Research Article |
Corresponding author: Sho Tsukamoto ( esutukamoto153@gmail.com ) Academic editor: Lucio Bonato
© 2022 Sho Tsukamoto, Satoshi Shimano, Katsuyuki Eguchi.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Tsukamoto S, Shimano S, Eguchi K (2022) Two new species of the dwarf centipede genus Nannarrup Foddai, Bonato, Pereira & Minelli, 2003 (Chilopoda, Geophilomorpha, Mecistocephalidae) from Japan. ZooKeys 1115: 117-150. https://doi.org/10.3897/zookeys.1115.83946
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The genus Nannarrup Foddai, Bonato, Pereira & Minelli, 2003 is a monotypic genus established on the basis of the possibly introduced species N. hoffmani Foddai, Bonato, Pereira & Minelli, 2003, from New York, USA. In the present study, in a field survey conducted throughout Japan, Nannarrup-like specimens were collected from Honshu, Shikoku, and Kyushu. These specimens clearly showed the diagnostic characteristics of the genus but were morphologically distinct from N. hoffmani. Furthermore, morphological analysis and DNA barcoding revealed that these specimens could be assigned to two distinct undescribed species. On the basis of these results, N. innuptus Tsukamoto, sp. nov. and N. oyamensis Tsukamoto, sp. nov. are described. The three Nannarrup species can be distinguished from each other on the basis of the following combination of characteristics: presence or absence of a pair of smooth or weakly areolate areas along the posterior part of the paraclypeal sutures; the width-to-length ratio of the denticle on the trochanteroprefemur; the pigmentation of the denticle on the tarsungulum. Moreover, the field survey resulted in the collection of exclusively female specimens of N. innuptus Tsukamoto, sp. nov., which shows the possibility of parthenogenesis of this species.
Description, DNA barcoding, molecular phylogeny, morphology, sex ratio, taxonomy
The geophilomorph family Mecistocephalidae Bollman, 1893, is a distinct monophyletic group, which is well characterized morphologically by a cephalic capsule and the forcipular segment that are obviously sclerotized and darker than the remaining trunk segments, the mandible with a series of pectinate lamellae only, trunk sternites with an internal apodeme, a mid-longitudinal sulcus, and the intraspecific invariance in the segment number, except in some species of the genus Mecistocephalus Newport, 1843 (
The subfamily Arrupinae comprises four valid genera: Arrup Chamberlin, 1912; Agnostrup Foddai, Bonato, Pereira & Minelli, 2003; Partygarrupius Verhoeff, 1939; Nannarrup Foddai, Bonato, Pereira & Minelli, 2003. Arrupinae has been reported mainly in East Asia and is diversified at the species level in Japan (
The genus Nannarrup was established for a single species, N. hoffmani Foddai, Bonato, Pereira & Minelli, 2003. The genus has peculiar morphological characteristics (for details, see the section “Taxonomic account”), which likely evolved as a result of miniaturization. Nannarrup hoffmani was originally described on the basis of specimens from New York City, USA.
In field surveys in Honshu, Shikoku and Kyushu, Japan (2017–2022), the authors of the present study (ST and KE) collected 88 mecistocephalid specimens, which clearly showed the diagnostic characteristics of the genus Nannarrup. However, these “Nannarrup-like” specimens can be distinguished from N. hoffmani by the shape of the denticle on the forcipular trochanteroprefemur. Therefore, the present study aimed to assign the Japanese “Nannarrup-like” specimens to the current classification of Arrupinae using an integrative approach of morphological analysis and DNA barcoding, using the mitochondrial COI and 16S ribosomal RNA genes, and the nuclear 28S ribosomal RNA genes.
