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Research Article
Hidden diversity of rock geckos within the Cnemaspis siamensis species group (Gekkonidae, Squamata): genetic and morphological data from southern Thailand reveal two new insular species and verify the phylogenetic affinities of C. chanardi and C. kamolnorranathi
expand article infoNatee Ampai, Attapol Rujirawan§, Siriporn Yodthong|, Korkhwan Termprayoon§, Bryan L. Stuart, Perry L. Wood Jr#, Anchalee Aowphol§
‡ Srinakharinwirot University, Bangkok, Thailand
§ Kasetsart University, Bangkok, Thailand
| Thaksin University, Phattalung, Thailand
¶ Section of Research & Collections, North Carolina Museum of Natural Sciences, Raleigh, United States of America
# University of Michigan, Ann Arbor, United States of America
Open Access

Abstract

Two new insular rock geckos in the genus Cnemaspis are described from Ko Samui in Surat Thani Province and Ko Similan in Phang-nga Province, southern Thailand, based on a combination of morphological and mitochondrial NADH dehydrogenase subunit 2 (ND2) data. Both new species represent divergent lineages within the Cnemaspis siamensis species group. Cnemaspis samui sp. nov. is distinguished from other species in the group by having eight or nine supralabial and infralabial scales; 5–8 pore-bearing precloacal scales in males, pores rounded; 25–27 paravertebral tubercles, arranged randomly; 22–25 subdigital lamellae under 4th toe; enlarged median subcaudal scale row present; gular region, abdomen, limbs and subcaudal region yellowish only in males, and uncorrected pairwise divergences of 8.86–26.83% from all other species in the C. siamensis species group. Cnemaspis similan sp. nov. is distinguished from other species in the group by having eight or nine supralabial and seven or eight infralabial scales; one pore-bearing precloacal scale in males, pore rounded; 24 or 25 paravertebral tubercles, arranged randomly; 23 or 24 subdigital lamellae under 4th toe; no enlarged median subcaudal scale row; pale yellow reticulum on head, neck, flanks, belly and limbs in male only, and uncorrected pairwise divergences of 9.34–27.11% from all other species in the C. siamensis species group. Cnemaspis samui sp. nov. is found along granitic rocky stream outcrops of Hin Lad Waterfall, Ko Samui, Gulf of Thailand, while Cnemaspis similan sp. nov. occurs in granitic rocky outcrops near Ao Nguang Chang Bay, Ko Similan, Andaman Sea. The phylogenetic analyses confirmed that C. chanardi and C. kamolnorranathi are also nested within the C. siamensis species group, as previously hypothesized from morphology and color pattern characters.

Keywords

Cnemaspis, integrative taxonomy, Island, phylogeny, Thailand

Introduction

The rock gecko genus Cnemaspis Strauch, 1887 is one of the most diverse reptile genera, with 192 recognized species known to date (Uetz et al. 2022). The genus has a geographically widespread distribution, ranging from South Asia to Southeast Asia, and is composed of two separate clades based on multi-locus phylogenetic analyses (Gamble et al. 2012, 2015; Pyron et al. 2013; Karunarathna et al. 2019; Malonza and Bauer 2022). The 64 currently described Southeast Asian species of Cnemaspis represent a monophyletic group, include many species with specializations for various rocky habitats (Grismer et al. 2010, 2014; Nguyen et al. 2020), and are distributed in Myanmar, Thailand, Laos, Cambodia, Vietnam, Malaysia and Indonesia (Bauer and Das 1998; Das 2005; Grismer and Ngo 2007; Grismer et al. 2010, 2014, 2020; Kurita et al. 2017; Riyanto et al. 2017; Wood et al. 2017; Ampai et al. 2019, 2020; Lee et al. 2019; Nashriq et al. 2022). In Thailand, 19 named species of Southeast Asian Cnemaspis (Grismer et al. 2010, 2014, 2020; Wood et al. 2017; Ampai et al. 2019, 2020; Uetz et al. 2022) occur throughout much of the country’s mainland and adjacent offshore islands (Grismer et al. 2014, 2020; Wood et al. 2017; Ampai et al. 2019, 2020; Lee et al. 2019).

Historically, the taxonomy and systematics of Thai Cnemaspis depended solely on data from morphology and color pattern characteristics (e.g., Smith 1925; Taylor 1963; Bauer and Das 1998; Grismer et al. 2010). During the past decade, integrative taxonomic approaches that included morphological characteristics, ecological data, and molecular genetics (e.g., Grismer et al. 2014, 2020; Wood et al. 2017; Ampai et al. 2019, 2020; Lee et al. 2019) have been used to address and resolve previous taxonomic issues (Wood et al. 2017). Thai Cnemaspis species are assigned to four species groups based on morphological character state differences and genetics (Grismer et al. 2014; Ampai et al. 2019, 2020), these being the affinis group, the chanthaburiensis group, the kumpoli group, and the siamensis group. Of these, the siamensis group shows the highest species richness with 12 recognized species in Thailand, including C. adangrawi Ampai et al. 2019, C. chanardi Grismer et al. 2010, C. huaseesom Grismer et al. 2010, C. kamolnorranathi Grismer et al. 2010, C. lineatubercularis Ampai et al. 2020, C. omari Grismer et al. 2014, C. phangngaensis Wood et al. 2017; C. punctatonuchalis Grismer et al. 2010, C. selenolagus Grismer et al. 2020, C. siamensis (Smith, 1925), C. thachanaensis Wood et al. 2017, and C. vandeventeri Grismer et al. 2010. Only one member of the siamensis group, C. roticanai Grismer & Chan, 2010, occurs outside of Thailand, where it occurs on Langkawi Island, Malaysia. Within the siamensis group, C. chanardi and C. kamolnorranathi remain the least known species, in part due to a lack of genetic data from their type localities.

We conducted field surveys for Cnemaspis during 2015–2020 at five localities in southern Thailand. Morphological and mitochondrial DNA data analyses revealed that the Cnemaspis samples from Ko (= island) Samui in the Gulf of Thailand and Ko Similan in the Andaman Sea differed from all known congeners of Thai Cnemaspis. In addition, we obtained samples from the type localities of C. chanardi and C. kamolnorranathi. Herein, the two distinct insular populations of Cnemaspis are described as new species and genetic data are used to verify the phylogenetic placements of C. chanardi and C. kamolnorranathi within the C. siamensis group.

Materials and methods

Taxon sampling and specimen collection

Fieldwork was conducted at five different localities in southern Thailand including (1) Pathio District, Chumphon Province in June 2017, (2) Kanchanadit District, Surat Thani Province in January 2019, (3) Nayong District, Trang Province in May 2016, December 2017, and July 2019, (4) Ko Samui, Surat Thani Province in September 2015, July 2018, and August 2020, and (5) Ko Similan, Mu Ko Similan National Park, Phang-nga Province in March 2018. Sampling was conducted by using visual encounter surveys both during the day (1000–1800 h) and at night (1900–2200 h). Ecological data (air temperature and relative humidity) were collected using a Kestrel 4000 Weather Meter. Habitat preferences (e.g., microhabitat, substrate type and habitat use) were also recorded. Geographical coordinates and elevation were taken using a Garmin GPSMAP 64s. At each locality, specimens were photographed and euthanized by cardiac injection of tricaine methane sulfonate (MS-222) solution (Simmons 2015). Liver samples were removed from euthanized specimens for molecular analysis, preserved in 95% ethanol, and stored at -20 °C. Voucher specimens were then fixed in 10% formalin and later transferred to 70% ethanol for long-term storage. Specimens and tissue samples were deposited in the herpetological collection at the Zoological Museum of Kasetsart University, Bangkok, Thailand (ZMKU) . All specimens of the C. siamensis group, including the type specimens of C. adangrawi, C. chanardi, C. huaseesom, C. lineatubercularis, C. niyomwanae, C. punctatonuchalis, and C. vandeventeri, were examined as comparative material (Appendix I) in the holdings of ZMKU and the Thailand Natural History Museum, Pathum Thani, Thailand (THNHM). Additional data were obtained from the original species descriptions of Thai Cnemaspis (Smith, 1925; Grismer et al. 2010, 2014, 2020; Wood et al. 2017; Ampai et al. 2019, 2020).

Molecular genetic study and phylogenetic analyses

Genomic DNA from 21 individuals of Cnemaspis (C. adangrawi, N = 2; C. chanardi, N = 4; C. kamolnorranathi, N = 5; C. siamensis, N = 2; Ko Samui samples, N = 4; and Ko Similan samples, N = 4) was extracted from liver tissue (Table 1) using the Qiagen DNAeasyTM Blood & Tissue Kit (Valencia, CA, USA). A fragment of mitochondrial (mt) DNA encoding the NADH dehydrogenase subunit 2 (ND2) gene and parts of its flanking tRNAs Trp, Ala, Asn and Cys was amplified by polymerase chain reaction (PCR) with an initial denaturation (95 °C, 2 min) followed by 33 cycles of denaturation (95 °C, 35s), annealing (52 °C, 35s), and extension (72 °C, 35s) and the light strand primer MetF1(L4437b; 5’-AAGCAGTTGGGCCCATACC-3’; Macey et al. 1997) and heavy strand primer CO1R1 (H5934; 5’-AGRGTGCCAATGTCTTTGTGRTT-3’; Macey et al. 1997). PCR products were purified by the NucleoSpin Gel and PCR Clean-up Kit (Machery-Nagel Inc.) and sequenced using the amplifying primers on an ABI 3730XL automatic sequencer (Sango Biotech Inc, Shanghai, China). The generated DNA sequences were edited and aligned using Geneious R11 (Biomatters, Ltd, Auckland, New Zealand). The newly generated sequences were deposited in GenBank under accession numbers ON843665ON843685 (Table 1).

Table 1.

Voucher information, including locality, collection numbers, GenBank accession numbers and reference for the specimens used in the phylogenetic analyses. Voucher abbreviations are as follows: Monte L. Bean Life Science Museum at Brigham Young University (BYU), California Academy of Sciences (CAS), the Field Museum of Natural History, Chicago, Illinois, USA (FMNH), La Sierra University Herpetological Collection (LSUHC), the Thailand Natural History Museum, Pathum Thani, Thailand (THNHM), Universiti Sains Malaysia Herpetological Collection at the Universiti Sains Malaysia, Penang, Malaysia (USMHC), and Zoological Museum of Kasetsart University (ZMKU).

