.0/36.0 | 19.3/19.3 | 21.3/21.4 | 27.8/27.8 |
Number of unique haplotypes | 49/48 | 18/17 | 12/11 | 37/36 |
There was large agreement between the best partition schemes and substitution models for the single locus gene segments compared to the concatenated dataset, although for example codon position 3 of H3 is assigned a K80+I model when using H3 data and a K80 model when using the concatenated data (Table S2 in Suppl. material
Up to eleven different genetically divergent clades, one of which is represented by a singleton, were found in the phylogenetic trees, although with different amount of consistency and support between the different gene segments analyzed. Highest resolutions were found in the trees resulting from analyses of COI and the concatenated dataset (Fig.
Majority-rule consensus tree from time-free Bayesian analysis of the concatenated data. Branch support values are posterior probabilities. Samples are labeled with ID-numbers, identified morphotypes and country of origin. Specimens collected in sympatry are also labeled with locality name (Rinnleiret or Motzen). Scale bar indicates expected number of nucleotide substitutions per site. Branches with “\\” have been manually cut. Abbreviations for morphotypes: arc = arcticus, fus = fuscipes, rot = rottenbergii, sub = subrotundus.
Genetically divergent clades and their localities, including corresponding BOLD BINs. Clades primarily found on COI and concatenated tree. † Only COI data available (from
Clade name | Localities | BOLD BIN |
---|---|---|
H. arcticus | Norway and Sweden | BOLD:AAC5901 |
H. f. rottenbergii | Norway and Sweden | BOLD:AAC5901 |
H. f. fuscipes | Norway, Sweden, Finland, Germany, Spain, Russia and Canada | BOLD:AAC5900 |
H. f. subrotundus | Finland, Germany, Sweden, Norway, Italy and UK | BOLD:AAC5899 |
Clade I | Russia and Germany | BOLD:AAP9350 |
Clade II (singleton) | Portugal | BOLD:ACN8707 |
Clade III | Spain and Germany | BOLD:ACB2991 |
Clade IV | Canada | BOLD:AAH2906 |
Clade V | Canada and USA | BOLD:AAH0085 |
Clade VI | Greece † | BOLD:ACO5185 |
Clade VII | Germany † | BOLD:AAC5901 |
Nine monophyletic clades are found in the phylogenetic tree of the concatenated data from MrBayes (Fig.
Ten monophyletic groups, all of which have moderate to strong support, are found in the phylogenetic tree of COI from MrBayes (Fig. S1 in Suppl. material
Clade III, Clade V and H. f. subrotundus form reciprocal monophyletic groups with moderate to strong support in the phylogenetic tree of H3 from MrBayes (Fig. S2 in Suppl. material
Multiple reciprocally monophyletic groups are found in the phylogenetic tree of ITS2 from MrBayes (Fig. S3 in Suppl. material
The three gene trees differ in the relationships between Clade I, Clade II, Clade IV and H. f. fuscipes, H. arcticus and H. f. rottenbergii (Figs S1–S3 in Suppl. material
The ultrametric maximum clade credibility (MCC) tree from BEAST based on COI data (Fig.
Ultrametric (strict clock) maximum clade credibility (MCC) tree used in GMYC analysis of COI. Terminal names and abbreviations as in Fig.
Model selection in GMYC. Only models within 3 Δ AICc shown. Sorted by Δ AICc. All samples are considered the same species under the null coalescent model, whereas all samples are considered separate species under the null Yule model.
