Research Article |
Corresponding author: Wilson J. E. M. Costa ( wcosta@acd.ufrj.br ) Academic editor: Devin Bloom
© 2018 Wilson J. E. M. Costa, Pedro F. Amorim, José Leonardo O. Mattos.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Costa WJEM, Amorim PF, Mattos JLO (2018) Cryptic species diversity in the Hypsolebias magnificus complex, a clade of endangered seasonal killifishes from the São Francisco River basin, Brazilian Caatinga (Cyprinodontiformes, Aplocheilidae). ZooKeys 777: 141-158. https://doi.org/10.3897/zookeys.777.25058
|
A great diversity of animal species adapted to life in the semi-arid Caatinga of northeastern Brazil, including seasonal killifishes, has been reported in the last three decades. More recently, field and molecular data have shown a high occurrence of cryptic species. The killifish group herein analysed, the Hypsolebias magnificus species complex, is endemic to the middle and southern portion of the Caatinga, occupying about 120 km along the floodplains of the middle São Francisco River and some adjacent tributaries. Species of this complex are rare and presently considered threatened with extinction, being uniquely found in pools protected by trees and bushes. Single-locus delimitation methods were used to test species limits of populations displaying different colour patterns along the whole distribution of the complex. All analyses consistently supported the three nominal species and two new, herein described: H. gardneri Costa, sp. n., from the floodplains of the middle São Francisco River and H. hamadryades Costa, sp. n., from the Gorotuba River floodplains. The phylogenetic analysis highly supports H. hamadryades as sister to a clade comprising H. gardneri and H. harmonicus. Our field observations suggest that H. hamadryades is a miniature species. This study indicates that the H. magnificus complex comprises cryptic species apparently endemic to small areas and extremely vulnerable to environmental changes, deserving high concern.
Biodiversity, conservation, molecular taxonomy, species delimitation, systematics
Recent studies on the fauna of the Caatinga, a biogeographical province of northeastern Brazil, have revealed a high diversity of species adapted to survive in semi-arid conditions, including small terrestrial vertebrates (
Hypsolebias Costa, 2006 is the most species rich and morphologically diverse seasonal killifish genus in the Caatinga, where it is represented by two clades highly supported by morphological and molecular data (
The first species of HMC to be described was H. magnificus, collected in the São Francisco River floodplains near the village of Mocambinho (
Specimens were captured with small dip nets (40 × 30 cm) and were euthanized soon after collection, using a buffered solution of tricaine methanesulfonate (MS-222) at a concentration of 250 mg/l, for a period of about 10 minutes (i.e. until opercular movements ceased). Representative live specimens were kept alive for about 24 hours, photographed, and then euthanized as described above. Specimens were fixed in 10 % formalin for a period of 10 days, and then transferred to 70 % ethanol, except for those used in the molecular analysis, fixed and preserved in 98 % ethanol. Collections were made with permits provided by ICMBio (Instituto Chico Mendes de Conservação da Biodiversidade; permit numbers: 34270-4, 20618-1, 57099-1) and methods for euthanasia were approved by CEUA-CCS-UFRJ (Ethics Committee for Animal Use of Federal University of Rio de Janeiro; permit number: 01200.001568/2013-87). Material is deposited in the ichthyological collections of: Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro (UFRJ) and Centro de Ciências Agrárias e Ambientais, Universidade Federal do Maranhão, Chapadinha (CICCAA). In lists of material, the abbreviation C&S indicates specimens prepared for osteological analysis and preserved in glycerine (see below), and DNA indicates specimens fixed and preserved in 98% ethanol. List of specimens used in the molecular analysis and their respective GenBank accession numbers appears in Table
List of specimens used in the molecular analysis, with their respective catalogue numbers, coordinates of the collecting site, and GenBank accession numbers for cytb sequences.
