Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol

Jeremy Miller; Kevin Beentjes; Peter van Helsdingen; Steven IJland

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The Hemiptera (Insecta) of Canada: Constructing a Reference Library of DNA Barcodes. PLOS ONE 10: e0125635.

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Ulvi Kerem Günay, Batuhan Yaman Yakın, Atakan Pipilos, Emre Keskin, C. Varol Tok (2024)
Can DNA Barcode Study be Done from a Museum Specimen Fixed in a Formaldehyde Solution? A Case of Emys orbicularis (Linnaeus, 1758). Çanakkale Onsekiz Mart University Journal of Marine Sciences and Fisheries 7: 18.

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Jonas J. Astrin, Hubert Höfer, Jörg Spelda, Joachim Holstein, Steffen Bayer, Lars Hendrich, Bernhard A. Huber, Karl-Hinrich Kielhorn, Hans-Joachim Krammer, Martin Lemke, Juan Carlos Monje, Jérôme Morinière, Björn Rulik, Malte Petersen, Hannah Janssen, Christoph Muster, Matja Kuntner (2016)
Towards a DNA Barcode Reference Database for Spiders and Harvestmen of Germany. PLOS ONE 11: e0162624.

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Joseph J. Bowden, Berni van der Meer, Eric R. D. Moise, Rob C. Johns, Martin Williams (2023)
Not just for the birds: Spiders as natural enemies of spruce budworm (Choristoneura fumiferana, Clem.). Journal of Applied Entomology 147: 176.

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Susan R. Kennedy, Stefan Prost, Isaac Overcast, Andrew J. Rominger, Rosemary G. Gillespie, Henrik Krehenwinkel (2020)
High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances and interactions in spider communities. Development Genes and Evolution 230: 185.

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F. Andres Rivera-Quiroz, Jeremy Abraham Miller (2021)
Old Brains in Alcohol: The Usability of Legacy Collection Material to Study the Spider Neuroarchitecture. Diversity 13: 601.

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Grant R. Brown, Claire Dagen, Ben Reilly O’Donnell, Jeff A. Graves (2020)
A rapid protocol for generating arthropod DNA barcodes suitable for use with undergraduate students. Journal of Biological Education 54: 521.

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Shoko Nakamura, Shigeaki Tamura, Hisatomo Taki, Etsuko Shoda‐Kagaya (2020)
Propylene glycol: a promising preservative for insects, comparable to ethanol, from trapping to DNA analysis. Entomologia Experimentalis et Applicata 168: 158.

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Hannah M. Wood, Vanessa L. González, Michael Lloyd, Jonathan Coddington, Nikolaj Scharff (2018)
Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea). Molecular Phylogenetics and Evolution 127: 907.

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Gergin A. Blagoev, Jeremy R. deWaard, Sujeevan Ratnasingham, Stephanie L. deWaard, Liuqiong Lu, James Robertson, Angela C. Telfer, Paul D. N. Hebert (2016)
Untangling taxonomy: a DNA barcode reference library for Canadian spiders. Molecular Ecology Resources 16: 325.

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Grant R. Brown (2019)
First DNA barcode for the enigmatic Leiobunum sp. A (Opiliones). Arachnology 18: 94.

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Yao Xu, Sufang Zhang, Hongbin Wang, Mei Wang, Guohong Li (2019)
Mitochondrial Gene Sequence (COI) Reveals the Genetic Structure and Demographic History of Lymantria dispar (Lepidoptera: Erebidae: Lymantriinae) in and around China. Insects 10: 146.

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Darko Cotoras, Gemma Murray, Joshua Kapp, Rosemary Gillespie, Charles Griswold, W. Simison, Richard Green, Beth Shapiro (2017)
Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui. Genes 8: 403.

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Bonnie B. Blaimer, Michael W. Lloyd, Wilson X. Guillory, Seán G. Brady, Patrick O'Grady (2016)
Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens. PLOS ONE 11: e0161531.

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Yao Xu, XueYu Ren, HongBin Wang, Mei Wang, GuoHong Li (2020)
Evaluation of DNA Degradation and Establishment of a Degradation Analysis Model for Lepidoptera Specimens. BioTechniques 68: 138.

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Silvia Andrade Justi, John Soghigian, David B. Pecor, Laura Caicedo-Quiroga, Wiriya Rutvisuttinunt, Tao Li, Lori Stevens, Patricia L. Dorn, Brian Wiegmann, Yvonne-Marie Linton, Pedro L. Oliveira (2021)
From e-voucher to genomic data: Preserving archive specimens as demonstrated with medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae). PLOS ONE 16: e0247068.

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Jonathan David Baza-Moreno, Leticia Vega-Alvarado, Guillermo Ibarra-Núñez, Karina Guillén-Navarro, Luz Verónica García-Fajardo, Verónica Jiménez-Jacinto, Elia Diego-García (2023)
Transcriptome analysis of the spider Phonotimpus pennimani reveals novel toxin transcripts. Journal of Venomous Animals and Toxins including Tropical Diseases 29: .

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Andrew Edward Z. Short, Torsten Dikow, Corrie S. Moreau (2018)
Entomological Collections in the Age of Big Data. Annual Review of Entomology 63: 513.

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Christoph Mayer, Lars Dietz, Elsa Call, Sandra Kukowka, Sebastian Martin, Marianne Espeland (2021)
Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens. Systematic Entomology 46: 649.

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Eleanor Green, Camilla Speller (2017)
Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles. Genes 8: 180.

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Tricia C. Goulding, Norine W. Yeung, Kenneth A. Hayes (2021)
Historical DNA from Museum Shell Collections: Evaluating the Suitability of Dried Micromollusks for Molecular Systematics. American Malacological Bulletin 38: .

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Zheng Liang Wang, Xiao Qing Yang, Tian Zhao Wang, Xiaoping Yu (2018)
Assessing the effectiveness of mitochondrial COI and 16S rRNA genes for DNA barcoding of farmland spiders in China. Mitochondrial DNA Part A 29: 695.

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Henrik Krehenwinkel, Stano Pekar, Matjaž Kuntner (2015)
An Analysis of Factors Affecting Genotyping Success from Museum Specimens Reveals an Increase of Genetic and Morphological Variation during a Historical Range Expansion of a European Spider. PLOS ONE 10: e0136337.

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Grant R. Brown, Iain M. Matthews (2016)
A review of extensive variation in the design of pitfall traps and a proposal for a standard pitfall trap design for monitoring ground‐active arthropod biodiversity. Ecology and Evolution 6: 3953.

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Shahan Derkarabetian, Ligia R. Benavides, Gonzalo Giribet (2019)
Sequence capture phylogenomics of historical ethanol‐preserved museum specimens: Unlocking the rest of the vault. Molecular Ecology Resources 19: 1531.

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Mingxin Liu, Laurence J. Clarke, Susan C. Baker, Gregory J. Jordan, Christopher P. Burridge (2020)
A practical guide to DNA metabarcoding for entomological ecologists. Ecological Entomology 45: 373.

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Stuart J. Longhorn, Chris A. Hamilton (2020)
New World Tarantulas. Chapter 2: 25.

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