Gene segment | Model | Number of clusters | Number of singletons | Log likelihood | AICc | Δ AICc | Akaike weights |
---|---|---|---|---|---|---|---|
COI | 9 species-model | 8 | 1 | 670.5 | -1330.302 | 0.000 | 0.463 |
10 species- model | 9 | 1 | 669.7 | -1328.735 | 1.567 | 0.212 | |
8 species-model | 8 | 0 | 669.6 | -1328.508 | 1.794 | 0.189 | |
H3 | Null coalescent model | 1 | 0 | 504.7 | -1005.209 | 0.000 | 0.174 |
Null Yule model | 0 | 84 | 504.5 | -1004.906 | 0.303 | 0.150 | |
ITS2 | Null Yule model | 0 | 79 | 465.7 | -927.2162 | 0.000 | 0.172 |
Null coalescent model | 1 | 0 | 465.3 | -926.4433 | 0.773 | 0.117 | |
5 species-model | 5 | 0 | 468.1 | -925.3851 | 1.831 | 0.0688 | |
9 species-model | 9 | 0 | 467.7 | -924.5404 | 2.676 | 0.0451 |
The ultrametric MCC tree from BEAST based on H3 data (Fig. S4 in Suppl. material
The ultrametric MCC tree from BEAST based on ITS2 data (Fig.
Ultrametric (strict clock) maximum clade credibility (MCC) tree used in GMYC analysis of ITS2. Terminal names and abbreviations as in Fig.
BPP analyses without guide tree (BPP v3.0) were mostly conclusive and in agreement, independent of prior-combinations, parameter settings, algorithm (0 or 1), multiple runs or a priori sample assignments, and delimited most genetically divergent clades with posterior probabilities of 1.0 (Fig.
Species tree with the largest posterior probability from BPP v3.0 analyses conducted on Hydrobius specimens. Multi-locus data (COI, H3 and ITS2) used with H. convexus included as outgroup. Values above branches indicate range of split posterior probabilities, i.e. the probability for the node representing a speciation event, from four different prior-combinations. Values in red have split probabilities < 1.0. *Clade VII only delimited when specimens from Clade VII were a priori assigned as a potential species separate from H. arcticus and H. f. rottenbergii.
Posterior probabilities (PP) of delimited species from BPP v3.0, based on multi-locus data (COI, H3 and ITS2) from 111 Hydrobius specimens. PP range from four prior-combinations and multiple runs with different starting trees and algorithms (0 vs 1). Species delimited with PP < 0.01 are not reported. †Only delimited when specimens from Clade VII were a priori assigned as a potential separate species from H. arcticus and H. f. rottenbergii.
Delimited species | Posterior probability (range) |
---|---|
H. convexus | 1.0 |
H. arcticus | 1.0 |
H. f. rottenbergii | 1.0 |
H. f. fuscipes | 1.0 |
H. f. subrotundus | 1.0 |
Clade III | 1.0 |
Clade IV | 1.0 |
Clade V | 1.0 |
Clade VI | 1.0 |
Clade VII † | 1.0 |
Clade I | 0.541–0.623 |
Clade II | 0.541–0.623 |
Clade I and Clade II | 0.377–0.459 |
The results from BPP v2.2 with a guide tree were very similar to the results from BPP v3.0, independent of prior-combinations, parameter settings, algorithm (0 or 1), multiple runs, guide tree topologies or a priori sample assignments (Fig. S6 and Table S4 in Suppl. material
Only characters found to be significantly different between morphotypes are reported and discussed here. Measurements are available in Suppl. material
Male genitalia of the Hydrobius morphotypes were generally similar and morphometric measurements of characters overlapped to different degrees between morphotypes (Figs
Width of parameres (in logarithmic scale) in dorsal view was the most informative character and separated all morphotypes from each other, where the morphotypes explained 80.0% of the variation in the character (Table
Morphometric differences between 60 (in a) and 59 (in b) specimens of Hydrobius. Two characters are plotted against each other in each figure with convex hulls used to show overlap in the data between morphotypes. Type specimens and specimens of H. f. subrotundus and H. f. fuscipes collected in sympatry (Rinn = locality Rinnleiret (Norway) and Mot = Motzen (Germany)) are labeled. a Curvature of paramere tip plotted against width of paramere in dorsal view. X-axis is in logarithmic scale b Width of paramere in lateral view plotted against the ratio robustness of paramere in dorsal view. Y-axis is in logarithmic scale.
ANOVA/ANCOVA for effect of body size and morphotypes on different male genital characters in Hydrobius. Only significant effects are shown. df=degrees of freedom. ln = natural logarithm. See Material and Methods for details on character measurements.
