Short Communication
Short Communication
Occurrence and the ecological implication of a tropical anguillid eel Anguilla marmorata from peninsular Malaysia
expand article infoSiti Raudah Abdul Kadir, Mohamad Hafiz Farhan Abdul Rasid, Kok Onn Kwong§, Li Lian Wong|, Takaomi Arai
‡ Universiti Malaysia Terengganu, Kuala Terengganu, Malaysia
§ Universiti Sains Malaysia, Minden, Malaysia
| University Malaysia Terengganu, Kuala Terengganu, Malaysia
¶ University Brunei, Jalan Tungku Link, Brunei
Open Access


Recent studies suggested that accurate species identification in the tropical anguillid eels based on morphological examination requires confirmation by molecular genetic analysis. Previous studies found that two tropical anguillid eels, Anguilla bicolor bicolor and A. bengalensis bengalensis, were found in peninsular Malaysia (West Malaysia) based on morphological and molecular genetic analyses. This study is the first record of A. marmorata in peninsular Malaysia confirmed by both morphological and molecular genetic analyses. The present study also suggests that accurate tropical eel species identification is difficult by morphological identification alone; therefore, molecular genetic analysis is needed for precise species confirmation.


Anguillid eel, giant mottled eel, molecular, species identification, tropical fish


The anguillid eels of the genus Anguilla Schrank are widely distributed throughout the world. These eels have a catadromous life history, migrating between inland or coastal growth habitats and offshore spawning locations. Nineteen species or subspecies of Anguilla have been reported worldwide, thirteen of which occur in tropical regions. Of the thirteen species/subspecies found in tropical areas, seven species/subspecies inhabit western Pacific around Indonesia and Malaysia: A. celebesensis Kaup, A. interioris Whitely, A. bengalensis bengalensis Gray, A. marmorata Quoy & Gaimard, A. borneensis Popta, A. bicolor bicolor McClelland and A. bicolor pacifica Schmidt (Ege 1939, Castle and Williamson 1974, Arai et al. 1999).

Molecular phylogenetic research on freshwater eels have revealed that tropical eels are the most basal species originating in the Indonesian and Malaysian regions and that freshwater eels radiated from the tropics to colonize temperate regions (Minegishi et al. 2005). Recently, freshwater eel biology such as species composition, distribution, and life history has gradually accumulated in tropical eel species in Malaysian waters (e.g., Arai et al. 2012, 2015, 2017a, b, Arai and Chino 2013, Arai 2014, Abdul Kadir et al. 2015, Arai and Wong 2016, Wong et al. 2017). Identification of eels at the species level using morphological examination only is difficult because of similarities and overlapping of morphological characters, particularly in tropical anguillids (Arai et al. 2015, Arai and Wong 2016). Currently, two anguillid eels, Anguilla bengalensis bengalensis and A. bicolor bicolor, have been confirmed to occur in peninsular Malaysia (Arai et al. 2015, Arai and Wong 2016).

In the present study, two anguillid specimens were collected and examined from the Pondok Upeh River, Penang Island. As Arai et al. (2015) and Arai and Wong (2016) suggested that tropical eel species identification could be accurately validated by molecular genetic analysis after morphological observation, the specimens were subjected to identification using both morphological and mitochondrial cytochrome oxidase subunit I (COI) 16S ribosomal RNA (16S rRNA) sequence analyses. This paper describes the first confirmed record of a tropical anguillid eel, Anguilla marmorata, from peninsular Malaysia.

Materials and methods

Eel samples and morphological analysis

Two anguillid specimens were collected by hook and line by local people in the Pondok Upeh River in Penang Island of peninsular Malaysia on 2 April 2015 (Fig. 1).

External measurements follow Ege (1939) and Watanabe et al. (2004), and the data are shown in Table 1. The fin difference index (FDI), which is the distance between the verticals from the origin of the dorsal fin (Z) to the anus (ano-dorsal length) relative to the total length (LT) (Ege 1939) was calculated as follows: FDI = 100 ZLT-1. The number of teeth in the mid part of the maxillary band is abbreviated as NMM.

Figure 1. 