Species Locality Collection number GenBank accession number Reference
Outgroup
Cyrtodactylus bokorensis Cambodia, Kampot FMNH 263228 KT013107 Grismer et al. 2015b
Dixonius melanostictus Thailand (captive) No number HM997153 Ziegler et al. 2016
Dixonius siamensis Cambodia, Pursat Province, Phnom Aural LSUHC 7328 EU054299 Ziegler et al. 2016
Gekko gecko Myanmar, Ayeyarwady Division, Myaungmya District CAS 204952 JN019052 Rösler et al. 2011
Gehyra mutilata Cambodia, Pursat Province, Phnom Aural LSUHC 7379 JN393914 Wood et al. 2017
Hemidactylus frenatus Myanmar, Tanintharyi Division, Kaw Thaung District CAS 229633 HM559629 Bauer et al. 2010
Hemidactylus garnotii Myanmar, Mon State, Kyait Hti Yo Wildlife Sanctuary CAS 222276 EU268364 Bauer et al. 2010
Ca Mau Clade
Cnemaspis boulengerii Vietnam, Ca Mau Province, Con Dao Archipelago LSUHC 9278 KM024710 Grismer et al. 2014
LSUHC 9279 KM024711
Cnemaspis psychedelica Vietnam, Ca Mau Province, Hon Khoai Island LSUHC 9243 KM024827 Wood et al. 2017
LSUHC 9244 KM024828
chanthaburiensis group
Cnemaspis aurantiacopes Vietnam, Kien Giang Province, Hon Dat Hill LSUHC 8610 KM024692 Grismer et al. 2014
LSUHC 8611 KM024693
Cnemaspis caudanivea Vietnam, Kien Giang Province, Hon Tre Island LSUHC 8582 KM024714 Grismer et al. 2014
Cnemaspis chanthaburiensis Cambodia, Pursat Province, Phnom Dalai LSUHC 9338 KM024716 Grismer et al. 2014
Cnemaspis lineogularis Thailand, Prachuap Khiri Khan Province, Kui Buri District, Wat Khao Daeng BYU 62535 KY091231 Wood et al. 2017
ZMKU R 00728 KY091233
Cnemaspis neangthyi Cambodia, Pursat Province, O’Lakmeas LSUHC 8515 KM024767 Grismer et al. 2014
LSUHC 8516 KM024768
Cnemaspis nuicamensis Vietnam, An Giang Province, Nui Cam Hill LSUHC 8646 KM024775 Grismer et al. 2014
LSUHC 8647 KM024776
LSUHC 8648 KM024777
kumpoli group
Cnemaspis biocellata Malaysia, Perlis, Kuala Perlis LSUHC 8789 KM024707 Grismer et al. 2014
LSUHC 8817 KM024708
Malaysia, Perlis, Gua Kelam LSUHC 8818 KM024709
Cnemaspis kumpoli Malaysia, Perlis, Perlis State Park LSUHC 8847 KM024745 Grismer et al. 2014
LSUHC 8848 KM024746
Cnemaspis monachorum Malaysia, Kedah, Langkawi Archipelago, Pulau Langkawi LSUHC 9114 KM024754 Grismer et al. 2014
LSUHC 10807 KM024755
Cnemaspis niyomwanae Thailand, Trang Province, Thum Khao Ting LSUHC 9568 KM024773 Grismer et al. 2014
LSUHC 9571 KM024774
Cnemaspis tarutaoensis Thailand, Satun Province, Mueang Satun District, Ko Tarutao ZMKU R 00761 MK862117 Ampai et al. 2019
ZMKU R 00763 MK862118
ZMKU R 00764 MK862119
argus group
Cnemaspis argus Malaysia, Terengganu, Gunung Lawit LSUHC 8304 KM024687 Grismer et al. 2014
LSUHC 10834 KM024688
Cnemaspis karsticola Malaysia, Kelantan, Gunung Reng LSUHC 9054 KM024736 Grismer et al. 2014
LSUHC 9055 KM024737
affinis group
Cnemaspis affinis Malaysia, Penang, Pulau Pinang LSUHC 6787 KM024682 Grismer et al. 2014
Cnemaspis grismeri Malaysia, Perak, Lenggong LSUHC 9969 KM024722 Grismer et al. 2014
Cnemaspis hangus Malaysia, Pahang, Bukit Hangus LSUHC 9358b KM024728 Grismer et al. 2014
Cnemaspis harimau Malaysia, Kedah, Gunung Jeri LSUHC 9665 KM024730 Grismer et al. 2014
Cnemaspis mahsuriae Malaysia, Kedah, Pulau Langkawi, Gunung Raya LSUHC 11829 KT250634 Grismer et al. 2015a
Cnemaspis mcguirei Malaysia, Perak, Bukit Larut LSUHC 8853 KM024751 Grismer et al. 2014
Cnemaspis narathiwatensis Malaysia, Perak, Belum-Temengor, Sungai Enam USMHC 1347 KM024762 Grismer et al. 2014
USMHC 1348 KM024763
siamensis group
Cnemaspis adangrawi Thailand, Satun Province, Mueang Satun District, Ko Adang ZMKU R 00767 MK862112 Ampai et al. 2019
ZMKU R 00768 ON843665 This study
THNHM 28207 MK862113 Ampai et al. 2019
ZMKU R 00770 MK862114
Thailand, Satun Province, Mueang Satun District, Ko Rawi ZMKU R 00774 ON843666 This study
ZMKU R 00775 MK862115 Ampai et al. 2019
ZMKU R 00776 MK862116
Cnemaspis chanardi Thailand, Trang Province, Nayong District ZMKU R 00988 ON843675 This study
ZMKU R 00989 ON843676
ZMKU R 00990 ON843677
ZMKU R 00991 ON843678
Cnemaspis huaseesom Thailand, Kanchanaburi Province, Sai Yok National Park LSUHC 9455 KM024733 Grismer et al. 2014
LSUHC 9457 KM024734
LSUHC 9458 KM024735
Cnemaspis kamolnorranathi Thailand, Surat Thani Province, Kanchanadit District, Tai Rom Yen National Park ZMKU R 00992 ON843679 This study
ZMKU R 00993 ON843680
ZMKU R 00994 ON843681
ZMKU R 00995 ON843682
ZMKU R 00996 ON843683
Cnemaspis lineatubercularis Thailand, Nakhon Si Thammarat Province, Lan Saka District, Wang Mai Pak Waterfall ZMKU R 00825 MT112890 Ampai et al. 2020
ZMKU R 00828 MT112891
ZMKU R 00829 MT112892
ZMKU R 00830 MT112893
Cnemaspis omari Thailand, Satun Province, Phuphaphet Cave LSUHC 9565 KM024780 Grismer et al. 2014
Malaysia, Perlis, Perlis State Park LSUHC 9978 KM024779
Cnemaspis phangngaensis Thailand, Phang-nga Province, Mueang Phang-nga District, Khao Chang, Phung Chang Cave BYU 62537 KY091234 Wood et al. 2017
BYU 62538 KY091235
Cnemaspis punctatonuchalis Thailand, Prachaup Khiri Khan Province, Thap Sakae BYU 62539 KY091236 Wood et al. 2017
BYU 62540 KY091237
Cnemaspis roticanai Malaysia, Kedah, Pulau Langkawi, Gunung Raya LSUHC 9430 KM024829 Grismer et al. 2014
LSUHC 9431 KM024830
LSUHC 9439 KM024831
Cnemaspis samui sp. nov. Thailand, Surat Thani Province, Ko Samui District, Ko Samui, Hin Lad Waterfall ZMKU R 00966 ON843667 This study
ZMKU R 00967 ON843668
ZMKU R 00968 ON843669
ZMKU R 00974 ON843670
Cnemaspis similan sp. nov. Thailand, Phang-nga Province, Tai Mueang District, Mu Ko Similan National Park, Ko Similan, Ao Nguang Chang ZMKU R 00984 ON843671 This study
ZMKU R 00985 ON843672
ZMKU R 00986 ON843673
ZMKU R 00987 ON843674
Cnemaspis selenolagus Thailand, Ratchaburi Province, Suan Phueng District, Khao Laem Mountain ZMMU R 16391 MW051887 Grismer et al. 2020
AUP 00767 MW051888
Cnemaspis siamensis Thailand, Chumpon Province, Pathio District LSUHC 9474 KM024838 Grismer et al. 2014
LSUHC 9485 KM024839
ZMKU R 00997 ON843684 This study
ZMKU R 00998 ON843685
Cnemaspis thachanaensis Thailand, Surat Thani Province, Tha Chana District, Tham Khao Sonk Hill BYU 62542 KY091239 Wood et al. 2017
BYU 62543 KY091243
BYU 62544 KY091244
Cnemaspis vandeventeri Thailand, Ranong Province, Suk Saran District, Naka BYU 62541 KY091238 Wood et al. 2017

Homologous sequences of 68 Cnemaspis and the seven outgroups Cyrtodactylus bokorensis Murdoch, Grismer, Wood, Neang, Poyarkov, Tri, Nazarov, Aowphol, Pauwels, Nguyen & Grismer, 2019, Dixonius melanostictus (Taylor, 1962), Dixonius siamensis (Boulenger, 1898), Gehyra mutilata Wiegmann, 1834, Gekko gecko (Linnaeus, 1758), Hemidactylus frenatus Duméril & Bibron, 1836 and Hemidactylus garnotii Duméril & Bibron, 1836 (following Wood et al. 2017; Ampai et al. 2020) were downloaded from GenBank. These were aligned to the 21 newly generated sequences of Cnemaspis using the MUSCLE plug-in as implemented in Geneious R11 (Biomatters, Ltd, Auckland, New Zealand). The aligned dataset was partitioned into four partitions consisting of ND2 codon positions and the flanking tRNAs. Molecular phylogenetic relationships were estimated using Bayesian inference (BI) and maximum likelihood (ML). The BI was implemented in MrBayes v3.2.7a (Ronquist et al. 2012) on XSEDE (CIPRES; Miller et al. 2010). The best-fit model of sequence evolution for each partition was estimated using the Bayesian Information Criterion (BIC) as implemented in PartitionFinder2 on XSEDE (Lanfear et al. 2016). The selected models were GTR+I+Γ for each ND2 codon partition and HKY+I+Γ for tRNAs. The BI analysis was performed as two simultaneous runs, each with four Markov chains (three heated and one cold chain), using the default priors and chain temperature set to 0.1 for 20,000,000 generations, with trees sampled every 2,000 generations from the Markov Chain Monte Carlo (MCMC). The first 25% of each run was discarded as burn-in using the “sumt” command. The convergence of the two simultaneous runs, stationary state of each parameter, and the effective sample sizes were evaluated by visualizing the log file in Tracer v1.6 (Rambaut et al. 2014). Nodes with Bayesian posterior probabilities support (BPP) of ≥ 0.95 were considered well-supported (Huelsenbeck and Ronquist 2001; Wilcox et al. 2002).

The ML analysis was implemented using the IQ-TREE web server (Nguyen et al. 2015; Trifinopoulos et al. 2016). The best-fit model of evolution for each partition was estimated using IQ-TREE’s ModelFinder function (Kalyaanamoorthy et al. 2017). Based on the Bayesian Information Criterion (BIC), the TIM+F+I+G4 was the best-fit model for 1st, 2nd, 3rd codon partitions and HKY+F+G4 for tRNAs. The ultrafast bootstrap analysis (UFB; Minh et al. 2013; Hoang et al. 2017) using 10,000 bootstrap pseudo-replicates was used to construct a final consensus ML tree. Nodes with ultrafast bootstrap support (UFB) of ≥ 95 were considered well-supported (Minh et al. 2013). The 50% majority-rule consensus of sampled trees from the BI analysis and the most likely tree in the ML analysis were visualized and edited in FigTree v1.4.4 (Rambaut 2018). Uncorrected pairwise sequence divergences were estimated using a p-distance method with the pairwise deletion option in MEGA 11.0.11 (Tamura et al. 2021).

Morphological measurement and analyses

Coloration and pattern in life was determined by examination of digital images taken of living specimens of all possible age classes prior to preservation. Morphological and meristic data were taken by the first author on the left side of preserved specimens for symmetrical characters, when possible, using digital Mitutoyo CD-6” ASX Digimatic Calipers to the nearest 0.1 mm under a Nikon SMZ745 dissecting microscope. Three body-size classes were established by snout-vent length: small size (< 35 mm), medium size (35–40 mm) and large size (> 40 mm). Only adult individuals, as determined by the presence of secondary sexual characteristics such as pore-bearing precloacal scales or hemipenes in males or visible eggs on ventral side of body or enlarged endolymphatic glands in females, were included for morphometric and meristic measurements. A total of sixteen morphological characters was scored following Grismer et al. (2020), Wood et al. (2017) and Ampai et al. (2020): snout-vent length (SVL, taken from tip of snout to the anterior margin of vent); tail width (TW, at the base of the tail immediately posterior to the postcloacal swelling); tail length (TL, distance from the vent to the tip of the tail, whether original or regenerated) ; forearm length (FL, taken on the dorsal surface from the posterior margin of the elbow while flexed 90° to the inflection of the flexed wrist) ; tibia length (TBL, taken on the ventral surface from the posterior surface of the knee while flexed 90° to the base of the heel); head length (HL, distance from the posterior margin of the retroarticular process of the lower jaw to the tip of the snout); head width (HW, at the angle of the jaws) ; head depth (HD, the maximum height of head from the occiput to the throat) ; axilla-groin length (AG, taken from the posterior margin of the forelimb at its insertion point on the body to the anterior margin of the hind limb at its insertion point on the body); eye diameter (ED, the maximum horizontal diameter of the eyeball) ; eye-ear distance (EE, measured from the anterior margin of the ear opening to the posterior edge of the eyeball) ; ear length (EL, taken from the greatest vertical distance of the ear opening) ; eye-nostril distance (EN, measured from the anterior most margin of the eyeball to the posterior margin of the external nares); eye-snout distance (ES, measured from the anterior margin of the eyeball to the tip of snout); internarial distance (IN, measured between the medial margins of the nares across the rostrum) and inner orbital distance (IO, the width of the frontal bone at the level of the anterior edges of the orbit).

Meristic characters states of scales and quantitative observations of pattern and structures were evaluated under a Nikon SMZ745 dissecting microscope. Meristic characters taken were modified from Grismer et al. (2014, 2020), Wood et al. (2017) and Ampai et al. (2020) as follows: number of supralabial (SupL) and infralabial (InfL) scales, counted from below the middle of the orbit to the rostral and mental scales, respectively; texture of scales on the anterior margin of the forearm; number of paravertebral tubercles (PVT) between limb insertions, counted in a straight line immediately left of the vertebral column; general size (i.e., strong, moderate, weak) and arrangement (i.e., random or linear) of dorsal body and tail tuberculation; number of subdigital lamellae beneath the fourth toe (4TL), counted from the base of the first phalanx to the claw; and number of postcloacal tubercles on each side of tail base. Categorical character states examined were: presence or absence of dark round spots on the nape and anterior portion of the body; the presence or absence of ocelli on the shoulder region; coloration of dorsal blotching on head, body, limbs and tail; presence or absence of a row of enlarged, widely spaced, tubercles along the ventrolateral edge of the body flank between limb insertions; number, orientation and shape of pore-bearing precloacal scales; and relative size of subcaudal and subtibial scales. Descriptions refer to right (R) and left (L) sides of the body.

Statistical analyses were used to compare differences in size and shape within the siamensis group, including populations from Ko Samui (N = 18), Ko Similan (N = 4) and the seven described species C. adangrawi (N = 8), C. chanardi (N = 7), C. lineatubercularis (N = 19), C. omari (N = 5), C. phangngaensis (N = 3), C. siamensis (N = 8) and C. thachanaensis (N = 6). Due to lack of available measurements, six species in the siamensis group (C. huaseesom, C. kamolnorranathi, C. punctatonuchalis, C. roticanai, C. selenolagus and C. vandeventeri) were not included in the morphometric analyses. All specimens were assigned to nine putative operation taxonomic units (OTUs) based on the mtDNA results: OTU1 (= Ko Samui population), OTU2 (= Ko Similan population), OTU3 (= C. adangrawi), OTU4 (= C. chanardi), OTU5 (= C. lineatubercularis), OTU6 (= C. omari), OTU7 (= C. phangngaensis), OTU8 (= C. siamensis) and OTU9 (= C. thachanaensis). TL (tail length) was excluded due to their different conditions (e.g., complete, broken, and regenerated). All morphological variables were adjusted for differences in ontogenetic composition by the allometric equation:

Xadj = log(X) – b[log(SVL) – log(SVLmean)]

where Xadj is the corrected value of the morphometric variable; X is the unadjusted value of dependent variable; b is the within-clade coefficient of the linear regression of each original character value (X) against SVL; SVL = snout-vent length; and SVLmean = overall mean of SVL of all nine OTUs (Thorpe 1975, 1983; Turan 1999; Lleonart et al. 2000; Chan and Grismer 2021).

