Research Article |
Corresponding author: Pierre A. Mvogo Ndongo ( mpierrearmand@yahoo.fr ) Academic editor: Sameer Pati
© 2022 Pierre A. Mvogo Ndongo, Thomas von Rintelen, Paul F. Clark, Adnan Shahdadi, Carine Rosine Tchietchui, Neil Cumberlidge.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Mvogo Ndongo PA, von Rintelen T, Clark PF, Shahdadi A, Tchietchui CR, Cumberlidge N (2022) Phylogenetic relationships among the species of the Cameroonian endemic freshwater crab genus Louisea Cumberlidge, 1994 (Crustacea, Brachyura, Potamonautidae), with notes on intraspecific morphological variation within two threatened species. ZooKeys 1122: 125-143. https://doi.org/10.3897/zookeys.1122.85791
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Louisea Cumberlidge, 1994 (Crustacea, Brachyura, Potamonautidae) currently includes four endemic Cameroonian freshwater crab species whose phylogenetic relationships were previously unresolved. In the present study, phylogenetic analyses are carried out involving three mtDNA loci (COI, 12S rRNA, and 16S rRNA). The COI locus revealed divergence times of 5.6 million years ago (myr) for when L. balssi (Bott, 1959) diverged from L. edeaensis (Bott, 1969); 4.1 myr for when L. edeaensis diverged from L. yabassi Mvogo Ndongo, von Rintelen & Cumberlidge, 2019; and 2.48 myr for when the later species diverged from L. nkongsamba Mvogo Ndongo, von Rintelen & Cumberlidge, 2019. Three genetic lineages were found within L. nkongsamba that are supported by uncorrected p-distances and the haplotype network. Morphological variation in some taxonomically important characters was found within both L. nkongsamba and L. yabassi. No correlation, however, was found between the morphotypes within these species and the uncovered genetic lineages. Recognition of species boundaries and of subpopulations of species will prove valuable when making informed conservation decisions as part of the development of species action plans for these rare and threatened freshwater crabs.
Decapoda, morphotypes, Nkongsamba, Potamoidea, species boundaries, Yabassi
Louisea Cumberlidge, 1994 (Crustacea, Brachyura, Potamonautidae) is endemic to remote Cameroonian forested ecosystems and currently includes four freshwater crab species: L. balssi (Bott, 1959), L. edeaensis (Bott, 1969), L. nkongsamba Mvogo Ndongo, von Rintelen & Cumberlidge, 2019, and L. yabassi Mvogo Ndongo, von Rintelen & Cumberlidge, 2019. Louisea balssi and L. edeaensis have been revised recently based on new material collected in Cameroon (
The aim of the present work is to evaluate the phylogenetic relationships within Louisea and to estimate the genetic distance between the species using molecular data. Intraspecific variation of some important taxonomic characters within two newly discovered species is also assessed in order to better identify species boundaries within Louisea. Accurate species delimitation is necessary for understanding levels of biodiversity, and for adopting effective conservation and sustainable management strategies (
Four Louisea species were collected from four different locations in southwestern Cameroon between 2015 and 2021 (Fig.