Sampling site in the Pondok Upeh River in Penang Island of peninsular Malaysia.

Table 1.

Morphometric characteristics of Anguilla marmorata and A. bengalensis bengalensis as revealed by molecular genetic analyses.

Specimen number SP26 TB316
Species by molecular genetic A. marmorata A. bengalensis bengalensis
Species by morphology A. celebesensis A. marmorata
Measurements (mm)
Total length (Lt) 904 889
Standard length (SL) 886 975
Body weight (g) 2335 1579
Head length (HL) 136 127
Predorsal length (PD) 303 259
Preanal length (PA) 403 395
Length of intermaxillary-vomerine band (LV) 28.7 24.9
Length of left maxillary band (LM) 30.9 32.1
Number of teeth of mid part of maxillary band (NMM) 5 1
Width of mid part of maxillary band (WMM) 4.4 1.1
FDI (%) 11 15

Molecular genetic analysis

Two mitochondrial genes, cytochrome oxidase c subunit 1 (COI) and 16S ribosomal RNA (16S rRNA), were used. DNA was extracted from a dorsal fin clip of each specimen using Gentra Puregene Tissue Kit (QIAGEN, USA), according to the manufacturer’s instructions. Total DNA concentration and quality was quantified using BioPhotometer Plus spectrophotometer (Eppendorf, Germany). Both mitochondrial cytochrome COI and 16S rRNA genes were amplified using primer pairs (Table 2) to validate the species identity of each specimen. PCR reaction and condition for COI gene was performed according to Abdul Kadir et al. (2015), whereas PCR amplification for 16S rRNA gene was conducted according to Arai and Wong (2016). PCR amplicons were purified using QIAquick® PCR Purification Kit (QIAGEN, USA), labeled with BigDye Terminator v.3.1 Cycle Sequencing Kit (Applied Biosystems Inc., USA), and sequenced bi-directionally on an ABI PRISM 3730xl Genetic Analyzer. Generated sequence trace files were manually edited and assembled using SeqMan Pro application in DNASTAR version 6.0 (DNASTAR Inc., USA). The contig sequences were compared for percentage similarity with the reference sequences in the GenBank using BLAST search. The sequences for both specimens were deposited to GenBank with accession numbers as listed in Table 3.

Table 2.

Primers used in this study.

Gene Primer Sequences Sources
Cytochrome oxidase subunit I (COI) FF2d: 5’TTCTCCACCAACCACAARGAYATYGG3’
Ivanova et al. (2007)
Palumbi et al. (1991)


The two specimens examined in this study had variegated markings on the body (Fig. 2a, b). However, one (SP26) had wide maxillary bands of teeth with a small number of NMM teeth (Fig. 2c) and 11 of FDI while the second specimen (TB316) had narrow maxillary bands of teeth with a higher NMM (Fig. 2d) and 15 of FDI.

Figure 2. 

Anguilla marmorata and A. bengalensis bengalensis collected in the Pondok Upeh River in Penang Island of Peninsular Malaysia. A Anguilla marmorata (904 mm in TL) B Anguilla bengalensis bengalensis (889 mm in TL) C Wide maxillary bands of teeth of A. marmorata D Narrow maxillary bands of teeth of A. bengalensis bengalensis. DNA was extracted from dorsal fin clip of each specimen, and hence the posterior dorsal fin of each specimen is lacking.

SP26 was assigned into the first species group of the genus Anguilla (A. celebesensis, A. interioris, A. megastoma Kaup, A. luzonensis Watanabe, Aoyama and Tsukamoto) based on the variegated skin and wide maxillary bands of teeth (Ege 1939, Watanabe et al. 2004, Arai and Wong 2016). TB316 was assigned to the second group (A. bengalensis bengalensis, A. bengalensis labiata Peters, A. marmorata, A. reinhardtii Steindachner) based on variegated skin and narrow maxillary bands of teeth (Ege 1939, Watanabe et al. 2004, Arai and Wong 2016).