Character (unit) | Effect | df | Mean square | F-value | p-value |
---|---|---|---|---|---|
Width of parameres, dorsal view (ln(µm)) | Morphotype | 3 | 0.177 | 79.5 | < 0.001 |
Residuals | 58 | 0.00222 | |||
Robustness of parameres | Morphotype | 3 | 41.9 | 79.8 | < 0.001 |
Residuals | 56 | 0.525 | |||
Ratio between paramere length and penis length | Morphotype | 3 | 0.0990 | 20.9 | < 0.001 |
Residuals | 56 | 0.00474 | |||
Width of parameres, lateral view (ln(µm)) | Morphotype | 3 | 0.122 | 12.6 | < 0.001 |
Residuals | 55 | 0.00965 | |||
Curvature of paramere tip (µm) | Morphotype | 3 | 1008 | 22.1 | < 0.001 |
Residuals | 56 | 104.5 | |||
Length of parameres (ln(µm)) | Morphotype | 3 | 0.0534 | 21.9 | < 0.001 |
ln (body size) | 1 | 0.0122 | 5.03 | 0.0289 | |
Residuals | 55 | 0.00243 |
Two characters, robustness of parameres and ratio between paramere length and penis length, separated H. arcticus and H. f. rottenbergii from H. f. subrotundus and H. f. fuscipes. The morphotypes explained 81.1% of the variation in robustness of parameres (Table
The morphotypes explained 52.8% of the variation in the ratio between paramere length and penis length (Table
Morphometric differences between 60 specimens of Hydrobius. a Differences between morphotype and effect of body size on paramere length. Both axes are in logarithmic scale. Independently fitted lines for each morphotype are shown, slopes not significantly different. Type specimens of H. f. subrotundus and H. f. rottenbergii are labeled b Box- and whisker-plot showing differences between morphotypes on the ratio length of paramere / length of penis. Top and bottom of boxes represent first and third quartile; dark bands represent the second quartile (median); whiskers show the maximum and minimum values not including outliers (white points). Black points represent type specimens.
Hydrobius arcticus is separated from H. f. rottenbergii and H. f. fuscipes is separated from H. f. subrotundus with the character width of parameres in lateral view in logarithmic scale, and the morphotypes explain 40.8% of the variation in the character (Table
The H. f. subrotundus morphotype had a significantly larger curving of the paramere tip than the other morphotypes, and the morphotypes explained 54.2% of the variation in the character (Table
Hydrobius f. rottenbergii had significantly lower length of parameres than the other morphotypes, but body size did also have an effect on the character (Table
All morphotypes except Hydrobius arcticus had a strong or rather strong acute dentiform mesoventral process. Measurements of 10 randomly chosen specimens from each morphotype confirm this, with H. arcticus having higher non-overlapping values than the other morphotypes (Figs
Box- and whisker-plot showing morphometric differences between morphotypes of Hydrobius. Top and bottom of boxes represent first and third quartile; dark bands represent the second quartile (median); whiskers show the maximum and minimum values not including outliers (white points). a Shape of mesoventral process. H. arcticus is the only morphotype with a blunt process (indicated by the higher values) b Relative position of trichobothria in relation to the 3rd and 5th row of elytral serial punctures. The trichobothria of H. f. rottenbergii are positioned closer to the serial punctures than in other morphotypes (indicated by lower values).
Fennoscandian specimens of H. f. rottenbergii had trichobothria positioned close or very close to the elytral serial punctures compared to the other morphotypes that had trichobothria located further into the elytral intervals (Fig.
Comparison of the relative position of trichobothria (red arrows) on the elytra of Hydrobius. A Trichobothria positioned in the intervals between the 2nd and 3rd row of serial punctures, and between the 4th and 5th row. Typical positioning of trichobothria in H. arcticus, H. fuscipes fuscipes and H. f. subrotundus, here represented by a specimen of H. f. fuscipes B Trichobothria positioned in or very close to the 3rd and 5th row of serial punctures, which is characteristic of H. f. rottenbergii.