Univariate analyses were implemented in the Paleontological statistics software (PAST v4.07b; Hammer et al. 2001) using an analysis of variance (ANOVA) to compare morphological differentiation in traits among nine putative OTUs (OTU1–OTU9). Morphological characters with equal variances and having p-values less than 0.05 were subjected to a Tukey’s honestly significant difference (HSD) test to identify all pairwise comparisons among sample means for significant differences (p < 0.05). Moreover, multivariate analyses were performed using the platform R v3.2.1 (R Core Team 2018). A principal component analysis (PCA) using the built-in R functions: “prcomp” (R Core Team, 2018) and “ggplot2” (Wickham, 2016) was performed to find the best low-dimensional space of morphological variation in data. Principal components (PCs) with eigenvalues greater than 1.0 were retained in accordance with the criterion of Kaiser (1960). A discriminant analysis of principal components (DAPC) was applied using the “adegenet” package in R (Jombart 2008) to characterize clustering and distance in the morphospace of the two new groups compared to the seven named congeners of the siamensis group, as delimited by the molecular phylogenetic analyses. The DAPC relied on transformed and scaled data from the PCA as a prior step to find the linear combinations of morphological variables having the greatest between-group variance and the smallest within-group variance of linear distances (Jombart et al. 2010).

Results

Molecular analyses

The aligned dataset contained 1,310 characters of 89 individuals of Cnemaspis and seven individuals of the outgroup species (Fig. 1A). Estimated base frequencies of the Cnemaspis dataset excluding outgroups were A = 30.52%, C = 34.65%, G = 12.59% and T = 22.24%. The BI and ML phylogenetic trees had similar topologies, with only minor differences in positions of unresolved branches (Fig. 1B). The maximum standard deviation of split frequencies among the two simultaneous BI runs was 0.016685. The average standard deviation of split frequencies among the two simultaneous BI runs was 0.002622 and ESS values were greater than or equal to 6,152 for all parameters. The maximum likelihood value of the best ML tree was lnL = –81,696.218.

Figure 1. 

The single best tree from 10,000 Maximum likelihood bootstrap replicates based on 1,310 bp of the mitochondrial NADH dehydrogenase subunit 2 (ND2) and flanking tRNAs from geckos of the genera Cnemaspis, Cyrtodactylus, Dixonius, Gekko, Hemidactylus and Gehyra A shown in full view B relevant clades of Cnemaspis siamensis group in close-up view C map illustrating the type locality of all species in the siamensis group. Nodal support values are ultrafast bootstrap values from maximum likelihood analysis of the same dataset followed by posterior probabilities of Bayesian analysis.

Cnemaspis samples from Ko Samui and Ko Similan represented well-supported independent lineages (100 UFB, 1.0 BPP) and were nested within the siamensis group (Fig. 1B). The Ko Samui samples were well-supported for ML (99 UFB) but lacked support from BI (0.56 BPP) as the sister lineage to C. kamolnorranathi from its type locality at Ban Nasan District, Surat Thani Province, Thailand. The Ko Samui samples had uncorrected p-distances of 9.10–9.73% from C. kamolnorranathi and 8.86–26.83% from the other species in the siamensis group. The Ko Similan samples were recovered as a well-supported lineage (100 UFB, 1.0 BPP) and sister to C. phangngaensis (Fig. 1B). The Ko Similan samples had uncorrected p-distances of 8.16% from C. phangngaensis and 9.34–27.11% from the other species in the siamensis group. The Ko Samui and the Ko Similan populations had within population uncorrected p-distances of 0.00–1.11% and 0.00%, respectively (Table 2).

Table 2.

Mean (min-max) uncorrected pairwise distances (%) within the Cnemaspis siamensis group based on 1,310 bp of the mitochondrial ND2 gene and flanking tRNAs. Number in bold are within species divergence. N = number of individuals.

Species N 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
1. Cnemaspis samui sp. nov. 4 0.55
(0.00–1.11)
2. Cnemaspis similan sp. nov. 4 11.50 0.00
(11.32–11.56) (0.00–0.00)
3. C. adangrawi 9 9.32 11.12 1.58
(8.87–9.68) (11.08–11.18) (0.00–3.01)
4. C. chanardi 4 8.92 9.40 7.80 0.26
(8.86–9.10) (9.34–9.58) (7.52–8.15) (0.00–0.32)
5. C. huaseesom 3 23.00 (22.34–23.67) 23.19 (22.72–24.10) 22.47 (22.01–23.27) 22.63 (22.10–23.58) 0.31 (0.00–0.78)
6. C. kamolnorranathi 5 9.55 (9.10–9.73) 11.73 (11.72–11.80) 9.08 (8.86–9.44) 8.38 (8.23–8.54) 23.48 (23.13–24.10) 0.08 (0.00–0.24)
7. C. lineatubercularis 4 14.61 (14.10–14.96) 16.15 (15.92–16.39) 14.19 (13.63–14.77) 14.04 (13.63–14.41) 24.13 (23.02–25.41) 14.55 (14.23–14.89) 0.11 (0.00–0.25)
8. C. omari 2 10.98 (10.17–11.81) 11.42 (10.79–12.06) 8.20 (6.77–9.40) 9.36 (8.72–9.96) 24.74 (24.00–25.60) 10.81 (10.04–11.65) 16.15 (15.07–17.04) 2.36 (0.00–4.72)
9. C. phangngaensis 2 9.68 (9.58–9.81) 8.16 (8.16–8.16) 9.00 (8.87–9.21) 7.48 (7.36–7.75) 21.69 (21.37–22.29) 10.23 (10.06–10.36) 15.62 (15.24–16.01) 10.50 (9.70–11.33) 0.16 (0.00–0.32)
10. C. punctatonuchalis 2 23.53 (21.83–24.93) 25.24 (23.67–26.82) 23.19 (21.75–24.53) 23.74 (22.46–24.93) 16.70 (15.57–17.59) 24.34 (23.02–25.62) 23.72 (21.82–25.62) 24.79 (22.75–27.82) 24.21 (22.78–25.65) 0.75 (0.00–1.5)
11. C. roticanai 3 10.57 (10.21–10.83) 11.21 (10.61–11.53) 7.69 (7.04–8.20) 8.83 (8.31–9.36) 24.15 (23.27–24.50) 10.23 (9.64–10.50) 14.94 (13.80–15.76) 8.34 (7.13–8.99) 9.00 (8.39–9.36) 23.14 (21.83–24.03) 0.32 (0.00–0.69)
12. C. selenolagus 2 22.75 (22.00–23.15) 22.69 (22.48–22.91) 21.53 (21.13–21.88) 21.32 (20.97–21.72) 16.08 (15.44–17.00) 22.06 (21.84–22.28) 22.46 (21.91–22.99) 23.33 (23.02–23.57) 21.35 (21.05–21.66) 15.93 (15.29–17.13) 22.15 (21.21–22.89) 0.28 (0.00–0.56)
13. C. siamensis 4 22.04 (20.83–23.59) 23.21 (21.73–24.88) 22.20 (21.21–23.39) 21.70 (20.64–23.11) 19.28 (18.73–19.59) 22.27 (21.12–23.83) 23.00 (22.30–24.64) 23.30 (21.21–24.58) 21.68 (20.25–23.29) 19.49 (18.12–20.70) 23.26 (21.41–24.87) 19.10 (18.72–19.55) 0.55 (0.00–1.74)
14. C. thachanaensis 3 23.10 (22.66–23.29) 24.27 (24.12–24.50) 23.43 (22.97–23.89) 22.59 (22.35–22.89) 20.98 (20.79–21.11) 23.04 (22.91–23.19) 24.08 (23.65–24.58) 25.03 (24.88–25.24) 23.44 (23.29–23.71) 20.83 (20.05–21.57) 24.79 (24.09–25.32) 20.73 (20.49–21.00) 14.31 (13.86–15.21) 0.67 (0.00–1.74)
15. C. vandeventeri 1 26.76 (26.56–26.83) 27.11 (27.11–27.11) 26.36 (26.15–26.42) 26.49 (26.42–26.56) 20.75 (20.66–20.80) 27.52 (27.52–27.52 25.23 (24.65–25.86) 27.36 (27.11–27.60) 26.71 (26.59–26.83) 20.89 (20.89–20.89) 27.71 (27.66–27.80) 23.24 (23.00–23.48) 13.84 (13.64–14.21) 17.45 (17.22–17.63) 0.00 (0.00–0.00)

Cnemaspis chanardi and C. kamolnorranathi samples from their type localities (Fig. 1B, C) represented well-supported independent lineages (100 UFB, 1.0 BPP). Cnemaspis chanardi was well-supported (100 UFB, 1.0 BPP) as sister to a clade comprised of C. phangngaensis and the Ko Similan population. Cnemaspis kamolnorranathi was recovered as the sister lineage to the Ko Samui population (99 UFB, 0.56 BPP). Cnemaspis chanardi and C. kamolnorranathi had uncorrected p-distances of 7.36–26.56% and 8.23–27.52% from the other species in the siamensis group, respectively. The within population uncorrected p-distances of C. chanardi and C. kamolnorranathi were 0.00–0.32% and 0.00–0.24%, respectively.

Morphological analyses

Univariate analysis of variance (ANOVA) showed significant differences (p < 0.05) in morphometric characters among the Ko Samui population (OTU1), the Ko Similan population (OTU2), and seven congeners (OTU3–OTU9) in the siamensis group (Suppl. material 1: Table S1). These were also significantly different in the Tukey’s HSD pairwise tests (p < 0.05; Table 3). Multivariate analysis of PCA of nine species of Cnemaspis revealed morphological differences on a scatter plot of the first two components having eigenvalues > 1.0 (Fig. 2A). These first two components that accounted for 71.8% of the variation in the dataset showed that the Ko Samui and the Ko Similan samples clustered separately from seven congeners in the siamensis group (Table 4). The first principal component (PC1) accounted for 54.6% of the of variation and was most heavily loaded on five head characters (head length, head width, head depth, eye-ear distance, and eye-snout distance), two body characters (tibia length and axillar-groin length), and one tail character (tail width). The second principal components (PC2) accounted for an additional 17.2% of the variation and was heavily loaded on three head characters (internarial distance, interorbital distance, and ear length). Factor loadings of each component of 15 morphometric characteristics from nine OTUs of the siamensis group are provided in Table 4. The ordination of the first two components showed that the Ko Samui population overlapped with the Ko Similan population and C. thachanaensis. The DAPC (94.09% of cumulative variance) revealed the Ko Samui and the Ko Similan populations as distinct clusters, with general clustering of seven congeners in the siamensis group (Fig. 2B).

Table 3.

Pairwise significant difference matrix from 15 size-corrected morphometric measurements of Cnemaspis samui sp. nov. and Cnemaspis similan sp. nov. compared with seven congeners of the Cnemaspis siamensis group (Tukey’s HSD; p< 0.05). Measurement abbreviations are defined in the text.

No. Species 1 2 3 4 5 6 7 8
1 Cnemaspis samui sp. nov.
2 Cnemaspis similan sp. nov. SVL, FL, TBL, AG, HL, HW, IN, IO
3 C. adangrawi TBL, IN, IO HW, IN, IO
4 C. chanardi FL, EL, IN, IO SVL, TW, FL, HL, HW, IN, IO FL, EL, IO
5 C. lineatubercularis TBL, HL, HW, EL, IN, IO SVL, TW, FL, TBL, HL, HW, IN, IO SVL, FL, TBL, HL, HW, EL, IO TBL, HL, HW
6 C. omari TW, FL, TBL, HL, HW, EL, IN, IO SVL, TW, HL, HW, IN, IO TW, FL, HL HW, ES, EL, IO FL, HW, IN FL, TBL, IN
7 C. phangngaensis TW, TBL, IN TW, IN TW, IO TW, FL TW, FL, TBL, HL HL, IN
8 C. siamensis SVL, TW, FL, TBL, HL, HW, ES, IN, IO SVL, TW, FL, TBL, AG, HL, HW, ES, IN, IO SVL, TW, FL, TBL, AG, HL, HW, ES, IN SVL, TW, TBL, AG, HL, HW, ES, EL, IN, IO SVL, TW, TBL, ES, IN, IO SVL, FL, TBL, ES SVL, FL, TBL, HL, ES, IN, IO
9 C. thachanaensis SVL, TW, FL, TBL, AG, HL, HW, ES, EN, IN, IO SVL, FL, TBL, AG, HL, HW, ES, EN, EL, IN SVL, TW, FL, TBL, AG, HL, HW, ES, EN, IN, IO SVL, TBL, AG, HL, HW, ES, EN, EL, IN, IO SVL, TBL, AG, HW, ES, EN, EL, IN, IO SVL, FL, TBL, AG, ES, EN, EL, IN SVL, FL, TBL, AG, HL, HW, ES, EN, EL, IO EN, EL, IN
Table 4.

Summary of proportions of variance, standard deviation, eigenvalues and factor loadings from the 10 first principal components (PC) of 14 size-adjusted morphometric characters of two new insular species Cnemaspis samui sp. nov., Cnemaspis similan sp. nov. and seven congeners of the Cnemaspis siamensis group including C. adangrawi, C. chanardi, C. lineatubercularis, C. omari, C. phangngaensis, C. siamensis and C. thachanaensis. Values highlighted in bold represent those with the greatest contribution (≥0.30). Measurement abbreviations are defined in the text.