Species | Catalogue number | Coordinates | Cytb |
---|---|---|---|
Hypsolebias carlettoi | UFRJ 6780.2 | 14°13'42"S, 42°55'12"W | MH048856 |
Hypsolebias fulminantis | UFRJ 6726.1 | 14°12'21"S, 42°45'42"W | MH048854 |
Hypsolebias gardneri | UFRJ 6796.1 | 14°17'39"S, 43°42'32"W | MH048861 |
Hypsolebias gardneri | UFRJ 6796.3 | 14°17'39"S, 43°42'32"W | MH048862 |
Hypsolebias gardneri | UFRJ 6796.4 | 14°17'39"S, 43°42'32"W | MH048863 |
Hypsolebias hamadryades | UFRJ 11473.1 | 15°48'06"S, 43°19'19"W | MH048860 |
Hypsolebias hamadryades | UFRJ 11473.2 | 15°48'06"S, 43°19'19"W | MH048859 |
Hypsolebias hamadryades | UFRJ 11473.3 | 15°48'06"S, 43°19'19"W | MH048858 |
Hypsolebias hamadryades | UFRJ 11473.4 | 15°48'06"S, 43°19'19"W | MH048857 |
Hypsolebias harmonicus | UFRJ 6705.3 | 13°15'42"S, 43°31'00"W | MH048864 |
Hypsolebias harmonicus | UFRJ 6705.4 | 13°15'42"S, 43°31'00"W | MH048865 |
Hypsolebias hellneri | UFRJ 6700.2 | 15°04'50"S, 44°04'40"W | MH048855 |
Hypsolebias magnificus | UFRJ 6712.1 | 14°55'20"S, 43°29'56"W | MH048866 |
Hypsolebias magnificus | UFRJ 6712.2 | 14°55'20"S, 43°29'56"W | MH048867 |
Hypsolebias picturatus | UFRJ 6708.1 | 11°28'03"S, 43°17'10"W | MH048868 |
Descriptions of colouration in living fish were based on photographs of both sides of individuals. Photographs of at least two males and two females were taken in small aquaria about 24 hours after collection. Additional direct observations were made with fish in small transparent plastic bottles just after collection. Measurements and counts follow
Total genomic DNA was extracted from muscle tissue of the right side of the caudal peduncle using the DNeasy Blood & Tissue Kit (Qiagen) according to the manufacturer instructions. To amplify a fragment of the mitochondrial DNA gene cytochrome b (cytb), we used the primers L14724 and H15149 (
Analyses were performed with a cytb fragment (463 bp), which has been efficiently used for delimitating cryptic species of different aplocheiloid killifish groups (
BEAST analysis generated a tree with most branches supported by high posterior probability values (0.99–1; Figure
Holotype.UFRJ 11859, male, 36.9 mm SL; Brazil: Bahia state: Malhada municipality: temporary pool near road BR-030, about 8 km NE of the village of Malhada, São Francisco River floodplains, 14°17'39"S, 43°42'32"W, altitude about 440 m above sea level (a.s.l.); W. J. E. M. Costa et al., 31 January 2010. Paratypes.UFRJ 6797, 3 males, 29.7–36.1 mm SL, 2 females, 27.9–30.0 mm SL; UFRJ 11860, 2 males, 30.6–33.0 mm SL, 2 females, 26.6–27.9 mm SL (C&S); UFRJ 6796, 3 males, 32.6–36.8 mm SL, 4 females, 26.5 – 29.3 mm SL (DNA); CICCAA02038, 2 males, 32.9–33.6 mm SL; all collected with holotype.
Hypsolebias gardneri differs from all other species of the H. magnificus complex, except H. harmonicus, by the following combination of character states relative to the male colour pattern: anterior part of the flank with three dark greenish grey bars (vs. dark greenish grey bars absent in H. hamadryades); dorsal fin with transverse blue stripes and one basal row of blue dots (vs. rows of blue dots on the whole fin in H. picturatus); anal fin with dots and short vermiculate marks irregularly arranged on the anterior part of the fin (vs. dots on the entire fin in H. picturatus, and transverse blue stripes on most fin in H. magnificus and H. hamadryades); and anterior half of caudal fin with transverse rows of blue dots, posterior half with transverse blue bars (vs. blue bars on most fin in H. magnificus and dots on the entire fin in H. picturatus). Hypsolebias gardneri is distinguished from H. harmonicus by having the caudal fin with 23 or 24 rays, subtruncate and longer in males, measuring 34.5–36.4% SL (vs. with 22 or 22 rays, round, measuring 31.2–33.2% SL), and from H. hamadryades by having the dorsal-fin origin just posterior to anal-fin origin in males (vs. anterior) and between the base of 3rd and 5th anal-fin rays in females (vs. between the base of 1st and 3rd anal-fin rays), and the second proximal radial of the dorsal fin between neural spines of the 7th and 8th vertebrae in males (vs. between neural spines of the 5th and 7th).
