Research Article |
Corresponding author: Yoshihiro Fujiwara ( fujiwara@jamstec.go.jp ) Academic editor: Greg Rouse
© 2019 Yoshihiro Fujiwara, Naoto Jimi, Paulo Y.G. Sumida, Masaru Kawato, Hiroshi Kitazato.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Fujiwara Y, Jimi N, Sumida PYG, Kawato M, Kitazato H (2019) New species of bone-eating worm Osedax from the abyssal South Atlantic Ocean (Annelida, Siboglinidae). ZooKeys 814: 53-69. https://doi.org/10.3897/zookeys.814.28869
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A new species of bone-eating annelid, Osedax braziliensis sp. n., found in a sunken whale carcass at a depth of 4,204 m at the base of the São Paulo Ridge in the South Atlantic Ocean off the Brazilian coast is described. The organism was retrieved using the human-occupied vehicle Shinkai 6500 during the QUELLE 2013 expedition. This is the 26th species of the genus and the first discovery from the South Atlantic Ocean, representing the deepest record of Osedax worldwide to date. This species morphologically resembles Osedax frankpressi but is distinguished by the presence of a yellow bump or patch behind the prostomium and its trunk length. Molecular phylogenetic analysis using three genetic markers (COI, 16S, and 18S) showed that O. braziliensis sp. n. is distinct from all other Osedax worms reported and is a sister species of O. frankpressi.
Polychaeta , São Paulo Ridge, taxonomy, whale-fall ecosystem
Whale falls provide an extensive food supply to the oligotrophic deep-sea environments and harbour a unique biological assemblage, which is considered a “whale-fall ecosystem” (
One of the most unique organisms that has appeared in the whale-fall environment is an annelid polychaete of genus Osedax Rouse, Goffredi & Vrijenhoek, 2004 (Annelida, Siboglinidae), commonly known as bone-eating worms, discovered in whale carcasses in Monterey Bay (
To the best of our knowledge, 25 Osedax species have been described to date, and some additional undescribed species were reported from the West and East Pacific, North and South Atlantic, Mediterranean, Sub-Antarctic, and Antarctic (
In 2013, the Iatá-Piúna Expedition, a collaborative scientific cruise between Japan and Brazil, was conducted within the framework of the around-the-world research cruise Quelle 2013 (Quest for the Limit of Life) of Japan Agency for Marine-Earth Science and Technology (JAMSTEC) using the HOV Shinkai 6500 (
Here we report a new species of Osedax collected from the South Atlantic at the deepest point recorded for this genus. Morphological and molecular phylogenetic characteristics are described.
Whale vertebrae harbouring Osedax worms were collected at a depth of 4,204 m at the base of the São Paulo Ridge (28°31.12'S, 41°39.41'W), southwest Atlantic Ocean during the HOV Shinkai 6500 dives on April 24, 2013 (dive #1334), and April 26, 2013 (dive #1336), in the YK13-04 leg1 cruise using R/V Yokosuka (Figs
Whale skeleton discovered at a depth of 4,204 m in the South Atlantic Ocean. A Sunken whale skeleton of the Atlantic minke whale (Balaenoptera bonaerensis). Seven vertebrae are visible in this field of view. Osedax braziliensis sp. n. had colonised the first two bones on the right B Close-up view of a vertebra colonized by O. braziliensis sp. n. Galatheid crabs (Munidopsis spp.), amphipods (Stephonyx sp.), and gastropods (Rubyspira sp.) were also seen on and around the bones.
Whole bodies of Osedax worms (n = 21) were fixed with 2.5% glutaraldehyde in filtered seawater for 24 h and preserved in filtered seawater with 10 mM sodium azide at 4 °C. Samples were then washed in filtered seawater and fixed with 2% osmium tetroxide in filtered seawater for 2 h at 4 °C. For scanning electron microscopic observation, each sample was rinsed with distilled water and incubated with 1% aqueous tannic acid (pH 6.8) for 1 h for conductive staining. These samples were again washed with distilled water and treated with 1% aqueous osmium tetroxide for 1 h. The worms were dehydrated in a graded ethanol series and critical point-dried using a JCPD-5 critical point dryer (JEOL, Akishima, Japan). The samples were coated with osmium using a POC-3 osmium plasma coater (MEIWAFOSIS Co., Osaka, Japan). The coated tissues were then observed using a JSM-6700F field-emission scanning electron microscope (JEOL) at an acceleration voltage of 5 kV.