Descriptive morphometrics of L. edeaensis and L. balssi specimens are given in
Genomic DNA was extracted from a tissue sample of up to 25 mg cut from the pereiopod muscle of 70% ethanol-preserved specimens using the Qiagen DNeasy Blood & Tissue kit following the manufacturer’s instructions. Polymerase chain reaction (PCR) was used to amplify three mitochondrial gene fragments: a ~638 bp region of the 16S ribosomal RNA gene (16S rRNA) using primers 16L29 and 16HLeu (
Details of mtDNA markers used in the present study for Louisea species and outgroup species. Nl = Nlonako; Here = sequence available in the present study; * =
Species and sample number | Locality in Cameroon | Population number | Morphotypes (see Tables |
Museum/extraction number | GenBank accession number | ||
---|---|---|---|---|---|---|---|
COI | 12S rRNA | 16S rRNA | |||||
L. nkongsamba (1) | Nlonako, Engugue1382 | Population 1 | Nl Morphotype 1 |
|
OP122926 | OP133321 | OP133281 |
L. nkongsamba (2) | Nlonako, NgaltongueS1 | Population 1 | Nl Morphotype 1 |
|
OP122931 | OP133326 | OP133286 |
L. nkongsamba (3) | Nlonako, NgaltongueS1 | Population 1 | Nl Morphotype 1 |
|
OP122932 | OP133327 | OP133287 |
L. nkongsamba (4) | Nlonako, NgaltongueS1 | Population 1 | Nl Morphotype 1 |
|
OP122933 | OP133328 | OP133288 |
L. nkongsamba (5) | Nlonako, NgaltongueS1 | Population 1 | Nl Morphotype 1 |
|
OP122934 | OP133329 | OP133289 |
L. nkongsamba (6) | Nlonako Engugue1462 | Population 1 | Nl Morphotype 1 |
|
OP122936 | OP133331 | OP133291 |
L. nkongsamba (7) | Nlonako, NgaltongueS2 | Population 1 | Nl Morphotype 1 |
|
OP122941 | OP133336 | OP133296 |
L. nkongsamba (8) | Nlonako, NgaltongueS2 | Population 1 | Nl Morphotype 1 |
|
OP122942 | OP133337 | OP133297 |
L. nkongsamba (9) | Nlonako, NgaltongueS2 | Population 1 | Nl Morphotype 1 |
|
OP122943 | OP133338 | OP133298 |
L. nkongsamba (10) | Nlonako, NgaltongueS2 | Population 1 | Nl Morphotype 1 |
|
OP122944 | OP133339 | OP133299 |
L. nkongsamba (11) | Nlonako, Eyimba | Population 1 | Nl Morphotype 1 |
|
OP122946 | OP133341 | OP133301 |
L. nkongsamba (12) | Nlonako, Nguengue | Population 1 | Nl Morphotype 1 |
|
OP122951 | OP133346 | OP133306 |
L. nkongsamba (13) | Nlonako, Nguengue | Population 1 | Nl Morphotype 1 |
|
OP122952 | OP133347 | OP133307 |
L. nkongsamba (14) | Nlonako, Nguengue | Population 1 | Nl Morphotype 1 |
|
OP122953 | OP133348 | OP133308 |
L. nkongsamba (15) | Nlonako, Engugue1382 | Population 2 | Nl Morphotype 1 |
|
OP122927 | OP133322 | OP133282 |
L. nkongsamba (16) | Nlonako, Engugue1382 | Population 2 | Nl Morphotype 1 |
|
OP122928 | OP133323 | OP133283 |
L. nkongsamba (17) | Nlonako, Engugue1382 | Population 2 | Nl Morphotype 1 |
|
OP122929 | OP133324 | OP133284 |
L. nkongsamba (18) | Nlonako, NgaltongueS1 | Population 2 | Nl Morphotype 1 |
|
OP122935 | OP133330 | OP133290 |
L. nkongsamba (19) | Nlonako Engugue1462 | Population 2 | Nl Morphotype 2 |
|
OP122937 | OP133332 | OP133292 |
L. nkongsamba (20) | Nlonako Engugue1462 | Population 2 | Nl Morphotype 2 |
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OP122938 | OP133333 | OP133293 |
L. nkongsamba (21) | Nlonako Engugue1462 | Population 2 | Nl Morphotype 2 |
|
OP122939 | OP133334 | OP133294 |
L. nkongsamba (22) | Nlonako, Eyimba | Population 2 | Nl Morphotype 1 |
|
OP122947 | OP133342 | OP133302 |
L. nkongsamba (23) | Nlonako, Eyimba | Population 2 | Nl Morphotype 1 |
|
OP122948 | OP133343 | OP133303 |
L. nkongsamba (24) | Nlonako, Eyimba | Population 2 | Nl Morphotype 1 |
|
OP122949 | OP133344 | OP133304 |
L. nkongsamba (25) | Nlonako, Nguengue | Population 2 | Nl Morphotype 1 |
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OP122954 | OP133349 | OP133309 |
L. nkongsamba (26) | Nlonako, Nguengue | Population 2 | Nl Morphotype 1 |
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OP122955 | OP133350 | OP133310 |
L. nkongsamba (27) | Nlonako, Engugue1382 | Population 3 | Nl Morphotype 1 |
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OP122930 | OP133325 | OP133285 |