Morphometric data appear in Table
Holotype | Paratypes | ||
---|---|---|---|
male | males (6) | females (4) | |
Standard length (mm) | 36.9 | 29.7–36.1 | 26.6–30.0 |
Percent of standard length | |||
Body depth | 36.7 | 36.4–38.5 | 33.9–38.4 |
Caudal peduncle depth | 16.4 | 16.8–17.3 | 16.0–16.9 |
Pre-dorsal length | 43.1 | 42.0–47.2 | 61.1–61.8 |
Pre-pelvic length | 42.8 | 43.5–45.2 | 51.9–52.7 |
Length of dorsal-fin base | 45.9 | 43.4–46.2 | 24.1–25.9 |
Length of anal-fin base | 43.1 | 41.1–43.6 | 23.4–25.4 |
Caudal-fin length | 34.5 | 34.7–36.4 | 33.3–36.8 |
Pectoral-fin length | 25.5 | 26.9–28.8 | 22.7–26.9 |
Pelvic-fin length | 10.2 | 10.1–11.7 | 9.4–11.9 |
Head length | 27.6 | 27.3–29.8 | 29.0–31.6 |
Percent of head length | |||
Head depth | 115.6 | 108.6–121.9 | 100.1–104.5 |
Head width | 62.2 | 65.0–71.5 | 67.3–71.8 |
Snout length | 15.9 | 13.4–16.3 | 13.3–14.3 |
Lower jaw length | 20.5 | 18.8–21.2 | 15.7–16.8 |
Eye diameter | 30.5 | 27.9–33.8 | 30.5–31.6 |
Dorsal and anal fins relatively short, extremities rounded to slightly pointed in both sexes, without filamentous rays. Caudal fin subtruncate in males, rounded in females. Pectoral fin elliptical, posterior margin reaching between base of 6th and 9th anal-fin ray in males, reaching anus in females. Pelvic fin small, tip reaching between base of 3rd and 5th anal-fin rays in males, reaching base of 1st anal-fin ray in females; pelvic-fin bases medially united. Dorsal-fin origin at vertical between base of 1st and 2nd anal-fin rays in males, between base of 3rd and 5th anal-fin rays in females. Dorsal-fin rays 22–24 in males, 15–17 in females; anal-fin rays 21–22 in males, 17–19 in females; caudal-fin rays 23–24; pectoral-fin rays 12–; pelvic-fin rays 5–6. In males, minute papillate contact organs on inner surface three dorsal-most pectoral-fin rays. Second proximal radial of dorsal fin between neural spines of 7th and 8th vertebrae in males, between neural spines of 11th and 12th vertebrae in females; first proximal radial of anal fin between pleural ribs of 6th and 8th vertebrae in males, between pleural ribs of 8th and 9th vertebrae in females; total vertebrae 26–27.
Scales small, cycloid. Body and head entirely scaled, except anterior ventral surface of head. Body squamation extending over anterior 20% of caudal-fin base and gently extending on middle portion of anal-fin base; no scales on dorsal and pectoral-fin bases. Frontal squamation E-patterned; E-scales overlapping medially; no row of scales anterior to G-scale; supraorbital scales 1–2. Longitudinal series of scales 25–26; transverse series of scales 10; scale rows around caudal peduncle 12. One minute contact organ per scale of ventral portion of flank. Cephalic neuromasts: supraorbital 11–14; parietal 2; anterior rostral 1, posterior rostral 1; infraorbital 2 + 20–24; preorbital 3–4; otic 1–2, post-otic 2–3; supratemporal 1; median opercular 1, ventral opercular 2; pre-opercular 15–17, mandibular 10; lateral mandibular 4, paramandibular 1.