Character PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10
Proportion of Variance 54.6 17.2 6.2 5.7 5.1 4.3 2.3 1.3 1.0 0.8
Standard deviation 2.77 1.55 0.93 0.89 0.84 0.78 0.57 0.42 0.37 0.33
eigenvalues 7.65 2.406 0.872 0.793 0.711 0.606 0.32 0.179 0.137 0.112
TW -0.293 -0.083 0.266 0.296 -0.093 0.017 -0.747 0.069 -0.054 0.169
FL -0.263 -0.125 -0.375 -0.362 0.414 -0.207 -0.317 -0.01 0.005 0.374
TBL -0.308 0.091 -0.217 -0.171 0.401 0.182 0.021 0.123 0.217 -0.454
AG -0.302 0.233 -0.04 -0.132 -0.093 0.247 0.069 -0.708 -0.358 0.163
HL -0.324 -0.118 -0.063 -0.020 0.037 0.360 0.229 0.310 0.064 0.371
HW -0.328 -0.097 -0.009 -0.030 -0.115 0.418 0.100 0.016 -0.145 -0.267
HD -0.321 -0.073 0.332 0.211 -0.114 0.066 0.175 0.170 -0.108 0.095
ED -0.264 0.079 0.422 -0.232 0.237 -0.518 0.161 0.132 -0.458 -0.196
EE -0.323 -0.005 -0.032 0.422 0.145 -0.073 0.080 0.071 0.209 -0.164
ES -0.304 0.191 0.011 0.198 -0.086 -0.370 0.098 -0.408 0.532 -0.027
EN -0.210 0.208 -0.563 0.093 -0.500 -0.325 0.119 0.308 -0.236 0.083
EL -0.105 0.439 0.282 -0.558 -0.364 0.087 -0.158 0.214 0.357 0.004
IN -0.096 -0.565 0.172 -0.231 -0.137 -0.155 0.325 -0.085 0.254 0.292
IO 0.113 0.538 0.14 0.211 0.370 0.079 0.236 0.131 0.032 0.473
Figure 2. 

Multivariate analysis results of principal component analysis (PCA) and discriminant analysis of principal component (DAPC) of 14 morphological variables for nine OTUs (N = 78 individuals) of Cnemaspis in the siamensis group A PCA scatterplot showing morphospatial differentiation among nine species in the siamensis group B DAPC ordination of six PCs and discriminant eigenvalues showing morphospatial variation among nine species in the siamensis group.

Taxonomic hypotheses

The Ko Samui and Ko Similan populations distinctly differed from all congeners in the C. siamensis group that were evaluated based on molecular analyses of mtDNA with high genetic distances, as well in the univariate analyses (ANOVA and Tukey’s HSD pairwise) and the multivariate analyses (PCA and DAPC) of morphology. Based on these corroborating lines of evidence, we hypothesize that the Ko Samui and the Ko Similan populations each represent new species, as described below.

Systematics

Cnemaspis samui sp. nov.

Figs 3, 4, 5, 6 Ko Samui Rock Gecko Thai common name: Jing Jok Niew Yaow Ko Samui (จิ้งจกนิ้วยาวเกาะสมุย)

Holotype

(Fig. 3). ZMKU R 00974, adult male from Thailand, Surat Thani Province, Ko Samui District, Ang Thong Subdistrict, Hin Lad Waterfall (9°31.151'N, 99°57.598'E; 150 m a.s.l.), collected on 19 June 2018 by Natee Ampai, Attapol Rujirawan, Siriporn Yodthong and Korkhwan Termprayoon.

Figure 3. 

Adult male holotype of Cnemaspis samui sp. nov. (ZMKU R 00974) from Hin Lad Waterfall, Ko Samui, Ang Thong Subdistrict, Ko Samui District, Surat Thani Province, Thailand, in life A dorsolateral view B dorsal view C lateral view D ventral view E precloacal region showing distribution of pore-bearing scales (black arrows). Scale bars in dorsal, lateral, and ventral views: 10 mm.

Paratypes

(Fig. 4). Seventeen paratypes (adult males = 14, adult females = 3). Five adult males (ZMKU R 00966–00970), same collection data as holotype except collected on 26 September 2015 by Natee Ampai, Attapol Rujirawan, Siriporn Yodthong, Korkhwan Termprayoon, and Anchalee Aowphol. Nine adult males (ZMKU R 00971–00973, ZMKU R 00975–00979 and ZMKU R 00983) and three adult females (ZMKU R 00980–00982), same data as holotype.

Figure 4. 

Coloration of Cnemaspis samui sp. nov. in dorsolateral view A adult male holotype ZMKU R 00974 B adult male paratype ZMKU R 00970 C adult male paratype ZMKU R 00971.

Diagnosis

Cnemaspis samui sp. nov. differs from all other members of the C. siamensis group by having the following combination of characters: (1) SVL 37.0–42.3 mm in adult males (mean 39.90 ± 1.98 mm; N = 15) and 36.4–41.6 mm in adult females (mean 39.75 ± 2.91 mm; N = 3); (2) eight or nine supralabial and infralabial scales; (3) ventral scales keeled (4) 5–8 pore-bearing precloacal scales in males, arranged in a chevron, separated, pore rounded in males; (5) 25–27 paravertebral tubercles, arranged randomly; (6) 4–6 small, subconical spine-like tubercles present on lower flanks; (7) 22–25 subdigital lamellae under 4th toe; (8) enlarged median subcaudal scale row present; (9) ventrolateral caudal tubercles anteriorly present; (10) one or two postcloacal tubercles on lateral surface of hemipenial swellings at the base of tail in males; and (11) gular region, abdomen, limbs and subcaudal region yellowish only in males.

Description of holotype

An adult male in good state of preservation; 42.3 mm SVL; head relatively moderate in size (HL/SVL 0.27), narrow (HW/SVL 0.16), flattened (HD/HL 0.39), depressed (HD/SVL 0.11), and head distinct from neck; snout moderate (ES/HL 0.43), in lateral profile slightly concave; loreal region slightly inflated, canthus rostralis not prominent, smoothly rounded; postnasal region constricted medially; scales of rostrum round, juxtaposed, keeled, larger than conical scales on occiput; weak, supraorbital ridges; gular and throat scales granular, keeled and round; shallow frontorostral sulcus; eye large (ED/HL 0.21) with round pupil; orbit with extra-brillar fringe scales slightly largest anteriorly; scales on interorbitals and supercilium slightly keeled; eye to ear distance greater than eyes diameter (EE/ED 1.33); ear opening vertical, oval, taller than wide (EL/HL 0.09); rostral slightly concave; rostral bordered posteriorly by supranasals and internasal; rostral in contact laterally with first supralabials; 9R,L supralabials decreasing in size posteriorly; 8R,L infralabials decreasing in size posteriorly; nostril small, oval, oriented dorsoposteriorly, surrounded posteriorly by small postnasal scales; mental scales enlarged, subtriangular, concave, extending to level of second infralabials, bordered posteriorly by three large postmentals.

Body relatively slender, elongate (AG/SVL 0.42); small, keeled, dorsal scales equal in size throughout body intermixed with several large, keeled, scattered, conical tubercles; 26 paravertebral tubercles randomly arranged; four small, subconical spine-like tubercles on flanks; tubercles present on lower flanks; tubercles extend from occiput to tail; pectoral and abdominal scales keeled, round, flat, slightly larger than dorsal and not larger posteriorly; ventral scales of brachia smooth, raised and juxtaposed; eight separated pore-bearing precloacal scales, arranged in a chevron, with rounded pores; precloacal depression absent; femoral pores absent.

Fore and hind limbs moderately elongate, slender; scales beneath forearm slightly raised, smooth and subimbricate; subtibial scales keeled; palmar scales smooth, flat and subimbricate; digits long, slender, distinctly inflected joint with strong, slightly recurved claws; subdigital lamellae unnotched; lamellae beneath first phalanges wide; lamellae beneath phalanx immediately following inflection granular; lamellae of distal phalanges wide; lamellae beneath inflection large; interdigital webbing absent; enlarged submetatarsal scales on 1st toe present; total subdigital lamellae on fingers I–V: 18-21-22-24-23 (right manus), 18-21-22-24-23 (left manus); fingers increase in length from first to fourth with fifth nearly equal in length as fourth; relative length of fingers IV>V>III>II>I; total subdigital lamellae on toes I–V: 14-20-21-24-23 (right pes), 14-(broken)-21-24-23 (left pes); toes increase in length from first to fourth with fifth nearly equal in length as fourth; relative length of toes IV>V>III>II>I.

Tail complete, entire cylindrical, relatively slender, swollen at the base; tail length (TL) 52.2 mm; tail length longer than snout-vent length (TL/SVL 1.23); subcaudal scales keeled, juxtaposed, larger than dorsal scales of the tail; shallow, middorsal furrow; deeper lateral caudal furrow present; enlarged, transverse caudal tubercles arranged in segmented whorls, encircling tail; enlarged median subcaudal scale row present; caudal tubercles present between upper and lower of lateral furrow; 1R,L enlarged postcloacal tubercle at lateral surface of hemipenial swellings at the base of tail.

Measurements of holotype

(in mm; Table 5). SVL 42.3; TL (complete tail) 52.2; TW 4.4; FL 6.5; TBL 7.9; AG 17.9; HL 11.5; HW 6.9; HD 4.5; ED 2.5; EE 3.3; ES 5.0; EN 4.0; EL 1.0; IN 1.1; IO 3.3.

Table 5.

Descriptive measurements in millimeters and characters of the type series of Cnemaspis samui sp. nov. H = holotype; P = paratype; – = data unavailable or absent; C = complete; B = broken; R = regenerated. Measurement abbreviations are defined in the text.

Characters/Museum Number ZMKU R 00974 ZMKU R 00966 ZMKU R 00967 ZMKU R 00968 ZMKU R 00969 ZMKU R 00970 ZMKU R 00971 ZMKU R 00972 ZMKU R 00973 ZMKU R 00975 ZMKU R 00976 ZMKU R 00977 ZMKU R 00978 ZMKU R 00979 ZMKU R 00983 ZMKU R 00980 ZMKU R 00981 ZMKU R 00982
Type series H P P P P P P P P P P P P P P P P P
Sex Male Male Male Male Male Male Male Male Male Male Male Male Male Male Male Female Female Female
SVL 42.3 40.1 41.2 40.8 37.0 38.7 41.7 41.5 40.7 41.0 40.4 35.6 40.1 36.7 40.6 36.4 41.2 41.6
Tail C C C R B C R C R B B C C C C C R R
TL 52.2 50.8 57.8 56.2 44.3 48.8 51.3 59.3 40.6 28.7 47.6 54.8 48.6 59.6 46.1 44.0 16.4
TW 4.4 3.9 3.8 4.0 3.9 4.0 4.2 4.2 4.1 4.3 4.4 3.6 4.1 3.7 4.1 3.6 4.2 3.9
FL 6.5 6.3 6.3 6.2 6.2 6.1 6.3 6.2 6.1 6.5 6.8 6.2 6.2 6.0 6.1 6.2 6.2 6.1
TBL 7.9 7.5 7.6 7.6 7.5 7.5 7.7 7.6 7.7 7.6 7.8 7.2 7.6 6.9 7.7 7.1 7.8 7.7
AG 17.9 17.7 17.7 17.7 16.1 16.1 17.7 17.6 17.7 17.7 17.6 15.5 17.6 16.1 17.8 15.2 17.9 17.9
HL 11.5 11.2 11.3 11.2 10.8 10.8 11.4 11.6 10.7 11.4 11.1 9.8 10.8 10.0 11.4 10.6 11.3 10.8
HW 6.9 6.6 6.9 6.8 6.6 6.6 6.8 6.8 6.8 6.8 6.7 6.2 6.7 6.2 6.9 6.2 6.9 6.8
HD 4.5 4.2 4.3 4.2 4.1 4.1 4.4 4.3 4.3 4.4 4.4 3.8 4.3 3.9 4.4 3.8 4.4 4.4
ED 2.5 2.3 2.4 2.2 2.2 2.3 2.4 2.4 2.1 2.2 2.2 2.3 2.2 2.2 2.4 2.2 2.4 2.4
EE 3.3 3.1 3.3 3.2 3.1 3.1 3.2 3.2 3.1 3.2 3.2 2.9 3.2 3.0 3.2 2.9 3.2 3.2
ES 5.0 4.9 4.9 4.9 4.5 4.6 4.8 4.8 4.7 4.9 4.9 4.6 4.9 4.7 4.8 4.5 4.9 4.9
EN 4.0 3.7 3.7 3.7 3.8 3.7 4.0 3.9 3.7 3.8 3.7 3.4 3.6 3.5 3.9 3.5 4.0 3.9
EL 1.0 0.9 0.8 0.8 0.9 0.7 0.9 1.0 1.0 0.9 0.9 0.9 0.8 0.9 0.9 0.9 0.9 0.8
IO 3.3 3.1 3.3 3.2 3.0 3.2 3.2 3.1 3.1 3.2 3.1 2.8 3.1 2.8 3.2 2.8 3.3 3.3
IN 1.1 1.0 1.1 1.0 0.9 1.0 1.1 1.0 1.0 1.0 1.0 1.0 0.9 1.0 1.1 1.0 1.0 1.1
Supralabial scales 9 9 9 9 9 9 8 9 8 9 9 9 9 9 9 9 9 9
Infralabial scales 8 9 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8
No. of precloacal pores 8 7 8 5 6 8 7 8 7 6 7 8 7 5 7
Precloacal pore continuous (1) or separated (0) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Precloacal pores elongate (1) or round (0) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
No. of paravertebral tubercles 26 26 25 27 26 27 27 26 27 25 27 26 25 27 27 27 27 26
Tubercles linearly arranged (1) or more random (0) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Tubercles present (1) or absent (0) on lower flanks 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
No. of 4th toe lamellae 24 23 25 25 25 25 23 25 24 24 25 22 25 25 25 24 24 25
Lateral caudal furrows present (1) or absent (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Pectoral scales keeled (1) or smooth (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Ventral scales on thigh keeled (1) or smooth (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Subcaudal keeled (1) or smooth (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Subtibial scales keeled (1) or smooth (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Enlarged median subcaudal scale row (1) or not (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
Caudal tubercles restricted to the single paravertebral row on each side (1) or not (0) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1

Coloration in life

(Figs 3, 4A). Dorsal ground color of head dark brown, top of head and snout bearing small, diffuse, finely speckled with yellowish spots; 3R,L thin, and faint dark postorbital stripes extending from eye to nape; pupil black with orange streak; irregular, pale yellowish marking on nape; a single yellowish prescapular crescent on shoulder each side, located at forelimb insertion dorsoanteriorly; dorsal ground color of body, limbs and tail brown overlain with black irregular blotches; two dark blotches form a bipartite pattern on nape; light-grey vertebral blotches extending from the nape to tail; flanks with scattered, incomplete light-grey to yellowish blotches becoming smaller posteriorly; tubercles on the whole body white or yellow; subconical spine-like yellowish tubercles on lower flanks; digits with dark brown and yellow bands; dorsum caudal bands light-grey and dark brown; ventral surfaces grayish-white intermixed with yellowish blotches on side of body; ventral pattern sexually dimorphic, gular, flanks, and caudal regions yellowish only in males; no dark markings on gular and belly; ventral side of caudal yellowish and indistinct bands.