L. nkongsamba (28) | Nlonako Engugue1462 | Population 3 | Nl Morphotype 1 |
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OP122940 | OP133335 | OP133295 |
L. nkongsamba (29) | Nlonako, NgaltongueS2 | Population 3 | Nl Morphotype 1 |
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OP122945 | OP133340 | OP133300 |
L. nkongsamba (30) | Nlonako, Eyimba | Population 3 | Nl Morphotype 1 |
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OP122950 | OP133345 | OP133305 |
L. yabassi (31) | Eboforest Stream no. 1 | Population 1 | Ebo Morphotype 1 |
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OP122956 | OP133351 | OP133311 |
L. yabassi (32) | Eboforest Stream no. 1 | Population 1 | Ebo Morphotype 1 |
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OP122957 | OP133352 | OP133312 |
L. yabassi (33) | Eboforest Stream no. 1 | Population 1 | Ebo Morphotype 1 |
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OP122958 | OP133353 | OP133313 |
L. yabassi (34) | Eboforest Stream no. 1 | Population 1 | Ebo Morphotype 1 |
|
OP122959 | OP133354 | OP133314 |
L. yabassi (35) | Eboforest Stream no. 1 | Population 1 | Ebo Morphotype 1 |
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OP122960 | OP133355 | OP133315 |
L. yabassi (36) | Eboforest Stream no. 2 | Population 2 | Ebo Morphotype 2 |
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OP122961 | OP133356 | OP133316 |
L. yabassi (37) | Eboforest Stream no. 2 | Population 2 | Ebo Morphotype 2 |
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OP122962 | OP133357 | OP133317 |
L. yabassi (38) | Eboforest Stream no. 2 | Population 2 | Ebo Morphotype 2 |
|
OP122963 | OP133358 | OP133318 |
L. yabassi (39) | Eboforest Stream no. 2 | Population 2 | Ebo Morphotype 2 |
|
OP122964 | OP133359 | OP133319 |
L. yabassi (40) | Eboforest Stream no. 2 | Population 2 | Ebo Morphotype 2 |
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OP122965 | OP133360 | OP133320 |
L. edeaensis | Lake Ossa, Bedimet Island | Population 1 | — |
|
MN188068.1* | — | MN217395* |
L. edeaensis | Lake Ossa, Bedimet Island | Population 1 | — | T351-30 | KY964474.1** | KY964479** | KY964472** |
L. edeaensis | Lake Ossa, Bedimet Island | Population 1 | — | ZMB_Crust 26930 | KY964473.1** | KY964478** | — |
L. balssi | Manengouba, stream | Population 1 | — |
|
MN188071.1* | MN217385* | MN217392* |
L. balssi | Manengouba, stream | Population 1 | — |
|
MN188070.1* | MN217384* | MN217391* |
Potamonemus man | Bakossi National Park | Population 1 | — |
|
MN188067.1* | MN217390* | MN217398* |
Buea mundemba | Korup National Park | Population 1 | — |
|
MN188069.1* | MN217388* | MN217396* |
The COI mitochondrial gene employed here is relatively variable and is commonly used for population genetics, and more recently also for faunal species identification using the barcoding approach (
Maximum parsimony genotype networks (
The mitochondrial genes (COI, 12S rRNA, 16S rRNA) were used to identify the species boundaries, to examine the evolutionary origins and the relationships within Louisea species, and to determine whether morphological and ecological similarities between species are based on convergence or common ancestry. Here two methods of phylogenetic inference were applied to the data set: maximum likelihood (ML) using the software PAUP*, and Bayesian inference (BI) as implemented in MrBayes (v. 3.3;
A total of 138 DNA sequences were obtained, 46 sequences each of COI, 16S rRNA, and 12S rRNA (Table
To estimate clade divergence times based on the COI gene, a Bayesian analysis with the software BEAST v. 2.6.2 (
a.s.l. above sea level;
CW carapace width measured at widest point;
CL carapace length measured along medial line from anterior to posterior margin;
CH carapace height measured at maximum height of cephalothorax;
FW front width measured along anterior frontal margin between inner angles of orbits;
myr million years ago;
PAMN Pierre A. Mvogo Ndongo;
S2/3 male sternal sulcus between thoracic sternites 2 and 3;
S3/4 male sternal sulcus between thoracic sternites 3 and 4.