The geographical distribution of anguillids is used in combination with key morphological characteristics to determine the classification of each species into four groups. Within the first group, A. interioris, A. megastoma, A. luzonensis exist in New Guinea, Solomon Islands, New Caledonia, Fiji Islands, Cook Islands, and northern Philippines (Ege 1939). Therefore, SP26 was considered to be A. celebesensis with a range of FDI from 6 to 12 and of NMM from 4 to 9 (Ege 1939, Watanabe et al. 2004).

Within the second group, A. bengalensis labiata and A. reinhardtii exist in the mid-southeastern region of Africa and eastern Australia and Tasmania, respectively (Ege 1939). Therefore, both species were not considered when identifying the samples in the present study. The FDI of the other two species, A. bengalensis bengalensis and A. marmorata, was studied further. According to the key morphological characteristics used for their identification (Ege 1939, Watanabe et al. 2004), the FDI of A. marmorata is in the range of 12 to 20, higher than that of A. bengalensis bengalensis, which ranges from 8 to 14 (Ege 1939, Watanabe et al. 2004). Based on the FDI of TB316, which equals 15, this specimen was identified as A. marmorata.

A total contrast was found in the species identification outcomes in the molecular genetic analysis when compared to the morphological observation. As shown in Table 3, molecular identification based on two genes confirms that SP26, which was morphologically identified as A. celebesensis, was in fact A. marmorata. On the other hand, specimen TB316 identified as A. marmorata was actually confirmed as A. bengalensis bengalensis based on the genetic results.

Table 3.

Validation of species identity of collected specimens based on mitochondrial cytochrome oxidase subunit I (COI) and 16S ribosomal RNA (16S rRNA) genes using BLAST search in GenBank.

Morphological identification Genetic identification % Max identity (BLASTn) GenBank
Accession Number
A. celebesensis
Anguilla marmorata 94 99 KT728354 KT728352
A. marmorata
Anguilla bengalensis bengalensis 99 99 KT728353 KT728351


The findings from this and previous studies (Arai et al. 2015, Arai and Wong 2016) have suggested that tropical eel species identification could be accurately validated by molecular genetic analysis after morphological observation. Misidentification using morphology has been reported for A. borneensis and A. bicolor bicolor (Arai and Wong 2016). Likewise, same mismatches between morphological identification and genetic identification were also found in TB316. Although TB316 was identified as A. marmorata by morphological key characters, it was identified as A. bengalensis bengalensis by molecular genetic analyses. The inconclusive morphological identification of these specimens is not merely a technical error, but, rather, is due to the inadequacy of the description of the key of morphological characteristics. Further, the species identity of both specimens from this study have been validated by a concrete molecular data of previous studies, in which putative voucher specimens of A. bengalensis bengalensis (Arai and Wong 2016) and A. marmorata (Wong et al. 2017) were morphologically examined for species confirmation. This verification process is necessary to ensure that our molecular data is solely based on correctly identified species, instead of referring to sequences in GenBank which may likely derived from misidentified specimens.

In previous studies, Anguilla marmorata was reported to exist in Langkawi Island, peninsular Malaysia (Ahmad and Lim 2006, Azmir and Samat 2010). However, after a thorough morphological re-examination by Ahmad and Lim (2006) of one sample of A. marmorata preserved in formalin, Arai (2014) discovered that the true identify of that particular sample was A. bengalensis bengalensis. In fact, the difficulty in distinguishing between A. marmorata and A. bengalensis bengalensis is augmented by their overlapping morphological characteristics. Furthermore, recent molecular studies also found that all eels that possess skin with variegated markings were identified as A. bengalensis bengalensis (Arai et al. 2015, Arai and Wong 2016); however, this is the first description of the occurrence of A. marmorata in peninsular Malaysia identified by molecular genetic analyses. The present and previous studies all lead to the conclusion that currently three eels, i.e., A. bengalensis bengalensis, A. marmorata, and A. bicolor bicolor, occur in peninsular Malaysia.