Eighty-eight “Nannarrup-like” specimens, including 13 juveniles (in which sex determination is not possible), were collected by hand from Honshu (Aomori, Akita, Iwate, Yamagata, Fukushima, Niigata, Tokyo, Kanagawa, Shizuoka, Wakayama, Hyogo, Okayama, and Yamaguchi prefectures), Shikoku (Kochi and Ehime prefectures), and Kyushu (Fukuoka, Miyazaki, and Kagoshima prefectures). These specimens were included as ingroup in the present study. Each specimen was specified by its own specimen identification number in the form “TSYYYYMMDD-XX,” where TS is an abbreviation of the first author’s name, Tsukamoto Sho; YYYYMMDD designates the date on which the specimen was collected; XX is the identification number assigned to each specimen collected on a particular date (e.g., TS20171010-01).
Type specimens of Nannarrup were deposited at the Collection of Myriapoda, Department of Zoology, National Museum of Nature and Science, Tokyo (NSMT), and Museum of Nature and Human Activities, Hyogo (MNHAH). See the “Taxonomic account” section for the deposition site of each type specimen. All non-type voucher specimens of Nannarrup are retained by the first author. The collection sites of examined specimens are shown in Fig.
Cephalic capsule, maxillae, mandibles, the forcipular segment and leg-bearing segments were made transparent using lactic acid or the Chelex-TE protocol to examine the anatomy and produce images (
Genomic DNA was extracted from one or two legs, the head, or a body segment of each specimen by following the Chelex-TE-ProK protocol (
PCR amplification was performed in a MiniAmp Thermal Cycler (Thermo Fisher Scientific, Waltham, Massachusetts, USA) in a 10.5-µL reaction volume containing 5 µL 2× PCR buffer for KOD FX Neo, 2 µL of 2 mM dNTPs, 0.3 µL of 10 pmol/µL forward and reverse primers, 0.2 µL of 1.0 U/µL DNA polymerase KOD FX Neo (TOYOBO KFX-201X5), and 1.0 µL DNA template. The sequences of primers for the mitochondrial COI and 16S and nuclear 28S genes are shown in Table
Genes | Primer name | Sequence (5' - 3') | Source |
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COI | LCO-CH | TTT CAA CAA AYC AYA AAG ACA TYG G |
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HCO-CH | TAA ACT TCT GGR TGR CCR AAR AAT CA | ||
16S rRNA | 16Sa | CGC CTG TTT ATC AAA AAC AT |
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16Sbi | CTC CGG TTT GAA CTC AGA TCA | ||
28S rRNA | 28S D1F | GGG ACT ACC CCC TGA ATT TAA GCA T |
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28S rD4b | CCT TGG TCC GTG TTT CAA GAC |
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Amplification conditions for mitochondrial COI were as follows: 98 °C for 2 min; 5 cycles of 98 °C for 10 s, 45 °C for 30 s, and 68 °C for 45 s; 40 cycles of 98 °C for 10 s, 48.5 °C for 30 s (annealing step), and 68 °C for 45 s; and 68 °C for 7 min. If the target fragment of COI was not appropriately amplified, the annealing temperature was changed from 48.5 °C to 50 °C, and PCR was performed again by omitting the first five cycles of annealing and the extension step.
Amplification conditions for mitochondrial 16S were as follows: 98 °C for 2 min; 35 cycles of 98 °C for 10 s, 45 °C for 30 s (annealing step), and 68 °C for 45 s; and 68 °C for 7 min. If the target fragment of 16S was not appropriately amplified, the annealing temperature was changed from 45 °C to 48 °C, and the number of annealing cycles was changed from 35 to 45.
Amplification conditions for nuclear 28S were as follows: 98 °C for 2 min; 5 cycles of 98 °C for 10 s, 42 °C for 30 s, and 68 °C for 1 min; 30 cycles of 98 °C for 10 s, 50 °C for 30 s (annealing step), and 68 °C for 1 min; and 68 °C for 7 min. If the target fragment of 28S was not appropriately amplified, the annealing temperature was changed from 50 °C to 48 °C, and the number of annealing cycles was changed from 30 to 40–45 cycles. Furthermore, PCR was performed again by omitting the first five cycles of annealing and the extension step.