Coloration in preservative

(Figs 5, 6). Dorsal ground color of head, body, limbs and tail darker brown than coloration in life; indistinct, irregular vertebral blotches; all yellowish spots and markings on head, body, limbs, and tail faded to whitish gray; banding on the tail faded and less prominent; ventral surface whitish gray with indistinct darker marking; gular, pectoral and tail regions with faint dark blotches.

Figure 5. 

Adult male holotype of Cnemaspis samui sp. nov. (ZMKU R 00974) from Hin Lad Waterfall, Ko Samui, Ang Thong Subdistrict, Ko Samui District, Surat Thani Province, Thailand, in preservative. A dorsal view B ventral view C dorsal view of trunk. Scale bar in dorsal, and ventral views: 10 mm.

Figure 6. 

Paratypes of Cnemaspis samui sp. nov. in preservative. A dorsal view B ventral view; from left to right, top panel: ZMKU R 00966–00972; middle panel: ZMKU R 00973–00980; bottom panel: ZMKU R 00981–00983. Scale bars in dorsal and ventral views: 10 mm.

Variation and additional information

Most paratypes closely resemble the holotype in all aspect of pattern and coloration. Morphometric and meristic variation within the type series is presented in Table 5. Some paratypes differ in their degree of vertebral blotches. Sexual dimorphism in color pattern was apparent, as all adult male paratypes have yellowish coloration in the gular, flanks and caudal regions but this yellowish coloration was absent in females. ZMKU R 00968, ZMKU R 00971, ZMKU R 00973 (three adult males), and ZMKU R 00981–00982 (two adult females) have regenerated tails of uniform tan coloration. ZMKU R 00969 and ZMKU R 00975 (two adult males) have broken tail tips. ZMKU R 00976 (one adult male) has approximately three-fourth of the tail broken. ZMKU R 00966–00969, ZMKU R 00971, ZMKU R 00977, ZMKU R 00980, and ZMKU R 00983 (eight adult males) have paler dorsal markings that more resemble transverse bands than paravertebral blotches. ZMKU R 00969 and ZMKU R 00983 (two adult males) have 2R,1L enlarged postcloacal tubercles on the lateral surface of the hemipenial swelling at the base of tail.

Distribution

Cnemaspis samui sp. nov. is currently only known from the type locality at Hin Lad Waterfall (9°31.151'N, 99°57.598'E; 150 m a.s.l.; Fig. 7), Ang Thong Subdistrict, Ko Samui District, Surat Thani Province, Thailand, approximately 35 km off the mainland of Don Sak District, Surat Thani Province in the Gulf of Thailand.

Figure 7. 

Habitats of Cnemaspis samui sp. nov. at the type locality A lowland evergreen forest with granitic outcrops B rocky stream outcrops along Lipa Yai Canal of Hin Lad Waterfall, Ko Samui, Ang Thong Subdistrict, Ko Samui District, Surat Thani Province, Thailand.

Natural history

The type locality is surrounded by lowland evergreen forest with granitic rocky outcrops along Lipa Yai Canal in the western part of Ko Samui. All specimens of C. samui sp. nov. were found along rocky stream outcrops of Hin Lad Waterfall during the day (1435–1752 h) and night (1800–1845 h) with air temperatures of 26.2–30.1 °C and relative humidity of 76.9–92.7%. Their microhabitats in rocky boulders were relatively dry and cool. The male holotype was found at night (1845 h) perched upside down on an overhanging surface of a granitic rock boulder near a stream. Most specimens were found on or within deep cracks or crevices of boulders, or in shaded areas of the boulder near a stream, except that ZMKU R 00969 was found on a tree trunk and ZMKU R 00977 was found in a soil hole at the base of a boulder. Two gravid females ZMKU R 00981–00982 were carrying one or two eggs in July 2018. Some juveniles (not collected) were mostly found perched on vegetation (e.g., log, vine, tree root). Cnemaspis samui sp. nov. is assumed to be a diurnal rock-dwelling species. During the day, geckos were found to be active, wary and fast-moving. They were most often observed clinging upside down to the undersides of rock boulders and within deep crevices. When disturbed, they would quickly move to deeper cover and hide in the shaded area between boulder and the ground. At night, they were found to be inactive, slow moving, sheltered in crevices or cracks on rock walls, or sleeping on vegetation near rock boulders, making them easier to approach than during the day. During field surveys, the larger nocturnal gekkonid Cyrtodactylus zebraicus (Taylor, 1962) was found in sympatry on the ground and vegetation near a stream.

Etymology

The specific epithet samui is a noun in apposition and refers to the type locality of Ko Samui.

Comparisons

Cnemaspis samui sp. nov. is distinguished from all members of the siamensis group (C. adangrawi, C. chanardi, C. huaseesom, C. kamolnorranathi, C. lineatubercularis, C. omari, C. phangngaensis, C. punctatonuchalis, C. selenolagus, C. siamensis, C. thachanaensis, and C. vandeventeri) by having a unique combination of morphological characteristics (Table 6) and uncorrected pairwise sequence divergences of mtDNA (ND2) of 8.86–26.83% (Table 2).

Table 6.

Meristic character state and color pattern of species in the Cnemaspis siamensis group. SVL taken in millimeters and measurement abbreviations are defined in the text. – = data unavailable, w = weak.

Characters / Species Cnemaspis samui sp. nov. Cnemaspis similan sp. nov. C. adangrawi C. chanardi C. huaseesom C. kamolnorranathi C. lineatubercularis C. omari C. phangngaensis C. punctatonuchalis C. selenolagus C. siamensis C. thachanaensis C. vandeventeri
Sample size 18 4 15 25 5 4 19 8 2 5 2 12 6 3
Maximum SVL 42.3 48.1 44.9 40.9 43.5 37.8 41.8 41.3 42.0 49.6 36.2 39.7 39.0 44.7
Supralabial scales 8 or 9 8 or 9 10 8–10 7–10 8 or 9 9 8 or 9 10 8 10 or 11 8 or 9 10 or 11 8 or 9
Infralabial scales 8 or 9 7 or 8 9 8 6–9 7 or 8 9 7 or 8 10 7 or 8 10 6–8 9–11 7–9
No. of pore-bearing precloacal scales 5–8 1 6–8 6–8 5–8 6 or 7 4–7 3–6 4 0 6 or 7 0 0 4
Pore-bearing precloacal scales row continuous (1) or separated (0) 0 0 0 1 1 0 0 1 1 0
Pore-bearing precloacal scales elongate (1) or round (0) shapes 0 0 0 0 0 1 0 0 0 1 0
No. of paravertebral tubercles 25–27 24 or 25 23–25 22–25 18–24 19–24 19–21 22–29 22 24–27 16–18 19–25 15–19 25–29
Paravertebral tubercles linearly arranged (1) or more random (0) 0 0 0 0 w or 0 w 1 w or 0 1 w 0 0 1 0
Tubercles present (1) or absent (0) on lower flanks 1 1 0 1 1 1 1 w or 1 0 1 0 1 1 1
No. of 4th toe lamellae 22–25 23 or 24 26–28 26–29 21–31 24–28 27–29 25–28 29 29–31 22 24–26 24 24–28
Ventral scales keeled (1) or smooth (0) 1 1 1 1 0 w or 0 1 1 1 0 0 1 1 1
Subcaudal scales keeled (1) or smooth (0) 1 1 1 1 0 1 1 1 1 0 0 1 1 1
Single median row of keeled subcaudals (1) or smooth (0) scales 1 1 1 0 0 w 1 0 1 0 0 1 w
Enlarged median subcaudal scales row (1) or not (0) 1 0 0 1 0 w 0 0 0 1 0 1 0 1
Caudal tubercles restricted to a single paravertebral row on each side (1) or not (0) 0 0 0 0 0 0 1 0 1 0 0 1 0
Ventrolateral caudal tubercles anteriorly present (1) or not (0) 1 1 1 0 0 0 1 0 1 1 0 0 1 0
No. of postcloacal tubercles in males 1 or 2 2 1 1 1 or 2 1 or 2 1 1 2 1–3 2 1 or 2 0 1–3
Subtibial scales keeled (1) or smooth (0) 1 1 1 1 0 0 or 1 1 1 1 1 0 1 1 1
Yellow coloration in the subcaudal region present (1) or not (0) 1 0 0 1 1 0 1 1 1 0 0 0 0 0
Ventral pattern sexually dimorphic present (1) or not (0) 1 1 1 1 1 0 1 1 1 1 1 1 1

Cnemaspis samui sp. nov. is distinguished from C. adangrawi Ampai et al. 2019 by having maximum SVL of 42.3 mm (vs. 44.9 mm); eight or nine supralabial scales (vs. 10 scales); tubercles on lower flanks present (vs. absent); 22–25 lamellae under 4th toe (vs. 26–28 lamellae); enlarged median row of subcaudal scales present (vs. absent); and yellow coloration in the subcaudal region present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. chanardi Grismer et al. 2010 by having maximum SVL 42.3 mm (vs. 40.9 mm); 22–25 lamellae under 4th toe (vs. 26–29 lamellae); single median row of subcaudals keeled (vs. smooth); and ventrolateral caudal tubercles anteriorly present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. huaseesom Grismer et al. 2010 by having maximum SVL of 42.3 mm (vs. 43.5 mm); pore-bearing precloacal scales row separated (vs. continuous); 25–27 paravertebral tubercles (vs. 18–24 tubercles); ventral and subcaudal scales keeled (vs. smooth); single median row of subcaudals keeled (vs. smooth); enlarged median row of subcaudal scales present (vs. absent); ventrolateral caudal tubercles anteriorly present (vs. absent); and subtibial scales keeled (vs. smooth).

Cnemaspis samui sp. nov. is distinguished from C. kamolnorranathi Grismer et al. 2010 by having maximum SVL 42.3 mm (vs. 37.8 mm); pore-bearing precloacal scales row separated (vs. continuous); pore-bearing precloacal scales rounded (vs. elongated); 25–27 paravertebral tubercles (vs. 19–24 tubercles); enlarged median subcaudal scale row present (vs. absent); ventrolateral caudal tubercles anteriorly present (vs. absent); yellow coloration in the subcaudal region present (vs. absent); and ventral pattern sexually dimorphism present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. lineatubercularis Ampai et al. 2020 by having maximum SVL 42.3 mm (vs. 41.8 mm); 25–27 paravertebral tubercles (vs. 19–21 tubercles); paravertebral tubercles randomly arranged (vs. linearly arranged); 22–25 lamellae under 4th toe (vs. 27–29 lamellae); enlarged median row of subcaudal scales present (vs. absent); and caudal tubercles restricted to a single paravertebral row on each side absent (vs. present).

Cnemaspis samui sp. nov. is distinguished from C. omari Grismer et al. 2014 by having maximum SVL 42.3 mm (vs. 41.3 mm); single median row of subcaudals keeled (vs. smooth); enlarged median row of subcaudal scales present (vs. absent); and ventrolateral caudal tubercles anteriorly present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. phangngaensis Wood et al. 2017 by having eight or nine supralabial scales (vs. 10 scales); eight or nine infralabial scales (vs. 10 scales); 5–8 pore-bearing precloacal scales in males (vs. four scales); pore-bearing precloacal scales row separated (vs. continuous); 25–27 paravertebral tubercles (vs. 22 tubercles); paravertebral tubercles randomly arranged (vs. linearly arranged); tubercles on lower flanks present (vs. absent); 22–25 lamellae under 4th toe (vs. 29 lamellae); enlarged median row of subcaudal scales present (vs. absent); and caudal tubercles restricted to a single paravertebral row on each side absent (vs. present).