Morphometric measurements of L. yabassi and L. nkongsamba populations are provided in Table
Morphometric and collection data of specimens of Louisea yabassi from Ebo Forest, Cameroon, and L. nkongsamba from Nlonako Ecological Reserve, Cameroon. Ad: adult; Sa: subadult, M: male; F: female.
Species | CW/FW mean (n) | CL/FW mean (n) | CH/FW mean (n) | Size range (CW in mm) | Museum number | Locality | Geographic coordinates | Altitude (m a.s.l.) |
---|---|---|---|---|---|---|---|---|
L. yabassi | 2.9 (19) | 2.1 (19) | 1.3 (19) | Ad M 16.4–20.2 | LaboPasmat X100 | Ebo Forest, Stream NO. 1 | 04°25'01.7"N, 010°12'00.8"E | 162 |
L. yabassi | Ad F 12.0–24.1 |
|
Ebo Forest, Stream NO. 1 | 04°25'01.7"N, 10°12'00.8"E | 162 | |||
L. yabassi | 2.9 (16) | 2.1 (16) | 1.3 (16) | Ad M 16.6–21.3 | LaboPasmat X101 | Ebo Forest, Stream NO. 2 | 04°24'59.3"N, 010°12'07.7"E | 254 |
L. yabassi | Ad F 17.4–22.5 |
|
Ebo Forest, Stream NO. 2 | 04°24'59.3"N, 010°12'07.7"E | 254 | |||
L. nkongsamba | 2.9 (8) | 2.1 (8) | 1.3 (8) | Ad M 15.8–20.0 | LaboPasmat X102 | Nlonako, Nguengue | 04°54'44.8"N, 009°58'50.0"E | 1176 |
L. nkongsamba | 2.9 (5) | 2.1 (5) | 1.3 (5) | Ad M 12.8–18.5 | LaboPasmat X102Y | Nlonako, NgaltongueS2 | 04°55'20.4"N, 009°57'31.0"E | 1180 |
L. nkongsamba | 2.9 (12) | 2.1 (12) | 1.3 (12) | Ad M 13.8–17.4 | LaboPasmat X103 | Nlonako, NgaltongueS1 | 04°55'20.4"N, 009°57'42.6"E | 1180 |
L. nkongsamba | 2.9 (10) | 2.1 (10) | 1.3 (10) | Sa M 11.7–11.8 |
|
Nlonako, Engugue1382 | 04°54'21.6"N, 009°58'20.6"E | 1382 |
L. nkongsamba | 2.9 (11) | 2.1 (11) | 1.3 (11) | Sa M 11.5–14.4 | LaboPasmat X104 | Nlonako, Eyimba | 04°53'30.7"N, 009°59'05.1"E | 1194 |
L. nkongsamba | 2.9 (6) | 2.1 (6) | 1.3 (6) | Ad 12 | LaboPasmat X104Y | Nlonako, Engugue1462 | 04°54'21.9"N, 009°58'22.4"E | 1462 |
L. nkongsamba | Ad F 14–15 | LaboPasmat X105 | Nlonako, Engugue1462 | 04°54'21.9"N, 009°58'22.4"E | 1462 | |||
L. nkongsamba | Sa 6.60 | LaboPasmat X105Y | Nlonako, Engugue1462 | 04°54'21.9"N, 009°58'22.4"E | 1462 | |||
L. edeaensis | 3.0 (21) | 2.5 (21) | 1.4 (21) | Ad M 14.1–17.5 | See |
Lake Ossa | 03°48'56.1"N, 010°03'18.5"E | 90 |
L. edeaensis | Ad F 13.0–19.9 | See |
Lake Ossa | 03°48'56.1"N, 010°03'18.5"E | 90 | |||
L. balssi | 2.9 (8) | 2.1 (8) | 1.2 (8) | Ad M 13.3–16.2 | See |
Manengouba | 05°01'56.9"N, 009°49'37.8"E | 1958 |
L. balssi | Ad F 13.3–14.8 | See |
Manengouba | 05°01'56.9"N, 009°49'37.8"E | 1958 |
Differences in certain morphological characters of the specimens of L. yabassi from two populations in the Ebo Forest are noteworthy (Table
Comparison of selected morphological characters between two populations (morphotypes) of Louisea yabassi from Ebo Forest, Cameroon.