The amplified products were incubated at 37 °C for 30 min and 80 °C for 20 min with IllustraTM ExoStar (GE Healthcare, Buckinghamshire, UK) to remove any excess primers and nucleotides. All nucleotide sequences were determined by direct sequencing using ABI PRISM BigDye Terminator Cycle Sequencing Kit ver. 3.1 (Thermo Fisher Scientific) or BrilliantDyeTM Terminator Cycle Sequencing Kit v. 3.1 (Nimagen, B.V., Nijmegen, Netherlands) with an ABI 3130xl automated sequencer (Thermo Fisher Scientific). The sequences were assembled using ChromasPro 1.7.6 (Technelysium Pty Ltd., Australia) and deposited in the databases DDBJ, EMBL, and GenBank under the accession numbers LC715482–LC715706 (Table
Species | Accession No. | Reference | ||
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COI | 16S | 28S | ||
Nannarrup innuptus sp. nov. | LC715482–LC715554 | LC715557–LC715629 | LC715632–LC715704 | the present study |
Nannarrup oyamensis sp. nov. | LC715455–LC715556 | LC715530–LC715631 | LC715605–LC715706 | the present study |
Dicellophilus carniolensis (C.L. Koch, 1847) | KF569305 | HM453225 | HM453285 |
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Mecistocephalus guildingii Newport, 1843 | AY288747 | AY288728 | HM453283 |
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Mecistocephalus subgigas (Silvestri, 1919) | AF370837 | AF370862 | HM453284 |
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The sequences obtained using the methods described above were used for phylogenetic analyses; the COI, 16S, and 28S sequences of the mecistocephalid species Dicellophilus carniolensis C.L. Koch, 1847; Mecistocephalus guildingii Newport, 1843; and Mecistocephalus subgigas (Silvestri, 1919), obtained from GenBank were used as outgroups (Table
All sequences were aligned using MAFFT v. 7.475 (
Maximum-likelihood (ML) trees were created on the basis of the sequence dataset for each gene using IQ-tree 1.6.12 (
Aligned datasets (COI, 16S, and 28S) used for phylogenetic analyses were also used to calculate the genetic distances. Pairwise p-distances and Kimura-two-parameter (K2P) distances were calculated for each of the three genes of “Nannarrup-like” specimens using MEGA X (
All 88 “Nannarrup-like” specimens collected in Japan possessed the diagnostic characteristics of the subfamily Arrupinae (
Furthermore, these “Nannarrup-like” specimens possessed the diagnostic characteristics of the genus Nannarrup established by
These “Nannarrup-like” specimens (and even N. hoffmani) can be distinguished from the genus Arrup, which is speciose in the Japanese Archipelago (
The Japanese Nannarrup specimens were distinguishable from N. hoffmani on the basis of two morphological characteristics: the width-to-length ratio of the denticle of the trochanteroprefemur, which was 1:0.53 in N. hoffmani (measured from fig. 14 in
In two specimens from Kanagawa prefecture, in the Kanto Region of Japan (TS20210217-04 and TS20210725-02), “two additional smooth areas along the posterior part of the paraclypeal sutures” in the clypeus (sensu
Therefore, the Japanese Nannarrup specimens were divided into two morphospecies, namely N. sp. 1 and N. sp. 2 (see Table
Species | Clypeus | Forcipule | |
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Two additional smooth areas along paraclypeal sutures | The width to length ratio of the denticle on trochanteroprefemur | Pigmentation of the tooth on the tarsungulum | |
Nannarrup innuptus sp. nov. (= Nannarrup sp. 1) | + | 1: 1.3–1.6 | equal to the denticle on trochanteroprefemur |
Nannarrup oyamensis sp. nov. (= Nannarrup sp. 2) | - | 1: 1.3 | equal to the denticle on trochanteroprefemur |
Nannarrup hoffmani Foddai, Bonato, Pereira & Minelli, 2003 | + | 1: 0.5 | slighter than the denticle on trochanteroprefemur |
The COI, 16S, and 28S sequences were successfully determined for 73 specimens of Nannarrup sp. 1 (except for two specimens from Tokyo, i.e., TS20171010-01 and TS20180627-01) and both specimens of N. sp. 2.