Males. Flank light blue on middle, light pink ventrally, and dark reddish orange dorsally and posteriorly; six to eight light red bars between humeral region and anterior part of caudal peduncle, more conspicuous anteriorly, three anterior-most red bars alternating with three dark greenish grey bars; minute vertically elongated metallic blue spots per scale, on whole flank. Dorsum pale reddish orange, venter white. Head light blue, margin of scales of dorso-posterior region reddish orange to golden. Iris yellow, with dark reddish brown bar through orbit centre. Unpaired fins dark red with bright blue marks, narrower than interspace, including six to nine transverse stripes and one basal row of dots on dorsal fin, stripes often interrupted and substituted by dots on posterior portion of sub-basal portion; dots and short vermiculate marks irregularly arranged on anterior portion of anal fin and transverse stripes on posterior portion; and seven or eight transverse rows of dots on caudal fin, coalesced to form bars on posterior half of fin; each unpaired fin with black line along distal margin. Paired fins red with black margin; minute light blue dots on pelvic fin. Females. Flank pale brownish grey, with faint vertically elongated grey spots and short bars along flank and one or two small black spots on flank centre at vertical between anus and anal-fin origin; anterior portion of flank pale golden. Dorsum pale brown, venter white. Head side pale blue with pale golden iridescence on opercle. Iris silver, with dark brownish grey bar through orbit centre. Fins hyaline.
Males with similar colour pattern as in life, but iridescence is lost and red marks substituted by grey or inconspicuous. Females with similar colour pattern as in life, but iridescence in head is lost.
Hypsolebias gardneri is known only from the type locality (14°17'39"S, 43°42'32"W, altitude about 500 m a.s.l.; Figure
The name gardneri in honour of Scottish naturalist George Gardner, who was in the Caatinga during his trip to Brazil between 1836 and 1841, making rich natural history collections. His reports on the region, and the numerous plant species and Cretaceous fossil fish collected by him represent important landmarks of our knowledge about Caatinga biodiversity.
UFRJ 6893, male, 26.9 mm SL; Brazil: Minas Gerais state: Janaúba municipality: temporary pool near road MG-401 at the town of Janaúba, floodplains of Gorutuba River, Verde Grande River drainage, São Francisco River basin, 15°48'06"S, 43°19'19"W, altitude about 530 m a.s.l.; W. J. E. M. Costa et al., 17 January 2017.
UFRJ 6895, 4 males, 17.4–26.1 mm SL, 1 female, 21.2 mm SL; UFRJ 6894, 3 males, 22.6 – 26.1 mm SL, 2 females, 15.9–21.0 mm SL (C&S); UFRJ 11473, 4 males, 15.5–17.9 mm SL (DNA); collected with holotype. – UFRJ 6892, 2 females, 21.0–23.7 mm SL; same locality and collectors, 21 April 2017.
Hypsolebias hamadryades is distinguished from all other species of the H. magnificus complex by the absence of dark greenish grey bars on the anterior portion of the flank in males (vs. presence) and presence of transverse blue stripes on the unpaired fins in males wider than interspace (vs. transverse series of dots or stripes narrower than interspace). It also differs from all other species of the complex by the following combination of character states relative to the male colour pattern: dorsal fin with transverse blue stripes and one basal row of blue dots (vs. rows of blue dots on the whole fin in H. picturatus); anal fin with transverse blue stripes on most portion of the fin (vs. dots and short vermiculate marks arranged on most part of the fin in H. gardneri, H. harmonicus and H. picturatus); and most portion of caudal fin with blue bars (vs. anterior half of caudal fin with transverse rows of blue dots, posterior half with transverse blue bars in H. gardneri and H. harmonicus, or dots on the entire fin in H. picturatus), and the presence of eight to ten light red bars between humeral region and the anterior part of the caudal peduncle (vs. six or seven in H. magnificus, H. harmonicus and H. gardneri). Hypsolebias hamadryades is further distinguished from H. gardneri and H. picturatus by having the dorsal-fin origin anterior to anal-fin origin in males (vs. just posterior anterior) and from H. harmonicus by having 23 or 24 caudal-fin rays (vs. 21 or 22).