DNA was extracted from the root tissues of nine the Osedax worms. To reduce surface contaminants, each tissue sample was thoroughly washed in autoclaved and filtered (0.22 µm) seawater. DNA extraction from tissue samples was conducted separately using the DNeasy Tissue Kit (Qiagen Japan, Tokyo, Japan), following the instruction provided by the manufacturer.
PCR amplifications were conducted using an Ex Taq PCR kit (TaKaRa, Kyoto, Japan) for three different molecular markers: cytochrome c oxidase subunit I (COI), 16S rRNA (16S), and 18S rRNA (18S). Two oligonucleotide primers (0.2 µM each) and <1 µg of DNA template were added to the reaction mixtures. Thermal cycling was performed as follows: denaturing at 96 °C for 20 s, annealing at 55 °C for 45 s, and extension at 72 °C for 2 min for a total of 35 cycles. The oligonucleotide primer sequences used for the PCR amplification are shown in Table
Primer | Target gene | Sequence (5'–3') | Application | Reference |
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P_CO1f | COI | TCMACTAATCAYAARGAYATTGGNAC | PCR, Sequencing |
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P_CO1r | COI | CCDCCTAGWCCTARRAARTGTTGNGG | PCR, Sequencing |
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Euk_42F | 18S rRNA | CTCAARGAYTAAGCCATGCA | PCR, Sequencing |
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Euk_1520R | 18S rRNA | CYGCAGGTTCACCTAC | PCR, Sequencing |
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Euk_555F | 18S rRNA | AGTCTGGTGCCAGCAGCCGC | Sequencing (internal) |
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Euk_555R | 18S rRNA | GCGGCTGCTGGCACCAGACT | Sequencing (internal) (Complement of Euk_555F) | Modified from |
Euk_1269R | 18S rRNA | AAGAACGGCCATGCACCAC | Sequencing (internal) |
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16SarL | 16S rRNA | CGCCTGTTTAACAAAAACAT | PCR, Sequencing |
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16SbrH | 16S rRNA | CCGGTCTGAACTCAGATCACGT | PCR, Sequencing |
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Partial sequences of the COI, 16S, and 18S genes were analysed using the gapped-BLAST search algorithm (
List of operational taxonomic units included in the phylogenetic analysis, together with accession numbers in DDBJ.
Minimum genetic distances based on Kimura 2 parameters (K2P) model were calculated between Osedax species using MEGA7 software (
Osedax
sp. nov.:
Holotype: NMST-Pol H-685, trunk 14 mm long, 2 mm wide, female, 4,203 m depth, 26 April 2013, collected by YF, DDBJ No. LC381421, LC381422, LC381424. Paratypes (14 specimens): NSMT-Pol P-686–690 and JAMSTEC-1130038806, 1130039105, 1130039113, 1130039116, 1130039146, 1130039163, 11 specimens, female, 24 and 26 April 2013, collected by YF, DDBJ No. LC381777, LC381766, LC381767, LC381768, LC381769, LC381771; JAMSTEC-1130057454, 1130057457, 1130057458, 3 specimens, male, 26 April 2013, collected by YF.
São Paulo Ridge, Brazil, 4,204 m depth.
Trunk length long. Gelatinous hemispherical tube encases trunk and base of palps. Yellow bump or patch present (absent in some specimens). Pinnules on inner margin of palps. Root lobulated without branching.
Genetic data (COI, 16S, and 18S) deposited in DDBJ (LC106303, LC381421, LC381422, LC381424, and LC381765–LC381787). Trunk length up to 22 mm, width at collar 0.5 mm, reddish purple while alive and whitish after fixation (Fig.
Photographs of unfixed Osedax braziliensis sp. n. A Palps (pa), trunk (tr) and a gelatinous hemispherical tube (tu)B lateral view of palps (pa), trunk (tr), ovary (o), and root (r)C ventral view of palps (pa) with pinnules (pi) and trunk (tr). Dwarf males (m) inhabit a gelatinous tube (tu), and D ventro-lateral view of an individual possessing a yellow bump (b) present behind prostomium E Ventral view of holotype (NMST-Pol H-685) possessing a yellow patch (pt)F Ventral view of an individual without yellow bump.