Cnemaspis samui sp. nov. is distinguished from C. punctatonuchalis Grismer et al. 2010 by having maximum SVL of 42.3 mm (vs. 49.6 mm); pore-bearing precloacal scales present (vs. absent); 22–25 lamellae under 4th toe (vs. 29–31 lamellae); ventral and subcaudal scales keeled (vs. smooth); single median row of subcaudals keeled (vs. smooth); and yellow coloration in the subcaudal region present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. selenolagus Grismer et al. 2020 by having maximum SVL 42.3 mm (vs. 36.2 mm); eight or nine supralabial scales (vs. 10 or 11 scales); eight or nine infralabial scales (vs. 10 scales); pore-bearing precloacal scales row separated (vs. continuous); pore-bearing precloacal scales shape rounded (vs. elongated); 25–27 paravertebral tubercles (vs. 16–18 tubercles); tubercles on lower flanks present (vs. absent); enlarged median row of subcaudal scales present (vs. absent); ventrolateral caudal tubercles anteriorly present (vs. absent); subtibial scales keeled (vs. smooth); and yellow coloration in the subcaudal region present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. siamensis (Smith, 1925) by having maximum SVL 42.3 mm (vs. 39.7 mm); pore-bearing precloacal scales present (vs. absent); single median row of subcaudals keeled (vs. smooth); ventrolateral caudal tubercles anteriorly present (vs. absent); and yellow coloration in the subcaudal region present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. thachanaensis Wood et al. 2017 by having maximum SVL 42.3 mm (vs. 39.0 mm); eight or nine supralabial scales (vs. 10 or 11 scales); pore-bearing precloacal scales present (vs. absent); 25–27 paravertebral tubercles (vs. 15–19 tubercles); paravertebral tubercles randomly arranged (vs. linearly arranged); enlarged median row of subcaudal scales present (vs. absent); caudal tubercles restricted to a single paravertebral row on each side absent (vs. present); one or two postcloacal tubercles in males (vs. absent); and yellow coloration in the subcaudal region present (vs. absent).

Cnemaspis samui sp. nov. is distinguished from C. vandeventeri Grismer et al. 2010 by having maximum SVL of 42.3 mm (vs. 44.7 mm); 5–8 pore-bearing precloacal scales (vs. four scales); ventrolateral caudal tubercles anteriorly present (vs. absent); and having yellow coloration in the subcaudal region present (vs. absent).

Cnemaspis similan sp. nov.

Figs 8, 9, 10, 11 Ko Similan Rock Gecko Thai common name: Jing Jok Niew Yaow Ko Similan (จิ้งจกนิ้วยาวเกาะสิมิลัน)

Holotype

(Fig. 8). ZMKU R 00984, adult male from Thailand, Phang-nga Province, Thai Mueang District, Lam Kaen Subdistrict, Mu Ko Similan National Park, Ko Similan, Ao Nguang Chang Bay (8°64.840'N, 97°64.834'E; 13 m a.s.l.), collected on 5 March 2018 by Natee Ampai, Attapol Rujirawan, Siriporn Yodthong and Piyawan Puanprapai.

Figure 8. 

Adult male holotype of Cnemaspis similan sp. nov. (ZMKU R 00984) from Ao Nguang Chang Bay, Ko Similan, Mu Ko Similan National Park, Lam Kaen Subdistrict, Thai Mueang District, Phang-nga Province, Thailand, in life A dorsolateral view B dorsal view C lateral view D ventral view E precloacal region showing distribution of pore-bearing scale (black arrow). Scale bars in dorsal, lateral, and ventral views: 10 mm.

Paratypes

(Fig. 9). Three adult females paratypes. ZMKU R 00985–00986 (two adult females), same data as holotype. ZMKU R 00987 (one adult female), same data as holotype except collected on 6 March 2018 by Natee Ampai, Attapol Rujirawan, Siriporn Yodthong and Piyawan Puanprapai.

Figure 9. 

Coloration of adult Cnemaspis similan sp. nov. in dorsolateral view A adult male holotype ZMKU R 00986 B adult female paratype ZMKU R 00985 C adult female paratype ZMKU R 00986 D adult female paratype ZMKU R 00987.

Diagnosis

Cnemaspis similan sp. nov. can be distinguished from all other members of the C. siamensis group by having the following combination of characters: (1) SVL of 47.6 mm in adult male and 38.6–48.1 mm (mean 43.6 ± 4.8 mm, N = 3) in adult females; (2) eight or nine supralabial and seven or eight infralabial scales; (3) ventral scales keeled (4) one pore-bearing precloacal scale, pore rounded in male; (5) 24 or 25 paravertebral tubercles, arranged randomly; (6) five small, elongated, spine-like tubercles on lower flanks; (7) 23 or 24 subdigital lamellae under the 4th toe; (8) no enlarged median subcaudal scale row; (9) ventrolateral caudal tubercles anteriorly present; (10) two postcloacal tubercles on lateral surface of hemipenial swellings at tail base in male; (11) sexual dimorphism in dorsal and ventral patterns; and (12) pale yellow reticulum on head, neck, flanks, belly and limbs only in male.

Description of holotype

An adult male in good state of preservation; 47.6 mm SVL; head moderate in size (HL/SVL 0.26), narrow (HW/SVL 0.16), flattened (HD/HL 0.39) and head distinct from neck; snout moderate (ES/HL 0.43), in lateral profile concave; loreal region marginally inflated, canthus rostralis nearly absent; postnasal region concave medially; scales of rostrum smooth, raised, larger than conical scales on occiput; weak and faint supraorbital ridges; gular scales granular, keeled, rounded, juxtaposed; throat scales granular, keeled, flat, subimbricate; shallow frontonasal sulcus; eye large (ED/HL 0.19); pupil round; extra-brillar fringe scales small in general but slightly larger anteriorly; scales on interorbitals and supercilium keeled; eye to ear distance greater than eyes diameter (EE/ED 1.50); ear opening elongate, much taller than wide (EL/HL 0.08); rostral concave dorsally; rostral bordered posteriorly by supranasals and laterally by first supralabials; 8R,L supralabials decreasing in size posteriorly; 7R,L infralabials decreasing in size posteriorly; nostril small, elliptical, oriented dorsoposteriorly, bordered posteriorly by small postnasal scales; mental scales large, triangular, flat, extending to level of second infralabial scales, bordered posteriorly by three large postmental scales.

Body robust, not elongate (AG/SVL 0.41); small, raised, keeled, dorsal scales equal in size throughout body intermixed with numerous large, keeled, multicarinate tubercles; 24 paravertebral tubercles randomly arranged; five small, elongated, spine-like tubercles on flanks; tubercles present on lower flanks; tubercles extend from occiput to tail; pectoral and abdominal scales keeled, round, flat, imbricate; abdominal scales larger than pectoral and dorsal scales; ventral scales of brachia smooth, raised and juxtaposed; one pore-bearing precloacal scale, with rounded pore; precloacal depression absent; femoral pores absent.

Fore and hind limbs moderately long, slender; scales beneath forearm slightly raised, smooth and subimbricate; subtibial scales keeled; palmar scales keeled, flat and subimbricate; digits long, slender with inflected joint; claws slightly recurved; subdigital lamellae unnotched; lamellae beneath first phalanges wide; lamellae beneath phalanx immediately following inflection granular; lamellae of distal phalanges wide; lamellae beneath inflection large; interdigital webbing generally absent; enlarged submetatarsal scales on 1st toe present; total subdigital lamellae on fingers I–V: 15-21-22-24-23 (right manus), 15-21-23-24-23 (left manus); fingers increase in length from first to fourth with fifth nearly equal in length as fourth; relative length of fingers IV>V>III>II>I; total subdigital lamellae on toes I–V: 17-20-22-24-23 (right pes), 17-19-22-24-23 (left pes); toes increase in length from first to fourth with fifth nearly equal in length as fourth; relative length of toes IV>V>III>II>I.

Tail regenerated, subcylindrical, relatively swollen at the base; tail length (TL) 49.6 mm; tail length longer than head and body (TL/SVL 1.04); dorsal and ventral scales at the tail base similar in size on mid-body dorsum; subcaudal scales keeled, juxtaposed, larger than dorsal scale of the tail size; shallow, middorsal furrow; lateral caudal furrow present; enlarged, transverse caudal tubercles arranged in segmented whorls, encircling tail; enlarged median subcaudal scale row absent; caudal tubercles present between upper and lower of lateral furrow; rest of the tail regenerated, slightly keeled, imbricate scales with no enlarged tubercles; scales on ventral aspect of the regenerated tail marginally larger in size than mid-body ventrals; 2R,L enlarge postcloacal tubercle at lateral surface of hemipenial swellings at the tail base.

Measurements of holotype

(in mm; Table 7). SVL 47.6; TL (regenerated tail) 49.6; TW 4.6; FL 6.8; TBL 8.6; AG 19.6; HL 12.4; HW 7.8; HD 4.8; ED 2.4; EE 3.6; ES 5.3; EN 4.0; EL 1.0; IN 1.1; IO 3.1.

Table 7.

Descriptive measurements in millimeters and characters of the type series of Cnemaspis similan sp. nov. H = holotype; P = paratype; – = data unavailable or absent; C = complete; R = regenerated. Measurement abbreviations are defined in the text.

Characters / Museum number ZMKU R 00984 ZMKU R 00985 ZMKU R 00986 ZMKU R 00987
Sex Male Female Female Female
Type series H P P P
SVL 47.6 48.1 38.6 44.2
Tail R R R C
TL 49.6 43.2 37.6 58.2
TW 4.6 4.6 4.1 4.4
FL 6.8 6.9 6.2 6.6
TBL 8.6 8.8 7.5 8.4
AG 19.6 19.8 16.6 19.4
HL 12.4 12.6 10.4 12.1
HW 7.8 7.9 6.5 7.7
HD 4.8 4.9 4.1 4.6
ED 2.4 2.4 2.1 2.3
EE 3.6 3.7 3.0 3.4
ES 5.3 5.4 4.3 4.9
EN 4.0 4.1 3.4 3.7
EL 1.0 1.0 0.9 1.0
IO 3.1 3.2 2.6 2.6
IN 1.1 1.1 0.9 1.0
Supralabial scales 8 9 9 9
Infralabial scales 7 8 8 8
No. of precloacal pores 1
Precloacal pore continuous (1) or separated (0)
Precloacal pores elongate (1) or round (0) 0
No. of paravertebral tubercles 24 25 25 24
Tubercles linearly arranged (1) or more random (0) 0 0 0 0
Tubercles present (1) or absent (0) on lower flanks 1 1 1 1
No. of 4th toe lamellae 24 24 23 23
Lateral caudal furrows present (1) or absent (0) 1 1 1 1
Pectoral scales keeled (1) or smooth (0) 1 1 1 1
Ventral scales on thigh keeled (1) or smooth (0) 1 1 1 1
Subcaudal keeled (1) or smooth (0) 1 1 1 1
Subtibial scales keeled (1) or smooth (0) 1 1 1 1
Enlarged median subcaudal scale row (1) or not (0) 0 0 0 0
Caudal tubercles restricted to the single paravertebral row on each side (1) or not (0) 1 1 1 1

Coloration in life

(Figs 8, 9). Dorsal ground color of head brown, top of head and snout bearing diffuse, mottled with smaller yellowish markings; 3R,L vertical, thin and fine dark stripes extending from postorbital to neck; 1R,L indistinct darker stripes runs from preorbital to supranasal; pupil black with orange streak; irregular, faint pale yellow reticulum on lateral surface of head, neck and flanks; 1R,L light-colored prescapular crescent on shoulder, located at forelimb insertion dorsoanteriorly; two dark streaks form a bipartite pattern on neck; dorsal ground color of body and tail brown with irregular black blotches except much paler brown on limbs; pale sage vertebral blotches run from the nape to tail; flanks with smaller dark and larger pale yellow streaks; enlarged conical spine-like yellowish tubercles on lower flanks; tubercles on the whole body pale sage and pale yellow; digits with distinct dark and pale bands; dorsum of limbs pale brown with dark blotches randomly arranged; ventral surfaces pale greyish intermixed with pale yellowish blotches on gular, neck, limbs and belly; no markings on gular and belly regions; original part of the tail brown with dark streaks form a bipartite pattern; regenerated part of the tail brown without bands; ventral side of tail pale greyish with no markings.

Coloration in preservative

(Figs 10, 11). Overall coloration of head, body, limbs, flanks and tail about the same as in life. Dorsal ground color of the whole-body became faded. The pale tones of limbs and tail darker than in life. Vertebral blotches run from the nape to tail became paler than in life. All pale yellowish coloration on head, limbs, flanks fade to creamy white. Ventral region of the whole-body homogenously tan colored.

Figure 10. 

Adult male holotype of Cnemaspis similan sp. nov. (ZMKU R 00984) from Ao Nguang Chang Bay, Ko Similan, Mu Ko Similan National Park, Lam Kaen Subdistrict, Thai Mueang District, Phang-nga Province, Thailand, in preservative A dorsal view B ventral view C dorsal view of trunk. Scale bar in dorsal and ventral views: 10 mm.

Figure 11. 

Cnemaspis similan sp. nov. in preservative A dorsal view (top panel) B ventral view (bottom panel); from left to right: ZMKU R 00984–00987. Scale bar in dorsal and ventral views: 10 mm.