Morphometric data appear in Table
Morphometric data of Hypsolebias hamadryades sp. n. Caudal fin of holotype damaged and regenerated, thus not measured.
Holotype | Paratypes | ||
---|---|---|---|
male | males (3) | females (3) | |
Standard length (mm) | 26.9 | 24.4–26.1 | 21.0–23.7 |
Percent of standard length | |||
Body depth | 36.0 | 33.9–35.0 | 33.9–34.6 |
Caudal peduncle depth | 15.3 | 14.2–14.8 | 12.9–14.9 |
Pre-dorsal length | 45.6 | 44.7–45.1 | 61.1–61.5 |
Pre-pelvic length | 44.3 | 42.6–44.4 | 52.8–53.6 |
Length of dorsal-fin base | 44.7 | 40.1–45.5 | 23.7–25.2 |
Length of anal-fin base | 41.1 | 36.7–41.7 | 22.6–23.9 |
Caudal-fin length | - | 33.0–33.9 | 32.7–34.9 |
Pectoral-fin length | 25.0 | 25.5–28.0 | 23.9–26.5 |
Pelvic-fin length | 9.6 | 8.2–10.6 | 8.5–11.9 |
Head length | 29.1 | 28.1–30.4 | 28.3–31.1 |
Percent of head length | |||
Head depth | 101.3 | 99.7–102.6 | 97.1–100.6 |
Head width | 63.6 | 59.8–61.5 | 66.5–70.5 |
Snout length | 14.2 | 13.7–15.8 | 11.9–13.9 |
Lower jaw length | 19.4 | 16.5–18.8 | 14.1–16.5 |
Eye diameter | 31.1 | 31.6–33.9 | 34.2–36.1 |
Dorsal and anal fins relatively short, extremities rounded to slightly pointed in both sexes, without filamentous rays. Caudal fin rounded. Pectoral fin elliptical, posterior margin reaching base of 7th anal-fin ray in males, reaching anus in females. Pelvic fin small, tip reaching between base of 2nd and 3rd anal-fin rays in males, reaching urogenital papilla in females; pelvic-fin bases medially united. Dorsal-fin origin anterior to anal-fin origin in males, anal-fin origin at vertical between base of 1st and 3rd dorsal-fin rays; dorsal-fin origin posterior to anal-fin origin in females, dorsal-fin origin at vertical between base of 1st and 3rd anal-fin rays in females. Dorsal-fin rays 22–26 in males, 15–17 in females; anal-fin rays 20–23 in males, 18–19 in females; caudal-fin rays 23–24; pectoral-fin rays 12–13; pelvic-fin rays 5–6. In males, minute papillate contact organs on inner surface of dorsal-most pectoral-fin ray. Second proximal radial of dorsal fin between neural spines of 5th and 7th vertebrae in males, between neural spines of 10th and 12th vertebrae in females; first proximal radial of anal fin between pleural ribs of 7th and 9th vertebrae in males, between pleural ribs of 8th and 10th vertebrae in females; total vertebrae 27–29.
Scales small, cycloid. Body and head entirely scaled, except anterior ventral surface of head. Body squamation extending over anterior 25% of caudal-fin base; no scales on dorsal, anal and pectoral-fin bases. Frontal squamation E-patterned; E-scales overlapping medially; no row of scales anterior to H-scale; one supraorbital scale. Longitudinal series of scales 26; transverse series of scales 11; scale rows around caudal peduncle 12. One minute contact organ per scale of anteroventral portion of flank. Cephalic neuromasts: supraorbital 14–16; parietal 2; anterior rostral 1, posterior rostral 1; infraorbital 2 + 18–20; preorbital 2; otic 2–3, post-otic 2; supratemporal 1; median opercular 1, ventral opercular 1; pre-opercular 12–15, mandibular 10; lateral mandibular 5, paramandibular 1.