In the ML phylogenetic trees based on the COI dataset (Fig.
Maximum-likelihood tree of Nannarrup specimens and outgroups (Mecistocephalus guildingii, M. subgigas, and Dicellophilus carniolensis) based on the COI dataset. Nodal values are derived from Ultrafast bootstrap (UFBoot) and SH-like approximate likelihood ratio test (SH-aLRT). Asterisk (*) indicates values of 100% in UFBoot and SH-aLRT. A hyphen (-) indicates values <95% in UFBoot and <80% in SH-aLRT. Nodal values are not shown when both UFBoot and SH-aLRT values are <95% and <80%, respectively. The unit of evolutionary distance is the number of base substitutions per site. Ingroup specimens are shown as their specimen identification number. Abbreviations: Ao = Aomori pref.; Ak = Akita pref.; Iw = Iwate pref.; Ya = Yamagata pref.; Fs = Fukushima pref.; Ni = Niigata pref.; To = Tokyo pref.; Kn = Kanagawa pref.; Sh = Shizuoka pref.; Wa = Wakayama pref.; Hy = Hyogo pref.; Ok = Okayama pref.; Yu = Yamaguchi pref.; Ko = Kochi pref.; Eh = Ehime pref.; Fo = Fukuoka pref.; Mi = Miyazaki pref.; Kg = Kagoshima pref.
The ML phylogenetic trees based on the 16S dataset (Fig.
Maximum-likelihood tree of Nannarrup specimens and outgroups (Mecistocephalus guildingii, M. subgigas, and Dicellophilus carniolensis) based on the 16S dataset. Nodal values are derived from Ultrafast bootstrap (UFBoot) and SH-like approximate likelihood ratio test (SH-aLRT). Asterisk (*) indicates values of 100% in UFBoot and SH-aLRT. A hyphen (-) shows < 95% in UFBoot and < 80% in SH-aLRT. Nodal values are not shown when both UFBoot and SH-aLRT values are < 95% and < 80%, respectively. The unit of evolutionary distance is the number of base substitutions per site. Ingroup specimens are shown as their specimen identification number. Abbreviations: Ao = Aomori pref.; Ak = Akita pref.; Iw = Iwate pref.; Ya = Yamagata pref.; Fs = Fukushima pref.; Ni = Niigata pref.; To = Tokyo pref.; Kn = Kanagawa pref.; Sh = Shizuoka pref.; Wa = Wakayama pref.; Hy = Hyogo pref.; Ok = Okayama pref.; Yu = Yamaguchi pref.; Ko = Kochi pref.; Eh = Ehime pref.; Fo = Fukuoka pref.; Mi = Miyazaki pref.; Kg = Kagoshima pref.
In the ML phylogenetic trees based on the 28S dataset (Fig.
Maximum-likelihood tree of Nannarrup specimens and outgroups (Mecistocephalus guildingii, M. subgigas, and Dicellophilus carniolensis) based on the 28S dataset. Nodal values are derived from Ultrafast bootstrap (UFBoot) and SH-like approximate likelihood ratio test (SH-aLRT). Asterisk (*) indicates values of 100% in UFBoot and SH-aLRT. A hyphen (-) shows < 95% in UFBoot and < 80% in SH-aLRT. Nodal values are not shown when both UFBoot and SH-aLRT values are < 95% and < 80%, respectively. The unit of evolutionary distance is the number of base substitutions per site. Ingroup specimens are shown as their specimen identification number. Abbreviations: Ao = Aomori pref.; Ak = Akita pref.; Iw = Iwate pref.; Ya = Yamagata pref.; Fs = Fukushima pref.; Ni = Niigata pref.; To = Tokyo pref.; Kn = Kanagawa pref.; Sh = Shizuoka pref.; Wa = Wakayama pref.; Hy = Hyogo pref.; Ok = Okayama pref.; Yu = Yamaguchi pref.; Ko = Kochi pref.; Eh = Ehime pref.; Fo = Fukuoka pref.; Mi = Miyazaki pref.; Kg = Kagoshima pref.