Variation and additional information

Due to having only a single adult male (N = 1), variation in adult males is currently unknown. Most paratypes approximate the holotype in general features of body pattern and coloration. Adult females lack pore-bearing precloacal scale. Pale yellowish markings in head, neck, limbs, flanks and caudal regions were also absent in adult females. Three adult females have paler dorsal markings than the holotype. ZMKU R 00985 and ZMKU R 00986 have regenerated tails of uniform tan colored. ZMKU R 00985 has a large calcium sac on each side of the neck. ZMKU R 00985 has also broken left 4th pes.

Distribution

Cnemaspis similan sp. nov. is known only from the type locality at Ao Nguang Chang Bay (8°64.840'N, 97°64.834'E; 13 m a.s.l.; Fig. 12), Ko Similan, Lam Kaen Subdistrict, Thai Mueang District, Phang-nga Province, Thailand, approximately 65 km off the mainland of Thai Mueang District, Phang-nga Province in the Andaman Sea.

Figure 12. 

Habitats of Cnemaspis similan sp. nov. at the type locality A mixed evergreen forest with shrub and beach forests B microhabitat of holotype on tree near granitic rock boulder C microhabitat of paratypes in granitic rock boulder D microhabitat of paratypes in rock wall with vegetations (tree trunk, root or vine) of Ao Nguang Chang Bay, Ko Similan, Mu Ko Similan National Park, Lam Kaen Subdistrict, Thai Mueang District, Phang-nga Province, Thailand.

Natural history

The type locality is dominated by mixed evergreen forest with shrub and beach forests. Ao Nguang Chang Bay is located at the southern part of the largest island, Ko Similan (= Ko Pad). All specimens of C. similan sp. nov. were found in granitic rocky outcrops near Ao Nguang Chang Bay during the day (1542 h) and night (2023–2049 h) with an air temperature of 28.4 °C and relative humidity of 86%. Granitic boulder surfaces appeared to be relatively dry and cool. The male holotype was found during the night (2023 h) on a tree near a boulder. Most paratypes (ZMKU R 00985–00986) were found during the day time on vegetation (tree trunks, roots, or vines) except ZMKU R 00987, which was perched on a rock wall. Cnemaspis similan sp. nov. seems to be a diurnal rock-dwelling species. During the day, geckos were generally active, quite wary and quickly retreated when approached or disturbed. At night, geckos were found inactive or sleeping on vegetation near crevices or cracks of rock boulder as high as 2 m above the ground. They were often found clinging upside down to the underside of rock boulder overhang. During field surveys, the larger, nocturnal gekkonid Cyrtodactylus oldhami (Theobald, 1876) was found in sympatry on the ground and vegetation near boulders.

Etymology

The specific epithet similan is a noun in apposition and refers to the type locality of Ko Similan.

Comparisons

Cnemaspis similan sp. nov. can be distinguished from 13 congeners of the siamensis group (C. adangrawi, C. chanardi, C. huaseesom, C. kamolnorranathi, C. lineatubercularis, C. omari, C. phangngaensis, C. punctatonuchalis, C. samui sp. nov., C. selenolagus, C. siamensis, C. thachanaensis, and C. vandeventeri) by having a unique combination of morphological characters (Table 6) and uncorrected pairwise sequence divergences in mtDNA (ND2) of 8.16–27.11% (Table 2).

Cnemaspis similan sp. nov. is distinguished from C. adangrawi Ampai et al. 2019 by having maximum SVL 48.1 mm (vs. 44.9 mm); seven or eight infralabial scales (vs. nine scales); one pore-bearing precloacal scale (vs. 6–8 scales); eight or nine supralabial scales (vs. 10 scales); tubercles on lower flanks present (vs. absent); 23 or 24 lamellae under 4th toe (vs. 26–28 lamellae); and two postcloacal tubercles in males (vs. one tubercle).

Cnemaspis similan sp. nov. is distinguished from C. chanardi Grismer et al. 2010 by having maximum SVL 48.1 mm (vs. 40.9 mm); one pore-bearing precloacal scale (vs. 6–8 scales); 23 or 24 lamellae under 4th toe (vs. 26–29 lamellae); single median row of subcaudal keeled (vs. smooth); enlarged median subcaudal scales row absent (vs. present); ventrolateral caudal tubercles anteriorly present (vs. absent); two postcloacal tubercles in males (vs. one tubercle); and yellow coloration in the subcaudal region absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. huaseesom Grismer et al. 2010 by having maximum SVL 48.1 mm (vs. 43.5 mm); one pore-bearing precloacal scale (vs. 5–8 scales); ventral and subcaudal scales keeled (vs. smooth); single median row of subcaudal keeled (vs. smooth); ventrolateral caudal tubercles anteriorly present (vs. absent); subtibial scales keeled (vs. smooth); yellow coloration in the subcaudal region absent (vs. present); and yellow coloration in the subcaudal region absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. kamolnorranathi Grismer et al. 2010 by having maximum SVL 48.1 mm (vs. 37.8 mm); one pore-bearing precloacal scale (vs. six or seven scales); pore-bearing precloacal scale row absent (vs. continuous); pore-bearing precloacal scale rounded (vs. elongated); ventrolateral caudal tubercles anteriorly present (vs. absent); and ventral pattern sexually dimorphic present (vs. absent).

Cnemaspis similan sp. nov. is distinguished from C. lineatubercularis Ampai et al. 2020 by having maximum SVL 48.1 mm (vs. 41.8 mm); seven or eight infralabial scales (vs. nine scales); one pore-bearing precloacal scale (vs. 4–7 scales); 24 or 25 paravertebral tubercles (vs. 19–21 tubercles); paravertebral tubercles randomly arranged (vs. linearly arranged); 23 or 24 lamellae under 4th toe (vs. 27–29 lamellae); caudal tubercles restricted to a single paravertebral row on each side absent (vs. present); two postcloacal tubercles in males (vs. one tubercle); and yellow coloration in the subcaudal region absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. omari Grismer et al. 2014 by having maximum SVL 48.1 mm (vs. 41.3 mm); one pore-bearing precloacal scale (vs. 3–6 scales); 23 or 24 lamellae under 4th toe (vs. 25–28 lamellae); single median row of subcaudal keeled (vs. smooth); ventrolateral caudal tubercles anteriorly present (vs. absent); two postcloacal tubercles in males (vs. one tubercle); and yellow coloration in the subcaudal region absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. phangngaensis Wood et al. 2017 by having maximum SVL 48.1 mm (vs. 42.0 mm); eight or nine supralabial scales (vs. 10 scales); seven or eight infralabial scales (vs. 10 scales); one pore-bearing precloacal scale (vs. four scales); 24 or 25 paravertebral tubercles (vs. 22 tubercles); paravertebral tubercles randomly arranged (vs. linearly arranged); tubercles on lower flanks present (vs. absent); 23 or 24 lamellae under 4th toe (vs. 29 lamellae); caudal tubercles restricted to a single paravertebral row on each side absent (vs. present); and yellow coloration in the subcaudal region absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. punctatonuchalis Grismer et al. 2010 by having maximum SVL of 48.1 mm (vs. 49.6 mm); one pore-bearing precloacal scale (vs. absent); 23 or 24 lamellae under 4th toe (vs. 29–31 lamellae); ventral and subcaudal scales keeled (vs. smooth); single median row of subcaudal keeled (vs. smooth); and enlarged median subcaudal scales row absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. samui sp. nov. by having maximum SVL 48.1 mm (vs. 42.3 mm); one pore-bearing precloacal scale (vs. 5–8 scales); enlarged median subcaudal scales row absent (vs. present); and yellow coloration in the subcaudal region absent (vs. present).

Cnemaspis similan sp. nov. is distinguished from C. selenolagus Grismer et al. 2020 by having maximum SVL 48.1 mm (vs. 36.2 mm); eight or nine supralabial scales (vs. 10 or 11 scales); seven or eight infralabial scales (vs. 10 scales); one pore-bearing precloacal scale (vs. six or seven scales); pore-bearing precloacal scale shape rounded (vs. elongated); 24 or 25 paravertebral tubercles (vs. 16–18 tubercles); tubercles on lower flanks present (vs. absent); ventral and subcaudal scales keeled (vs. smooth); ventrolateral caudal tubercles anteriorly present (vs. absent); and subtibial scales keeled (vs. smooth).

Cnemaspis similan sp. nov. is distinguished from C. siamensis (Smith, 1925) by having maximum SVL 48.1 mm (vs. 39.7 mm); one pore-bearing precloacal scale (vs. absent); single median row of subcaudal keeled (vs. smooth); enlarged median subcaudal scales row absent (vs. present); and ventrolateral caudal tubercles anteriorly present (vs. absent).

Cnemaspis similan sp. nov. is distinguished from C. thachanaensis Wood et al. 2017 by having maximum SVL 48.1 mm (vs. 39.0 mm); eight or nine supralabial scales (vs. 10 or 11 scales); seven or eight infralabial scales (vs. 9–11 scales); pore-bearing precloacal scale present (vs. absent); 24 or 25 paravertebral tubercles (vs. 15–19 tubercles); paravertebral tubercles randomly arranged (vs. linearly arranged); caudal tubercles restricted to a single paravertebral row on each side absent (vs. present); and two postcloacal tubercles in males (vs. absent).

Cnemaspis similan sp. nov. is distinguished from C. vandeventeri Grismer et al. 2010 by having maximum SVL 48.1 mm (vs. 44.7 mm); one pore-bearing precloacal scale (vs. four scales); enlarged median subcaudal scales row absent (vs. present); and ventrolateral caudal tubercles anteriorly present (vs. absent).

Discussion

Historically, most Thai Cnemaspis were known from areas of limestone karsts and granitic rock formations on the mainland in western, eastern and southern Thailand (Smith 1925; Taylor 1963; Bauer and Das 1998; Grismer et al. 2010, 2020; Wood et al. 2017; Ampai et al. 2020). Only five species of Thai Cnemaspis have been found on offshore islands, including C. tarutaoensis Ampai et al. 2019 in the kumpoli group and four species in the siamensis group, C. adangrawi Ampai et al. 2019, C. chanardi Grismer et al. 2010, C. siamensis (Smith, 1925) and C. vandeventeri Grismer et al. 2010. The discoveries and descriptions of C. samui sp. nov. and C. similan sp. nov. increase the total number of Southeast Asian Cnemaspis to 66 species, of which 21 occur in Thailand. This also increases the number of insular species in Thailand from five to seven. Remarkably, the geographic distribution of C. chanardi is relatively large and discontinuous across limestone karsts and granitic formations in southern Thailand (Grismer et al. 2014). This study suggests that C. chanardi might actually represent a complex of species in southern Thailand. Additional data on all C. chanardi populations are needed to better delineate species boundaries and estimate their phylogenetic relationships within the siamensis group (Wood et al. in prep).

This study revealed two unrecognized species of Cnemaspis in granitic areas of southern Thailand, suggesting that additional sampling might reveal more species in this region. Additionally, the phylogenetic analyses of the siamensis group confirmed that C. chanardi and C. kamolnorranathi are strongly supported members of the siamensis group. Previously, Grismer et al. (2010) described C. chanardi and C. kamolnorranathi based only on a combination of morphometric and meristic characters. The phylogenetic placements shown here based on the mtDNA (ND2) of C. chanardi and C. kamolnorranathi verified the hypotheses of Grismer et al. (2010, 2014) based on morphological and color pattern characters. The phylogenetic position of C. chanardi is the sister species to a clade composed of C. phangngaensis and the new species C. similan sp. nov., while C. kamolnorranathi is the sister species to the other new species, C. samui sp. nov. The north-south division of the siamensis group shown here is concordant with previous studies (Grismer et al. 2014, 2020; Wood et al. 2017; Ampai et al. 2019, 2020; Lee et al. 2019) that revealed a northern clade of six species (C. huaseesom, C. punctatonuchalis, C. selenolagus, C. siamensis, C. thachanaensis,and C. vandeventeri) and a southern clade of nine species (C. adangrawi, C. chanardi, C. kamolnorranathi, C. lineatubercularis, C. omari, C. phangngaensis, C. roticanai, C. samui sp. nov., and C. similan sp. nov.). The diversification of the siamensis group could be linked to the timing of sea level fluctuations that exposed the dispersal corridors between mainland and offshore islands of the Sunda Shelf (Voris, 2000; Sathiamurthy and Voris 2006; Woodruff, 2010). Additional field surveys in unexplored and overlooked areas, particularly in both limestone karst and granitic formations, are needed to better evaluate species diversity and further understand the complex biogeography of Cnemaspis in Thailand and adjacent areas.

Acknowledgements

This work was financially supported by Srinakharinwirot University Research Grant (No. 596/2564) and the Thailand Research Fund (DBG6080010). AR and AA were supported by Kasetsart University Research and Development Institute (KURDI), Office of the Permanent Secretary, Ministry of Higher Education, Science, Research and Innovation (No. RGNS 64-038) and the Department of Zoology, Faculty of Science, Kasetsart University. Department of National Parks, Wildlife and Plant Conservation, Thailand provided permission to conduct the research (Permit no.0907.4/20800 and 0907.4/28401). This research was approved by the Institutional Animal Care and Use Committee of Faculty of Science, Kasetsart University (project no. ACKU61-SCI-008). We thank Ruamsilp Manajongprasert (Mu Ko Similan National Park) for facilitating the fieldwork. Piyawan Puanprapai and Akrachai Aksornneam assisted with fieldwork. Lee Grismer and an anonymous reviewer improved the manuscript.