Character | Population no. 1 (morphotype 1) | Population no. 2 (morphotype 2) |
---|---|---|
Epibranchial tooth | reduced to granule (Fig. |
small (Fig. |
Intermediate tooth between exorbital & epibranchial teeth | distinct, but small (Fig. |
relatively large, triangular (Fig. |
Major cheliped dactylus | slim, gently arched (Fig. |
slim, almost straight (Fig. |
Cheliped carpus inner margin teeth | both distal and proximal teeth large, positioned some distance from each other (Fig. |
distal tooth larger than proximal tooth, positioned relatively closer to each other (Fig. |
Mandible inferior lateral corner of coxa (biting edge) | lacking pointed tip (Fig. |
with pointed tip (Fig. |
Margin of male sternal sulcus S3 | with long setae (Fig. |
lacking setae (Fig. |
Male sternal sulcus S3/4 | reduced to 2 deep lateral notches (Fig. |
indiscernible (Fig. |
Comparison of selected morphological characters between two populations (morphotypes) of Louisea nkongsamba from Mount Nlonako, Cameroon.
Characters | Morphotype 1 | Morphotype 2 |
---|---|---|
Nlonako Engugue1462 | Nlonako Eyimba, Ngaltongue, Engugue1382, Nguegue and type specimens | |
Exorbital tooth | relatively large (Fig. |
relatively small (Fig. |
Epibranchial tooth | small (Fig. |
reduced to granule (Fig. |
Intermediate tooth between exorbital & epibranchial teeth | relatively large (Fig. |
relatively small (Fig. |
Lateral margin posterior to epibranchial tooth | lined with small granules (Fig. |
smooth (Fig. |
Postfrontal crest | poorly defined, completely traversing carapace, reaching anterolateral margins at intermediate tooth (Fig. |
clearly defined, completely traversing carapace, not reaching anterolateral margins (Fig. |
Major cheliped dactylus | slim, straight (Fig. |
slim, gently arched (Fig. |
Cheliped carpus inner margin teeth | distal tooth larger than proximal tooth, both slender, positioned some distance from each other (Fig. |
distal tooth larger than proximal tooth, both robust, positioned relatively closer to each other (Fig. |
Medial inferior margin of cheliped merus | with small but distinct jagged distal tooth angled outward at 60°, followed by numerous granules and small teeth (Fig. |
with large jagged distal tooth angled outward at 90°, followed by numerous granules and small teeth decreasing in size proximally (Fig. |
Mandible inferior lateral corner of coxa (biting edge) | lacking pointed tip (Fig. |
with pointed tip (Fig. |
Male sternal sulcus S3/4 | indiscernible except for 2 deep lateral notches (Fig. |
indiscernible, lacking lateral notches (Fig. |
Louisea yabassi from Ebo Forest, Cameroon, adult male (CW 20.2 mm) from site no. 1 (A, C, E, G), adult male (CW 21.3 mm) from site no. 2 (B, D, F, H). Louisea nkongsamba from Nlonako, Cameroon, adult male (CW 18.2 mm) from Eyimba (I, K, M, O), subadult male (CW 12.0 mm) from Enguegue (site no. 1) (J, L, M, P). A, B, I, J dorsal view of cephalothorax C, D, K, L frontal view of cephalothorax E, F, M, N ventral view of thoracic sternum G, H, O, P frontal view of left mandible. Scale bars: 8 mm (A, C, E); 9 mm (B, D, F); 1 mm (G, H); 4 mm (I, K); 12 mm (J, M); 3 mm (L); 8 mm (N); 2 mm (O, P).
Louisea nkongsamba from Nlonako, Cameroon, subadult male (CW 12.0 mm) from Enguegue (site no. 1) (A, D, I), adult male (CW 18.2 mm) from Eyimba (B, E, J). Louisea yabassi from Ebo Forest, Cameroon, adult male (CW 21.3 mm) from site no. 2 (C, H), adult male (CW 20.2 mm) from site no. 1 (F, G). A, B, F, H frontal view of chela C, D, E, G cheliped carpus I, J cheliped merus. Scale bars: 5 mm (A–J).