Dwarf male about 250 µm in length (n = 20), fusiform, whitish while alive, prostomium and pygidium rounded, no appendage organs; posterior hooks present, two pairs (5–7 hooks per bundle) arranged in three rows (Figs
This species is named after the type locality, Brazil. This name is an adjective used as a substantive in the genitive case.
Only known from a whale carcass of the type locality. São Paulo Ridge, off Brazilian coast, 4,204 m depth.
The final lengths of the aligned sequences were 1,004 bp (COI), 486 bp (16S), and 1,604 bp (18S). The phylogenetic position of O. braziliensis sp. n. determined from our ML analysis recovered, with total support, a distinct species from that of all other Osedax species reported (Fig.
Phylogenetic placement of Osedax braziliensis sp. n. based on nucleotide sequences on the concatenated COI, 16S, and 18S markers, using maximum likelihood. Scale bar represents 0.1 nucleotide substitutions per sequence position. Only bootstrap values greater than 50 are shown for each branch. Osedax braziliensis sp. n. is boxed.
This species resembles Osedax frankpressi in the pinnules distributed only at the inner margin of palps, lobulated root structure without branching, gelatinous hemispherical tube, and dwarf males (
COI divergence values (Kimura 2 parameters) between Osedax species and OTUs.
OTU | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | |
1 | Osedax frankpressi | ||||||||||||||||||||||||||||||||||
2 | Osedax sp. ‘sagami8’ | 0.230 | |||||||||||||||||||||||||||||||||
3 | Osedax tiburon | 0.206 | 0.188 | ||||||||||||||||||||||||||||||||
4 | Osedax sp. ‘sagami7’ | 0.207 | 0.221 | 0.241 | |||||||||||||||||||||||||||||||
5 | Osedax knutei | 0.238 | 0.167 | 0.231 | 0.230 | ||||||||||||||||||||||||||||||
6 | Osedax sp. ‘sagami4’ | 0.193 | 0.214 | 0.214 | 0.162 | 0.212 | |||||||||||||||||||||||||||||
7 | Osedax mucofloris | 0.198 | 0.224 | 0.209 | 0.204 | 0.190 | 0.214 | ||||||||||||||||||||||||||||
8 | Osedax antarcticus | 0.209 | 0.209 | 0.218 | 0.235 | 0.211 | 0.201 | 0.255 | |||||||||||||||||||||||||||
9 | Osedax talkovici | 0.225 | 0.219 | 0.234 | 0.244 | 0.214 | 0.220 | 0.220 | 0.267 | ||||||||||||||||||||||||||
10 | Osedax randyi | 0.207 | 0.219 | 0.244 | 0.006 | 0.233 | 0.165 | 0.209 | 0.231 | 0.238 | |||||||||||||||||||||||||
11 | Osedax crouchi | 0.209 | 0.213 | 0.180 | 0.178 | 0.196 | 0.177 | 0.203 | 0.205 | 0.221 | 0.180 | ||||||||||||||||||||||||
12 | Osedax sp. ‘MB16’ | 0.207 | 0.230 | 0.253 | 0.057 | 0.219 | 0.178 | 0.212 | 0.240 | 0.236 | 0.059 | 0.175 | |||||||||||||||||||||||