On average H. f. subrotundus had darker femora and tibiae than the other morphotypes, but some overlap was found between the color of H. f. subrotundus and H. f. fuscipes. Color differences were more consistent for the femora than for the tibiae, although color of the femora often became lighter towards the trochanter. Specimens with entirely dark legs were always of the H. f. subrotundus morphotype, but overlap was found when comparing H. f. subrotundus specimens with less dark legs with the H. f. fuscipes specimens with the darkest legs. On the other hand, entirely yellow legs are common in H. f. fuscipes, but are never found in H. f. subrotundus. Specimens of H. f. subrotundus collected in sympatry with specimens of H. f. fuscipes had darker legs than the H. f. fuscipes specimens. The type specimen of H. f. subrotundus had dark legs, whereas type specimens of other morphotypes had lighter legs.
Both morphotypes and body size had a significant effect on the Elytral Index (EI = length of the elytra / maximum width of elytra), with the best model explaining 51.0% of the variance in EI (Table
Morphometric differences between morphotypes and effect of body size on Elytral Index (EI) of Hydrobius. EI = length of the elytra / maximum width of elytra. 113 specimens measured. Independently fitted lines for each morphotype are shown, slopes not significantly different. Type specimens and specimens of H. f. subrotundus and H. f. fuscipes collected in sympatry (Rinn = locality Rinnleiret (Norway), Mot = Motzen (Germany) and Ola = Öland (Sweden)) are labeled.
ANCOVA for effect of body size and morphotypes on Elytral Index (EI) in Hydrobius. Only significant effects are shown. df=degrees of freedom. See Material and Methods for details on character measurements.
Effect | df | Mean square | F-value | p-value |
---|---|---|---|---|
Morphotype | 3 | 0.0558 | 33.188 | < 0.001 |
Body size | 1 | 0.0212 | 12.615 | < 0.001 |
Residuals | 108 | 0.00168 |
The intercepts of H. f. subrotundus and H. arcticus were significantly different, being approximately 5–7% lower, than the intercepts of H. f. fuscipes and H. f. rottenbergii (Tables S8 and S10 in Suppl. material
The nuclear gene segments H3 and ITS2 had comparatively low genetic variation (Table
The ITS2 results differ from the other gene trees by the placement of H. f. rottenbergii, H. arcticus and Clade IV basally in the tree (Fig. S3 in Suppl. material
Interestingly, a more complex partition scheme and substitution model was also found for the H3 dataset when including as opposed to excluding the outgroup (Table S2 in Suppl. material
The most likely general explanation for the conflicting phylogenetic patterns in the gene trees (Figs S1–S3 in Suppl. material
The most interesting conflict between the gene trees was in the lack of reciprocal monophyly of H. arcticus and H. f. rottenbergii for COI and H3. Specimens belonging to these morphotypes grouped together with almost identical sequences in both the COI and H3 gene trees (Figs S1 and S2), but were placed in moderately supported separate monophyletic groups in the ITS2 gene tree and the tree based on the concatenated dataset (Fig.
Despite having widely different habitats and not being known to occur in sympatry, the H. arcticus and H. f. rottenbergii morphotypes may have had a relatively recent hybridization event resulting in very similar COI sequences. A possible explanation for when this event occurred, although speculative, is related to their habitats at the end of the last ice age (10–14 000 years ago). As the ice cover melted, what was then coastal areas close to the retracting ice had similar environmental conditions as alpine/arctic areas do today (
GMYC results based on COI data (Fig.