Males. Flank light blue on middle, light pink ventrally, and pale reddish orange dorsally and posteriorly; eight to ten light red bars between humeral region and anterior part of caudal peduncle, more conspicuous anteriorly; minute vertically elongated metallic blue spots per scale, on whole flank. Dorsum pale reddish orange, venter white. Head light blue, margin of scales of dorso-posterior region reddish orange. Iris yellow, with dark reddish brown bar through orbit centre. Unpaired fins red with bright blue transverse stripes, sometimes interrupted, including four or five on dorsal and anal fins, and six or seven on caudal fin; stripes broader than interspace; each unpaired fin with one row of small bright blue spots along basal portion and black line along distal margin. Paired fins red with black margin; faint blue dots on pelvic fin. Females. Flank light grey, with faint vertically elongated grey spots and one or two small black spots on flank centre, at vertical between pelvic-fin base and urogenital papilla; scale border pale yellow on dorsal portion of flank and head. Dorsum light grey, venter white. Head side pale grey with pale golden iridescence on opercle. Iris silver, with dark grey bar through orbit centre. Fins hyaline.
Males with similar colour pattern as in life, but iridescence is lost and red marks substituted by grey or inconspicuous. Females with similar colour pattern as in life, but iridescence in head is lost.
Hypsolebias hamadryades is only known from a pool in the floodplains of the Gorutuba River, within the town of Janaúba, Minas Gerais, Brazil (15°48'06"S, 43°19'19"W, altitude about 530 m a.s.l.; Figure
The name hamadryades is an allusion to the occurrence of the new species in the forested part of a Caatinga temporary pool. This name was used by the Bavarian naturalist Karl Friedrich Philipp von Martius for the Caatinga in his classification of vegetation formations of Brazil, in which he used names of Greek mythological beings to name each Brazilian phytogeographical province. The name is opportune by referring to hamadryades, a particular kind of Greek nymph entity that is believed to be associated to trees, vanishing when trees die. Similarly, field studies have shown that populations of species of the H. magnificus group became extinct after marginal deforestation (see discussion below).
The two new species here described, H. gardneri and H. hamadryades, are respectively most similar in colour pattern to H. harmonicus and H. magnificus, what is mostly evident in the male caudal fin (Figure
Caudal fin of live males of the Hypsolebias magnificus species complex. A H. harmonicus, holotype, UFRJ 6696, 29.4 mm SLB H. gardneri sp. n., paratype, UFRJ 6797, 34.4 mm SLC H. hamadryades Costa sp. n., paratype, UFRJ 6895, 24.8 mm SLD H. magnificus, specimen from Gado Bravo, UFRJ 4959, 31.2 mm SLE H. magnificus, topotype not preserved, about 25 mm SLF H. picturatus. Paratype, UFRJ 5053, 38.6 mm SL. Photographs by WJEM Costa.
Little is presently known about the maximum length that seasonal killifishes endemic to the Caatinga may reach. According to field data, species of the genus Cynolebias Steindachner, 1876 may reach about 135 mm SL (
Although our phylogeny was based in a short fragment of a single mitochondrial gene and relatively low number of individuals, the concordance between molecularly delimited (i.e., exclusive lineages supported by high Bayesian posterior probabilities) and morphologically diagnosable (i.e., exhibiting unique combination of morphological character states) highly supports recognition of five distinct species. In addition, the naturally fragmented distribution pattern of recognised species due to their ecologically specialised nature in uniquely inhabiting pools under dense concentration of shrubs and trees, which is not a common habitat in the Caatinga, also reinforces hypotheses of genetic isolation among these species.
Continuous field studies in the Caatinga have revealed a high diversity of seasonal killifish species, but they have also reported rapid environmental decline caused by deforestation, new roads and draining projects for agricultural proposals, extirpating natural habitats many killifish populations (
We are grateful to Anaïs Barbosa, Claudia Bove, Bruno Costa, and Axel Katz for help on collecting trips. The manuscript benefited from suggestions and comments provided by Devin Bloom, Michael Ghedotti, and Felipe Ottoni. This study was supported by CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico, Ministério de Ciência e Tecnologia, grant number 301990/2007-7 and 307349/2015-2 to WJEMC) and FAPERJ (Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro, grant number 103.189/2011 and E-26/202.954/2017 to WJEMC).