13 | Osedax sigridae | 0.192 | 0.198 | 0.190 | 0.214 | 0.207 | 0.207 | 0.230 | 0.212 | 0.215 | 0.208 | 0.188 | 0.217 | ||||||||||||||||||||||
14 | Osedax lehmani | 0.193 | 0.229 | 0.211 | 0.178 | 0.223 | 0.175 | 0.178 | 0.264 | 0.202 | 0.175 | 0.200 | 0.175 | 0.195 | |||||||||||||||||||||
15 | Osedax ventana | 0.193 | 0.187 | 0.165 | 0.217 | 0.196 | 0.208 | 0.225 | 0.221 | 0.220 | 0.222 | 0.155 | 0.222 | 0.207 | 0.228 | ||||||||||||||||||||
16 | Osedax roseus | 0.172 | 0.209 | 0.201 | 0.209 | 0.230 | 0.168 | 0.206 | 0.196 | 0.226 | 0.201 | 0.222 | 0.211 | 0.201 | 0.191 | 0.203 | |||||||||||||||||||
17 | Osedax lonnyi | 0.230 | 0.187 | 0.236 | 0.206 | 0.204 | 0.185 | 0.227 | 0.168 | 0.233 | 0.208 | 0.188 | 0.200 | 0.209 | 0.222 | 0.201 | 0.195 | ||||||||||||||||||
18 | Osedax braziliensis sp. n. | 0.117 | 0.203 | 0.203 | 0.184 | 0.211 | 0.217 | 0.196 | 0.193 | 0.236 | 0.183 | 0.206 | 0.190 | 0.187 | 0.217 | 0.198 | 0.170 | 0.214 | |||||||||||||||||
19 | Osedax rubiplumus | 0.190 | 0.211 | 0.222 | 0.195 | 0.230 | 0.161 | 0.230 | 0.206 | 0.224 | 0.203 | 0.183 | 0.203 | 0.203 | 0.190 | 0.228 | 0.185 | 0.193 | 0.211 | ||||||||||||||||
20 | Osedax rogersi | 0.230 | 0.187 | 0.236 | 0.206 | 0.204 | 0.185 | 0.227 | 0.168 | 0.233 | 0.208 | 0.188 | 0.200 | 0.209 | 0.222 | 0.201 | 0.195 | 0.000 | 0.214 | 0.193 | |||||||||||||||
21 | Osedax sp. ‘mediterranea’ | 0.214 | 0.241 | 0.212 | 0.206 | 0.264 | 0.217 | 0.241 | 0.259 | 0.203 | 0.201 | 0.227 | 0.190 | 0.155 | 0.206 | 0.230 | 0.192 | 0.238 | 0.199 | 0.241 | 0.238 | ||||||||||||||
22 | Osedax packardorum | 0.201 | 0.216 | 0.208 | 0.185 | 0.237 | 0.170 | 0.181 | 0.258 | 0.191 | 0.177 | 0.219 | 0.199 | 0.201 | 0.082 | 0.219 | 0.196 | 0.227 | 0.219 | 0.196 | 0.227 | 0.196 | |||||||||||||
23 | Osedax bryani | 0.209 | 0.213 | 0.180 | 0.178 | 0.196 | 0.177 | 0.203 | 0.205 | 0.221 | 0.180 | 0.000 | 0.175 | 0.188 | 0.200 | 0.155 | 0.222 | 0.188 | 0.206 | 0.183 | 0.188 | 0.227 | 0.219 | ||||||||||||
24 | Osedax nordenskjoeldi | 0.203 | 0.190 | 0.002 | 0.244 | 0.230 | 0.217 | 0.209 | 0.218 | 0.237 | 0.246 | 0.177 | 0.255 | 0.188 | 0.214 | 0.163 | 0.204 | 0.238 | 0.201 | 0.220 | 0.238 | 0.214 | 0.211 | 0.177 | |||||||||||
25 | Osedax westernflyer | 0.233 | 0.004 | 0.188 | 0.221 | 0.170 | 0.211 | 0.224 | 0.212 | 0.222 | 0.219 | 0.216 | 0.230 | 0.200 | 0.229 | 0.193 | 0.206 | 0.193 | 0.205 | 0.211 | 0.193 | 0.244 | 0.216 | 0.216 | 0.190 | ||||||||||
26 | Osedax ryderi | 0.209 | 0.213 | 0.180 | 0.178 | 0.196 | 0.177 | 0.203 | 0.205 | 0.221 | 0.180 | 0.000 | 0.175 | 0.188 | 0.200 | 0.155 | 0.222 | 0.188 | 0.206 | 0.183 | 0.188 | 0.227 | 0.219 | 0.000 | 0.177 | 0.216 | |||||||||