According to the COI dataset of Nannarrup, the minimum divergence between N. sp. 1 and N. sp. 2 was 14.13% in p-distance and 15.73% in K2P distance (TS20211101-15 and TS20211101-16 from Nagasaki prefecture vs TS20210217-04 and TS20210725-02 from Kanagawa prefecture), whereas the maximum internal divergence within N. sp. 1 was 9.726% in p-distance and 10.58% in K2P distance (TS20211030-01 from Niigata prefecture vs TS20210412-01 from Kanagawa prefecture).
According to the 16S dataset of Nannarrup, the minimum divergence between N. sp. 1 and N. sp. 2 was 14.92% in p-distance and 16.68% in K2P distance (TS20220306-11 from Kochi prefecture and TS20220307-03, TS20220307-04, TS20220307-05, TS20220307-11, TS20220307-12, TS20220307-15, TS20220307-16, TS20220307-17 from Ehime prefecture vs TS20210217-04 and TS20210725-02 from Kanagawa prefecture), whereas the maximum internal divergence within N. sp. 1 was 7.056% in p-distance and 7.443% in K2P distance (TS20211030-01 from Niigata prefecture vs TS20211102-04 from Nagasaki prefecture).
According to the 28S dataset of Nannarrup, the minimum divergence between N. sp. 1 and N. sp. 2 was 1.207% in p-distance and 1.218% in K2P distance (TS20220301-01, TS20220301-04 TS20220302-03, TS20220302-11 from Kochi prefecture, TS20220307-07, TS20220307-13, TS20220307-14 from Ehime prefecture and TS20200411-06 from Shizuoka prefecture vs TS20210217-04 and TS20210725-02 from Kanagawa prefecture), whereas the maximum internal divergence within N. sp. 1 was 0.6757% in p-distance and 0.6796% in K2P distance (TS20220307-11, TS20220307-12, TS20220307-15, TS20220307-16, TS20220307-17 from Ehime prefecture vs TS20190913-01 from Tokyo prefecture).
Nannarrup Foddai, Bonato, Pereira & Minelli, 2003: 1255–1256.
Nannarrup hoffmani Foddai, Bonato, Pereira & Minelli, 2003
Partly modified from
The following characters included in the diagnosis sensu
Holotype. 1 adult female, Yugashima, Izu-shi, Shizuoka prefecture, Japan (34°51.39'N, 138°55.40'E), 3 May 2021, coll. Mayu Susukida (labeled as TS20210503-09), deposited at the Collection of Myriapoda, Department of Zoology, NSMT.
Paratype. 4 females, Yugashima, Izu-shi, Shizuoka prefecture, Japan (34°51.39'N, 138°55.39'E), 11 April 2021, leg. Katsuyuki Eguchi (labeled as TS20210411-04, TS20210411-05, TS20210411-06, TS20210411-07, respectively), deposited at the Collection of Myriapoda, Department of Zoology, NSMT. 5 females, Yugashima, Izu-shi, Shizuoka prefecture, Japan (34°51.39'N, 138°55.40'E), 3 May 2021, leg. Mayu Susukida (labeled as TS20210503-02, TS20210503-05, TS20210503-06, TS20210503-07, TS20210503-10, respectively), deposited at MNHAH.