The GMYC analyses on the nuclear gene segments were less informative, most likely because of the low variation. This appears to be especially true for the H3 data which was best explained by the null models (Table
The BPP results, both with version 2.2 and v3.0 (Table
The BPP results delimited Clade VII, H. arcticus and H. f. rottenbergii as separate species in all analyses, strongly suggesting that they are different species (Table
Results from BPP v3.0 were very similar to the results from BPP v2.2, probably because the species trees with highest posterior probabilities in BPP v3.0 were very similar to the guide trees used in BPP v2.2 analyses (Figs S5 and S6 in Suppl. material
Overall, both GMYC and BPP suggest that Clades III, IV, V, VI, VII, H. arcticus, H. f. fuscipes, H. f. rottenbergii and H. f. subrotundus are sufficiently genetically divergent to be considered separate species, whereas they do not agree upon whether or not Clades I and II are the same species. BPP uses multi-locus data, is not affected by incomplete lineage sorting and can handle small amounts of hybridization between species (
Several significant differences in genital characters were found between the morphotypes (Table S6 and S9 in Suppl. material
Some overlap was found between at least two of the morphotypes in all characters (Figs
Several of the genital characters examined here are correlated to each other, meaning that the number of independent characters examined is low. For instance, the robustness of parameres is a ratio between the character length of parameres and the character width of paramere in dorsal view. These correlations also make it probable that an outlier in one character will also be an outlier in another character. The relatively low number of specimens measured (approximately 15 of each morphotype, limited by the number of sequenced specimens) make the results more prone to artifacts. However, several of the differences were highly statistically significant (p < 0.001), suggesting that coincidence is not a likely explanation.
Hydrobius f. subrotundus and H. f. fuscipes specimens were collected in sympatry, but grouped nevertheless with specimens of their respective morphotype in all phylogenetic trees (Fig.
Hydrobius arcticus is the morphotype easiest to identify, while H. f. fuscipes can be difficult to separate from H. f. subrotundus. The latter may have led to misidentifications of specimens, especially for specimens outside of northern Europe. Our genetic data indicate the presence of six or seven additional species outside of northern Europe. To enable reliable morphological identification of these, more specimens from a larger geographical range should be analyzed, especially if they are to be described as species new to science.
The relative position of trichobothria is one of the characters
Body shape (EI) has been used to separate H. f. fuscipes from H. f. subrotundus (
The large number of listed synonyms for each species (especially H. fuscipes) makes certain association of morphotypes with nominal species challenging. Type specimens of senior synonyms were examined when available, but we were unable to borrow types of H. arcticus, and could not study the genitalia of the H. f. fuscipes type. The position of trichobothria, shape of mesoventral process and color of legs were as expected for type specimens, suggesting that the correct name have been applied to the different morphotypes analyzed. However, other quantitative measurements of the types were not necessarily concordant with measurements from other specimens of the respective morphotypes. The type of H. f. fuscipes generally grouped together with other H. f. fuscipes specimens, but the H. f. subrotundus type and some of the H. f. rottenbergii types had character values, both on body and genitalia, that were larger or smaller than most of their respective morphotypes (e.g. Fig.
The large number of synonyms must be considered when dealing with the genetically divergent clades (Table
COI barcodes could not distinguish H. f. rottenbergii from H. arcticus, making this an example of where DNA barcoding fails to identify different morphospecies. Using ITS2 as an additional marker will separate these species, however. On the other hand, traditional DNA barcodes can be used to separate all other genetically divergent clades (Fig. S1 in Suppl. material
This study shows that using multiple methods, based on both morphology and molecular data, is important in species delimitation studies. This has also been shown in other integrative taxonomic studies, where using only one method to delimit species can and often will result in erroneous delimitations (e.g.
Overall our results correspond well with the conclusion of
The four Hydrobius morphotypes examined in northern Europe should be regarded as separate species and elevated:
Hydrobius arcticus Kuwert, 1890
Hydrobius fuscipes (Linnaeus, 1758)
Hydrobius rottenbergii Gerhardt, 1872, stat. n.
Hydrobius subrotundus Stephens, 1829, stat. n.
The fact that H. rottenbergii is much more closely related to H. arcticus (based on both genetic data and similarity in male genitalia), the morphotype of which has been regarded as a separate and valid species for the longest time, than to the other H. fuscipes variants clearly indicates that it is a valid species. The consistent difference in the position of trichobothria in the elytral serial punctures rather than in the elytral intervals as in H. fuscipes and H. subrotundus, is further evidence of significant morphological divergence that cannot be disregarded as intraspecific variation since it covaries with 1) the male genitalia of short and broad arcticus-type, 2) the genetic evidence, and 3) the difference in ecological niche being coastal rock pools.