27 | Osedax sp. ‘sagami6’ | 0.193 | 0.175 | 0.185 | 0.238 | 0.152 | 0.219 | 0.203 | 0.203 | 0.225 | 0.233 | 0.175 | 0.224 | 0.221 | 0.236 | 0.153 | 0.222 | 0.178 | 0.198 | 0.220 | 0.178 | 0.233 | 0.224 | 0.175 | 0.183 | 0.177 | 0.175 | ||||||||
28 | Osedax jabba | 0.228 | 0.172 | 0.222 | 0.203 | 0.206 | 0.251 | 0.195 | 0.238 | 0.228 | 0.209 | 0.216 | 0.228 | 0.222 | 0.241 | 0.188 | 0.220 | 0.213 | 0.208 | 0.243 | 0.213 | 0.227 | 0.227 | 0.216 | 0.219 | 0.172 | 0.216 | 0.206 | |||||||
29 | Osedax docricketts | 0.198 | 0.172 | 0.183 | 0.236 | 0.157 | 0.219 | 0.206 | 0.206 | 0.225 | 0.230 | 0.170 | 0.227 | 0.218 | 0.233 | 0.148 | 0.222 | 0.176 | 0.201 | 0.220 | 0.176 | 0.236 | 0.222 | 0.170 | 0.180 | 0.175 | 0.170 | 0.008 | 0.203 | ||||||
30 | Osedax priapus | 0.217 | 0.191 | 0.186 | 0.206 | 0.210 | 0.180 | 0.230 | 0.211 | 0.231 | 0.209 | 0.160 | 0.195 | 0.155 | 0.195 | 0.183 | 0.198 | 0.178 | 0.211 | 0.219 | 0.178 | 0.175 | 0.227 | 0.160 | 0.184 | 0.196 | 0.160 | 0.191 | 0.198 | 0.188 | |||||
31 | Osedax sp. ‘sagami5’ | 0.193 | 0.214 | 0.207 | 0.222 | 0.204 | 0.206 | 0.212 | 0.228 | 0.226 | 0.222 | 0.198 | 0.224 | 0.122 | 0.203 | 0.209 | 0.217 | 0.219 | 0.203 | 0.198 | 0.219 | 0.183 | 0.214 | 0.198 | 0.204 | 0.217 | 0.198 | 0.212 | 0.214 | 0.207 | 0.180 | ||||
32 | Osedax sp. ‘sagami3’ | 0.196 | 0.206 | 0.242 | 0.209 | 0.219 | 0.181 | 0.217 | 0.220 | 0.186 | 0.201 | 0.206 | 0.209 | 0.211 | 0.194 | 0.234 | 0.187 | 0.224 | 0.199 | 0.176 | 0.224 | 0.214 | 0.202 | 0.206 | 0.242 | 0.209 | 0.206 | 0.229 | 0.238 | 0.229 | 0.241 | 0.225 | |||
33 | Osedax japonicus | 0.201 | 0.238 | 0.220 | 0.175 | 0.236 | 0.172 | 0.173 | 0.216 | 0.204 | 0.172 | 0.188 | 0.165 | 0.206 | 0.149 | 0.206 | 0.185 | 0.211 | 0.188 | 0.203 | 0.211 | 0.206 | 0.141 | 0.188 | 0.223 | 0.238 | 0.188 | 0.213 | 0.213 | 0.211 | 0.201 | 0.200 | 0.212 | ||
34 | Osedax deceptionensis | 0.214 | 0.230 | 0.236 | 0.273 | 0.235 | 0.271 | 0.246 | 0.234 | 0.221 | 0.273 | 0.242 | 0.270 | 0.209 | 0.233 | 0.236 | 0.241 | 0.236 | 0.211 | 0.250 | 0.236 | 0.239 | 0.233 | 0.242 | 0.236 | 0.236 | 0.242 | 0.243 | 0.261 | 0.240 | 0.240 | 0.248 | 0.251 | 0.230 |
We thank all the participants of the Iatá-Piúna Expedition, the captain and crew of the R/V Yokosuka, and the operation team of HOV Shinkai 6500 for organising the cruise and conducting the diving research and sampling. We also thank Mr Katsuyuki Uematsu (Marine Work Japan, Ltd.) for SEM observations and Ayaka Takayama and Yoshimi Umezu (JAMSTEC) for research assistance. PYGS benefitted from a BIOTA FAPESP Grant number 2011/50185-1. We would additionally like to thank Editage (www.editage.jp) for English language editing.