References

  • Ampai N, Rujirawan A, Wood Jr PL, Stuart BL, Aowphol A (2019) Morphological and molecular analyses reveal two new species of Cnemaspis Strauch, 1887 (Squamata, Gekkonidae) from Satun Province, southern Thailand. ZooKeys 858: 127–161. https://doi.org/10.3897/zookeys.858.34297
  • Ampai N, Wood Jr PL, Stuart BL, Aowphol A (2020) Integrative taxonomy of the rock-dwelling gecko Cnemaspis siamensis complex (Squamata, Gekkonidae) reveals a new species from Nakhon Si Thammarat Province, southern Thailand. ZooKeys 932: 129–159. https://doi.org/10.3897/zookeys.932.50602
  • Bauer AM, Jackman TR, Greenbaum E, Giri VB, de Silva A (2010) South Asia supports a major endemic radiation of Hemidactylus geckos. Molecular Phylogenetics and Evolution 57(1): 343–352. https://doi.org/10.1016/j.ympev.2010.06.014
  • Chan KO, Grismer LL (2021) Integrating spatial, phylogenetic, and threat assessment data from frogs and lizards to identify areas for conservation priorities in Peninsular Malaysia. Global Ecology and Conservation 28: e01650. https://doi.org/10.1016/j.gecco.2021.e01650
  • Das I (2005) Revision of the genus Cnemaspis Strauch, 1887 (Sauria: Gekkonidae), from the Mentawai and Adjacent Archipelagos of Western Sumatra, Indonesia, with description of four new species. Journal of Herpetology 39(2): 233–247. https://doi.org/10.1670/61-02A
  • Gamble T, Greenbaum E, Jackman TR, Bauer AM (2015) Into the light: Diurnality has evolved multiple times in geckos. Biological Journal of the Linnean Society. Linnean Society of London 115(4): 896–910. https://doi.org/10.1111/bij.12536
  • Grismer LL, Sumontha M, Cota M, Grismer JL, Wood Jr PL, Pauwels OSG, Kunya K (2010) A revision and redescription of the rock gecko Cnemaspis siamensis (Taylor 1925) (Squamata: Gekkonidae) from Peninsular Thailand with descriptions of seven new species. Zootaxa 2576(1): 1–55. https://doi.org/10.11646/zootaxa.2576.1.1
  • Grismer LL, Wood Jr PL, Shahrul A, Awal R, Norhayati A, Muin M, Sumontha M, Grismer J, Chan K, Quah ESH, Pauwels OSG (2014) Systematics and natural history of Southeast Asian Rock Geckos (genus Cnemaspis Strauch, 1887) with descriptions of eight new species from Malaysia, Thailand, and Indonesia. Zootaxa 3880(1): 1–147. https://doi.org/10.11646/zootaxa.3880.1.1
  • Grismer LL, Wood Jr PL, Quah ES, Anuar S, Ngadi E, Norhayati A (2015a) A new insular species of Rock Gecko (Cnemaspis Boulenger) from Pulau Langkawi, Kedah, Peninsular Malaysia. Zootaxa 3985(2): 203–218. https://doi.org/10.11646/zootaxa.3985.2.2
  • Grismer LL, Wood Jr PL, Tri N, Murdoch ML (2015b) The systematics and independent evolution of cave ecomorphology in distantly related clades of Bent-toed Geckos (Genus Cyrtodactylus Gray, 1827) from the Mekong Delta and islands in the Gulf of Thailand. Zootaxa 3980(1): 106–126. https://doi.org/10.11646/zootaxa.3980.1.6
  • Grismer LL, Yushchenko PV, Pawangkhanant P, Nazarov RA, Naiduangchan M, Suwannapoom C, Poyarkov NA (2020) A new species of Cnemaspis Strauch (Squamata: Gekkonidae) of the C. siamensis group from Tenasserim Mountains, Thailand. Zootaxa 4852(5): 547–564. https://doi.org/10.11646/zootaxa.4852.5.3
  • Hammer Ø, Harper DAT, Ryan PD (2001) PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica 4: 1–9.
  • Jombart T, Devillard S, Balloux F (2010) Discriminant analysis of principal components: A new method for the analysis of genetically structured populations. BMC Genetics 11(1): e94. https://doi.org/10.1186/1471-2156-11-94
  • Kalyaanamoorthy S, Minh BQ, Wong TK, von Haeseler A, Jermiin LS (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14(6): 587–589. https://doi.org/10.1038/nmeth.4285
  • Karunarathna S, Bauer A, de Silva A, Surasinghe T, Somaratna L, Madawala M, Gabadage D, Botejue M, Henkanaththegedara S, Ukuwela KDB (2019) Description of a new species of the genus Cnemaspis Strauch, 1887 (Reptilia: Squamata: Gekkonidae) from the Nilgala Savannah forest, Uva Province of Sri Lanka. Zootaxa 4545(3): 389–407. https://doi.org/10.11646/zootaxa.4545.3.4
  • Kurita T, Nishikawa K, Matsui M, Hikida T (2017) A new species of Rock Gecko genus Cnemaspis (Squamata: Gekkonidae) from Western Sarawak, Malaysia. Zootaxa 4258(5): 525–538. https://doi.org/10.11646/zootaxa.4258.6.2
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B (2016) PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34(3): 772–773. https://doi.org/10.1093/molbev/msw260
  • Lee JL, Miller AH, Zug GR, Mulcahy DG (2019) The discovery of Rock Geckos Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) in the Tanintharyi Region, Myanmar with the description of two new species. Zootaxa 4661(1): 040–064. https://doi.org/10.11646/zootaxa.4661.1.2
  • Linnaeus C (1758) Systema naturæ per regna tria naturæ, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Tomus I. Editio decima, reformata. Laurentii Salvii, Holmiæ, 824 pp. https://doi.org/10.5962/bhl.title.542
  • Lleonart J, Salat J, Torres GJ (2000) Removing allometric effects of body size in morphological analysis. Journal of Theoretical Biology 205(1): 85–93. https://doi.org/10.1006/jtbi.2000.2043
  • Macey JR, Larson A, Ananjeva NB, Papenfuss TJ (1997) Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. Journal of Molecular Evolution 44(6): 660–674. https://doi.org/10.1007/PL00006190
  • Malonza PK, Bauer AM (2022) Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya. Zootaxa 5141(2): 101–139. https://doi.org/10.11646/zootaxa.5141.2.1
  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA, 1–8. https://doi.org/10.1109/GCE.2010.5676129
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1): 268–274. https://doi.org/10.1093/molbev/msu300
  • Nguyen HN, Hung CM, Yang MY, Lin SM (2020) Sympatric competitors have driven the evolution of temporal activity patterns in Cnemaspis geckos in Southeast Asia. Scientific Reports 10(1): 1–8. https://doi.org/10.1038/s41598-019-56549-x
  • Pyron RA, Burbrink FT, Wiens JJ (2013) A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evolutionary Biology 13(1): 1–53. https://doi.org/10.1186/1471-2148-13-93
  • R Core Team (2018) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna. https://www.R-project.org
  • Riyanto A, Hamidy A, Sidik I, Gunalen D (2017) A new species of Rock Gecko of the genus Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from Belitung Island, Indonesia. Zootaxa 4358(3): 583–597. https://doi.org/10.11646/zootaxa.4358.3.12
  • Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic biology 61(3): 539–542. https://doi.org/10.1093/sysbio/sys029
  • Rösler HA, Bauer AM, Heinicke MP, Greenbaum E, Jackman TR, Nguyen TQ, Ziegler T (2011) Phylogeny, taxonomy, and zoogeography of the genus Gekko Laurenti, 1768 with the revalidation of G. reevesii Gray, 1831 (Sauria: Gekkonidae). Zootaxa 2989(1): 1–50. https://doi.org/10.11646/zootaxa.2989.1.1
  • Sathiamurthy E, Voris HK (2006) Maps of Holocene sea level transgression and submerged lakes on the Sunda Shelf. The Natural History Journal of Chulalongkorn University 2(Supplement): 1–43.
  • Simmons JE (2015) Herpetological Collecting and Collections Management, 3rd Edn. Society for the Study of Amphibians and Reptiles Herpetological Circular No. 42. Salt Lake City, UT, 191 pp.
  • Smith MA (1925) IV. Contributions to the herpetology of Borneo. The Sarawak Museum Journal 3(8): 15–34.
  • Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Phylogenetics and Evolution 38: 3022–3027. https://doi.org/10.1093/molbev/msab120
  • Taylor EH (1963) The lizards of Thailand. The University of Kansas Science Bulletin 44: 687–1077.
  • Thorpe RS (1975) Quantitative handling of characters useful in snake systematics with particular reference to interspecific variation in the Ringed Snake Natrix natrix (L.). Biological Journal of the Linnean Society. Linnean Society of London 7(1): 27–43. https://doi.org/10.1111/j.1095-8312.1975.tb00732.x
  • Thorpe RS (1983) A review of the numerical methods for recognized and analysing racial differentiation. In: Felsenstein J (Ed.) Numerical taxonomy. Berlin Heidelberg: Springer, 404–423. https://doi.org/10.1007/978-3-642-69024-2_43
  • Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ (2016) W-IQ-TREE: A fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1): W232–W235. https://doi.org/10.1093/nar/gkw256
  • Turan C (1999) A note on the examination of morphometric differentiation among fish populations: The truss system. Turkish Journal of Zoology 23: 259–263.
  • Wilcox TP, Zwickl DJ, Heath TA, Hillis DM (2002) Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution 25(2): 361–371. https://doi.org/10.1016/S1055-7903(02)00244-0
  • Wood Jr PL, Grismer LL, Aowphol A, Aguilar CA, Cota M, Grismer MS, Murdoch ML, Sites Jr JW (2017) Three new karst-dwelling Cnemaspis Strauch, 1887 (Squamata; Gekkonidae) from Peninsular Thailand and the phylogenetic placement of C. punctatonuchalis and C. vandeventeri. PeerJ 5: e2884. https://doi.org/10.7717/peerj.2884
  • Woodruff DS (2010) Biogeography and conservation in Southeast Asia: How 2.7 million years of repeated environmental fluctuations affect today’s patterns and the future of the remaining refugial-phase biodiversity. Biodiversity and Conservation 19(4): 919–941. https://doi.org/10.1007/s10531-010-9783-3
  • Ziegler T, Botov A, Nguyen TT, Bauer AM, Brennan IG, Ngo HT, Nguyen TQ (2016) First molecular verification of Dixonius vietnamensis Das, 2004 (Squamata: Gekkonidae) with the description of a new species from Vinh Cuu Nature Reserve, Dong Nai Province, Vietnam. Zootaxa 4136(3): 553–566. https://doi.org/10.11646/zootaxa.4136.3.7

Appendix I. List of comparative specimens examined

Cnemaspis adangrawi: Thailand, Satun Province, Mueang Satun District, Ko Adang: ZMKU R 00767 (male holotype), ZMKU R 00769–70, THNHM 28206–09 (6 males), ZMKU R 00768, ZMKU R 00771 (2 females); Thailand, Satun Province, Mueang Satun District, Ko Rawi: ZMKU R 00773, ZMKU R 00775, THNHM 28210 (3 adult males), ZMKU R 00774, THNHM 28211 (2 females).

Cnemaspis chanardi: Thailand, Trang Province, Nayong District, Ban Chong: THNHM 06983 (male holotype); Krabi Province, Klong Thom District: THNHM 012439–40 (males); Mueang Krabi District: THNHM 012436–37 (males), THNHM 012438 (female); Nakhon Si Thammarat Province, Tha Sala District: THNHM 020992 (male); Lansaka district: THNHM 014111 (immature male); Noppitam district: THNHM 013838 (male), THNHM 010705 (male); Surat Thani Province, Mu Ko Ang Thong, Mueang Surat Thani District: THNHM 016074 (female).

Cnemaspis huaseesom: Thailand, Kanchanaburi Province, Sai Yok District, Sai Yok National Park: THNHM 15909 (male holotype).

Cnemaspis lineatubercularis: Thailand, Nakhon Si Thammarat Province, Lan Saka District, Wang Mai Pak Waterfall: ZMKU R 00828 (male holotype); ZMKU R 00821–31 (males); THNHM 28694–95 (males); ZMKU R 00826 (female); THNHM 28696–97 (females); ZMKU R 00832–35 (females).

Cnemaspis niyomwanae: Thailand, Trang Province, Palean District, Thum Khao Ting: THNHM 15909 (female holotype).

Cnemaspis punctatonuchalis: Thailand, Prachuap Khiri Khan Province, Thap Sakae District, Huay Yang National Park: THNHM 02001 (male holotype).

Cnemaspis siamensis: Thailand, Nakhon Si Thammarat Province, Lan saka District: THNHM 013828 (male); Tha Sala District: THNHM 018265 (male); Chumpon Province, Mueang Chumpon District: THNHM 0372 (male); Phato District: THNHM 01086 (male); Surat Thani Province, Vibhawadee District: THNHM 01084 (female); Mu Ko Ang Thong, Mueang Surat Thani District: THNHM 015624 (female).

Cnemaspis vandeventeri: Thailand, Ranong Province, Kapur District, Klong Naka: THNHM 08261 (male holotype), THNHM 08260 (female).

Supplementary material

Supplementary material 1 

Table S1

Natee Ampai, Attapol Rujirawan, Siriporn Yodthong, Korkhwan Termprayoon, Bryan L. Stuart, Perry L. Wood Jr, Anchalee Aowphol

Data type: excel file

Explanation note: Significant p-values of the ANOVA analyses (Tukey’s HSD; p<0.05) from 15 size-corrected morphometric measurements of nine OTUs of Cnemaspis siamensis species group. HD, ED and EE were not significantly different from one another. Measurement abbreviations are defined in the material and methods.

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
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