The strongest argument for H. subrotundus being a separate species is the fact that despite being sympatric with H. fuscipes, they are well differentiated clades genetically which covaries with significantly different, albeit overlapping, genitalic and body shape characters as well as partly subdivided ecological niches. This indicates little or no gene flow between the species despite living in sympatry, which rules out treating them as subspecies according to the most commonly used concept (
There is a chance that the names H. subrotundus and H. rottenbergii are inappropriately used for the clades here referred to (genetic data were not retrieved from type material). Type localities are in England for H. subrotundus and in Central Europe for H. rottenbergii and we have shown that specimens that could be associated with these names from Central Europe may represent additional species, genetically distinct. To solve the situation in central as well as southern Europe will require further taxonomic work for sure. However, we consider recognition of four clearly valid species in northern Europe under traditional names the best stimulus for further decrypting the Hydrobius fuscipes complex in the rest of Europe, east Palearctic and the Nearctic. In fact, since Hydrobius fuscipes has for a long time been suspected or even known to be a species complex by Hydrophilid-workers, yet still not solved or moved further to a solution, indicates that it is a multifaceted problem that may need to be solved step by step. Future studies benefit from the possibility of sequencing DNA fragments from old type material and in this way match type specimens with appropriate genetic groups and will show if alternative names should be applied. These comparisons in combination with conducting morphological analyses of the genetically divergent clades not present in northern Europe (this study;
1 | Mesoventral process blunt, angle >100° (Fig. |
H. arcticus |
– | Mesoventral process acute and dentiform, angle <100° (Fig. |
2 |
2 | Trichobothria on anterior half of elytra situated in, or very close to, the 3rd and 5th row of elytral serial punctures (Fig. |
H. rottenbergii |
– | Trichobothria on anterior half of elytra situated in the intervals between the 2nd and 3rd, and between the 4th and 5th row of serial punctures (Fig. |
3 |
3 | Body shape generally compact and shorter (Elytral length/width = 1.14–1.33, Fig. |
H. subrotundus |
– | Body shape generally more elongate (Elytral length/width = 1.25–1.40, Fig. |
H. fuscipes |
We would like to thank Frode Ødegaard and Oddvar Hanssen (NINA), Vladimir Gusarov (UiO), Christine Taylor (NHM London), Lars Hendrich (ZSM), Jyrki Muona and Heidi Viljanen (Helsinki), Alexey Solodovnikov and Jan Pedersen (Copenhagen), Stephan Blank (SDEI), Robert Bergersen and Arne Nilssen (UiT), Karstein Hårsaker and Dag Dolmen (NTNU VM), Karin Ulmen and Dirk Ahrens (Koenig Museum, Bonn), David Bilton, and Steffen Roth and Bjarte Henry Jordal (UiB) for lending us specimens from their respective institutions and/or private collections. A special thanks to Lars Hendrich and ZSM for making their HydrobiusCOI sequences available to us and for depositing reference material in the NTNU University Museum collection. We also thank Martin Fikáček and several reviewers and editors for their constructive comments.
Specimen information
Data type: specimen data
Explanation note: Excel file containing information (locality data, voucher info, gender, BOLD ID) about all specimens that where measured and/or sequenced.
Additional morphological characters
Data type: Word file
Explanation note: Word file containing a list and descriptions of additional morphological characters that were measured. Contains 11 external body and 8 male genital characters.
Supplementary tables and figures
Data type: Tables and figures
Explanation note: Additional tables (S1-S10) and figures (S1-S6). Phylogenetic trees, BPP results, post-hoc comparisons of morphological characters etc.
Morphological dataset
Data type: Morphological measurements
Explanation note: Excel file containing the complete morphological measurements. Includes a second data sheet with non-abbreviated variables and units for the measurements.