1 female, Minamiosawa, Hachioji-shi, Tokyo prefecture, Japan (35°37.02'N, 139°22.73'E), 27 June 2018, leg. Sho Tsukamoto (labeled as TS20180627-01). 1 female, Hirasawa, Akiruno-shi, Tokyo prefecture, Japan (35°43.64'N, 139°19.20'E), 10 October 2017, leg. Sho Tsukamoto (labeled as TS20171010-01). 3 females, Hirasawa, Akiruno-shi, Tokyo prefecture, Japan (35°43.64'N, 139°19.20'E), 13 September 2019, leg. Sho Tsukamoto (labeled as TS20190913-01, TS20190913-02, TS20190913-03, respectively). 1 female, Shiroyama, Kagoshima-shi, Kagoshima prefecture, Japan (31°35.88'N, 130°32.98'E), 2 July 2019, leg. Sho Tsukamoto (labeled as TS20190702-06). 1 female, Shibakusa, Hatori, Ten-ei-mura, Iwase-gun, Fukushima prefecture, Japan (37°14.37'N, 140°03.86'E), 21 September 2020, leg. Katsuyuki Eguchi (labeled as TS20200921-02). 1 female, Kubo, Hiranuma, Rokkasho-mura, Kamikita-gun, Aomori prefecture, Japan (40°52.37'N, 141°21.76'E), 9 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201009-01). 1 female, Nakagawara, Nagano, Daisen-shi, Akita prefecture, Japan (39°32.41'N, 140°31.76'E), 13 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201013-03). 1 female, Mukounadaka, Nadaka, Tozawa-mura, Mogami-gun, Yamagata prefecture, Japan (38°44.96'N, 140°11.15'E), 13 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201013-04). 1 female, Nakagawa, Kaneyama-machi, Onuma-gun, Fukushima prefecture, Japan (37°28.25'N, 139°31.81'E), 18 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201018-03). 1 female, Sawanishi, Mizunuma, Kaneyama-machi, Onuma-gun, Fukushima prefecture, Japan (37°28.87'N, 139°33.48'E), 18 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201018-04). 1 female, Tai, Yamasaki-cho, Shisou-shi, Hyogo prefecture, Japan (35°02.62'N, 134°33.68'E), 24 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201024-01). 1 female, Kageishi, Nishiawakura-son, Aida-gun, Okayama prefecture, Japan (35°10.94'N, 134°20.64'E), 24 October 2020, leg. Katsuyuki Eguchi (labeled as TS20201024-03). 2 females and 2 juveniles (sex unknown), Teraodai, Ayase-shi, Kanagawa prefecture, Japan (35°27.76'N, 139°25.13'E), 10 April 2021, leg. Joe Kutsukake (labeled as TS20210410-01 and TS20210410-02 for females, TS20210410-03 and TS20210410-04 for juveniles, respectively). 2 females, Nebukawa, Odawara-shi, Kanagawa prefecture, Japan (35°12.00'N, 139°08.22'E), 12 April 2021, leg. Joe Kutsukake (labeled as TS20210412-01 and TS20210412-02, respectively). 3 juveniles (sex unknown), Nebukawa, Odawara-shi, Kanagawa prefecture, Japan (35°12.23'N, 139°08.43'E), 12 April 2021, leg. Joe Kutsukake (labeled as TS20210412-03, TS20210412-04 and TS20210412-05, respectively). 1 female, Shimada, Inami-cho, Hidaka-gun, Wakayama prefecture, Japan (33°47.36'N, 135°14.06'E), 3 of May 2021, leg. Katsuyuki Eguchi (labeled as TS20210503-12). 1 female, Kurisugawa, Nakahechi-cho, Tanabe-shi, Wakayama prefecture, Japan (33°47.69'N, 135°30.16'E), 3 of May 2021, leg. Katsuyuki Eguchi (labeled as TS20210503-13). 