According to Jespersen (1942), the anguillid eels distributed in Java and Sumatra may have their spawning areas situated off the south-western coast of Sumatra. Anguilla marmorata in Malaysia might originate from spawning areas off Sumatra. However, the distance between the spawning area and recruitment area in peninsular Malaysia is considerably larger than the distance between the islands of Java and Sumatra; therefore, the abundance of specimens that survive to reach peninsular Malaysia might be quite low. This would make A. marmorata difficult to identify in the area. Further field sampling should be undertaken, along with accurate species identification, in order to better understand the details of species composition and distribution of the tropical anguillid eels.


This study was financially supported by the Ministry of Higher Education Malaysia under the Fundamental Research Grant Scheme (Vot Nos. 59281 and 59406) and Universiti Brunei Darussalam under the Competitive Research Grant Scheme (Vot No. UBD/OVACRI/CRGWG(003)/161101).


  • Abdul Kadir SR, Abdul Rasid MHF, Wong LL, Kwong KO, Arai T (2015) First record of albinism in a tropical anguillid eel Anguilla bengalensis bengalensis from Malaysia. Marine Biodiversity Records 8: e114.
  • Ahmad A, Lim KKP (2006) Inland fishes recorded from the Langkawi Islands, Peninsular Malaysia. Malaysian Nature Journal 59: 103–120.
  • Arai T, Aoyama J, Limbong D, Tsukamoto K (1999) Species composition and inshore migration of the tropical eels Anguilla spp. recruiting to the estuary of the Poigar River, Sulawesi Island. Marine Ecology Progress Series 188: 299–303.
  • Arai T, Chino N (2013) Timing of maturation of a tropical eel, Anguilla bicolor bicolor in Malaysia. Journal of Applied Ichthyology 29: 271–273.
  • Arai T (2014) First record of a tropical mottled eel, Anguilla bengalensis bengalensis (Actinopterygii: Anguillidae) from the Langkawi Islands, Peninsular Malaysia, Malaysia. Marine Biodiversity Records 7: e38.
  • Arai T, Chin TC, Kwong KO, Siti Azizah MN (2015) Occurrence of the tropical eels, Anguilla bengalensis bengalensis and A. bicolor bicolor in Peninsular Malaysia, Malaysia and implications for the eel taxonomy. Marine Biodiversity Records 8: e28.
  • Arai T, Wong LL (2016) Validation of the occurrence of the tropical eels, Anguilla bengalensis bengalensis and A. bicolor bicolor at Langkawi Island in Peninsular Malaysia, Malaysia. Tropical Ecology 57: 23–31.
  • Arai T, Abdul Kadir SR (2017a) Opportunistic spawning of tropical anguillid eels Anguilla bicolor bicolor and A. bengalensis bengalensis. Scientific Reports 7: 41649.
  • Azmir IA, Samat A (2010) Diversity and distribution of stream fishes of Pulau Langkawi, Malaysia. Sains Malaysiana 39: 869–875.
  • Castle PHJ, Williamson GR (1974) On the validity of the freshwater eel species Anguilla ancestralis Ege, from Celebes. Copeia 1974: 569–570.
  • Ege V (1939) A revision of the Genus Anguilla Shaw. Dana Report 16: 8–256.
  • Jespersen P (1942) Indo-Pacific leptocephali of the Genus Anguilla. Dana Report 22: 1–128.
  • Minegishi Y, Aoyama J, Inoue JG, Miya M, Nishida M, Tsukamoto K (2005) Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences. Molecular Phylogeny and Evolution 34: 134–146.
  • Palumbi S, Martin A, Romano S, McMillan W, Stice L, Grabowski G (1991) The Simple Fool’s Guide to PCR, Version 2. Honolulu: Department of Zoology and Kewalo Marine Laboratory.
  • Watanabe S, Aoyama J, Tsukamoto K (2004) Reexaminationof Ege’s (1939) use of taxonomic characters of the genus Anguilla. Bulletin of Marine Science 74: 337–351.
  • Wong LL, Abdul Kadir SR, Abdullah RAA, Lasuin CA, Kwong KO, Arai T (2017) Evidence supporting the occurrence and the ecological implication of giant mottled eel, Anguilla marmorata (Actinopterygii: Anguilliformes: Anguillidae), from Sabah, Borneo Island. Acta Ichthyologica et Piscatoria 47: 73–79.
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