The pubertal moult estimates indicate that the largest Louisea species is L. yabassi (CW 24 mm); the smallest species is L. balssi (CW 16.2 mm); while the size ranges of L. edeaensis and L. nkongsamba overlap with each other (~CW 20 mm) in between those of L. balssi and L. yabassi (Table
The present molecular analyses support recognition of three lineages (as population 1, 2, and 3) of L. nkongsamba from six sites on Mount Nlonako (Figs
Number of individuals of Louisea nkongsamba studied per site/population.
Sites | Altitude (m a.s.l.) | Number of individuals in Population 1 | Number of individuals in Population 2 | Number of individuals in Population 3 |
---|---|---|---|---|
Enguegue no. 2 | 1382 | 1 | 3 | 1 |
Ngaltongue no. 1 | 1176 | 4 | 1 | 0 |
Ngaltongue no. 2 | 1256 | 4 | 0 | 1 |
Enguegue no. 1 | 1462 | 1 | 3 | 1 |
Nguegue | 1211 | 3 | 2 | 0 |
Eyimba | 938 | 1 | 3 | 1 |
Total | 14 | 12 | 4 |
The uncorrected p-distance between Louisea species pairs reveal that each is well isolated from other taxa assigned to this genus (Table
Pairwise uncorrected p-distances of COI, 16S rRNA, and 12S rRNA partial sequences between the species of Louisea.
Louisea species | Uncorrected p-distance | ||
---|---|---|---|
COI | 16S rRNA | 12S rRNA | |
L. nkongsamba and L. yabassi | 3.97% | 2.15% | 3.77% |
L. nkongsamba and L. edeaensis | 8.61% | 4.33% | 4.92% |
L. nkongsamba and L. balssi | 7.98% | 5.04% | 12.42% |
L. edeaensis and L. yabassi | 8.88% | 4.35% | 4.27% |
L. edeaensis and L. balssi | 10.15% | 7.77% | 11.04% |
L. yabassi and L. balssi | 7.32% | 5.36% | 12.94% |
The phylogenetic analysis indicates that L. balssi from Mount Manengouba is the ancestral species, while L. edeaensis from Lake Ossa is the sister species of the clade that includes L. yabassi and L. nkongsamba (Fig.
The haplotype network recovered eight haplotypes for L. nkongsamba with maximum four mutation steps between the specimens of this species (Fig.
The four Louisea species recovered here each has a monophyletic clade (Fig.
Pairwise uncorrected p-distances of COI, 16S rRNA, and 12S rRNA partial sequences between the populations of Louisea nkongsamba.
Louisea nkongsamba | Uncorrected p-distance | ||
---|---|---|---|
COI | 16S rRNA | 12S rRNA | |
Population 2 and Population 3 | 0.48% | 0.87% | 0.95% |
Population 2 and Population 1 | 0.70% | 0.20% | 0.71% |
Population 3 and Population 1 | 0.52% | 0.61% | 1.18% |
Louisea species are found in different habitats within the rainforest zone: L. balssi in montane forest streams; L. nkongsamba in submontane forest streams; L. edeaensis on the islands of a freshwater lake; and L. yabassi in lowland forest streams. Louisea nkongsamba specimens from cool mountain streams draining the submontane forests of Mt. Nlonako (938–1462 m a.s.l.) are small-bodied with adult males measuring CWs 16–20 mm. Louisea balssi adult males from the cool high-altitude streams (1,958 m a.s.l.) draining into the caldera of Mount Manengouba are also noticeably small-bodied (CWs 13.0–16.2 mm). This agrees with the findings of
The two L. yabassi populations from localities ~2–3 km apart in the Ebo Forest genetically form a single clade with little lineage differentiation (Fig.
We thank the Rufford Small Grant Foundation for funding fieldwork in the South and Southwestern Regions of Cameroon, and the Museum für Naturkunde for funding the first author during a research visit to Germany. We also thank Mr Robert Schreiber and Bernhard Schurian, the Digital and DNA lab managers, respectively, at the Museum für Naturkunde, for their important collaboration during the research visit by the first author to Germany during 2021, and Prof. Alain Didier Missoup for the administrative support of the fifth author at the Zoology Unit, Laboratory of Biology and Physiology of Animal Organisms, Faculty of Science, University of Douala.