1 female, Futo, Ito-shi, Shizuoka prefecture, Japan (34°54.58'N, 139°07.72'E), 9 June 2021, leg. Joe Kutsukake (labeled as TS20210609-03). 1 female, Futo, Ito-shi, Shizuoka prefecture, Japan (34°54.66'N, 139°07.19'E), 9 June 2021, leg. Joe Kutsukake (labeled as TS20210609-04). 1 juvenile (sex unknown), Shishihara, Shimizu-ku, Shizuoka-shi, Shizuoka prefecture, Japan (35°11.94'N, 138°31.28'E), 23 of May 2021, leg. Katsuyuki Eguchi (labeled as TS20210523-04). 1 female, Nishiaraya, Tsuruoka-shi, Yamagata prefecture, Japan (38°38.64'N, 139°49.73'E), 29 May 2021, leg. Katsuyuki Eguchi (labeled as TS20210529-03). 3 females, Den-enchofu, Ota-ku, Tokyo prefecture, Japan (35°35.51'N, 139°39.86'E), 30 June 2021, leg. Joe Kutsukake (labeled as TS20210630-01, TS20210630-02 and TS20210630-03). 1 subadult female, Oyama, Isehara-shi, Kanagawa prefecture, Japan (35°25.74'N, 139°14.44'E), 25 July 2021, coll. Sho Tsukamoto (labeled as TS20210725-01; cephalic capsule lost). 1 female, Hikime, Miyako-shi, Iwate prefecture, Japan (39°37.49'N, 141°49.41'E), 6 September 2021, leg. Katsuyuki Eguchi (labeled as TS20210906-01). 3 juveniles (sex unknown), Hiyamizucho, Kagoshima-shi, Kagoshima prefecture, Japan (31°36.21'N, 130°33.02'E), 22 September 2021, leg. Joe Kutsukake (labeled as TS20210922-01, TS20210922-02 and TS20210922-03). 1 female, Natsuocho, Miyakonojo-shi, Miyazaki prefecture, Japan (31°52.49'N, 130°57.50'E), 29 September 2021, leg. Joe Kutsukake (labeled as TS20210929-01). 2 females and 1 juvenile (sex unknown), Minamiosawa, Hachioji-shi, Tokyo prefecture, Japan (35°37.43'N, 139°23.05'E), 18 October 2021, leg. Joe Kutsukake (labeled as TS20211018-03, TS20211018-04 for females and TS20211018-05 for the juvenile, respectively). 2 females and 1 juvenile (sex unknown), Era, Toyotacho, Shimonoseki-shi, Yamaguchi prefecture, Japan (34°10.56'N, 131°02.48'E), 26 October 2021, leg. Sho Tsukamoto (labeled as TS20211026-04, TS20211026-10 for females and TS20211026-05 for the juvenile, respectively). 1 female, Hikosan, Soeda-machi, Tagawa-gun, Fukuoka prefecture, Japan (33°29.06'N, 130°55.94'E), 29 October 2021, leg. Sho Tsukamoto (labeled as TS20211029-04). 1 female, Tomaruhinoe, Tsunan-machi, Nakauonuma-gun, Niigata prefecture, Japan (37°02.16'N, 138°39.46'E), 30 October 2021, leg. Katsuyuki Eguchi (labeled as TS20211030-01). 1 female, Maeda, Yahatahigashi-ku, Kitakyushu-shi, Fukuoka prefecture, Japan (33°51.35'N, 130°47.72'E), 30 October 2021, leg. Sho Tsukamoto (labeled as TS20211030-10). 2 females and 2 specimens (the lower half of body lost, sex unknown), Nishiyama, Nagasaki-shi, Nagasaki prefecture, Japan (32°45.89'N, 129°53.00'E), 1 November 2021, leg. Sho Tsukamoto (labeled as TS20211101-15, TS20211101-16 for females and TS20211101-17, TS20211101-18 for sex-unknown specimens, respectively). 1 female, Nijigaoka, Nagasaki-shi, Nagasaki prefecture, Japan (32°47.73'N, 129°50.00'E), 2 November 2021, leg. Sho Tsukamoto (labeled as TS20211102-04). 1 female, Murotsu, Muroto-shi, Kochi prefecture, Japan (33°18.06'N, 134°09.31E), 1 March 2022, leg. Katsuyuki Eguchi (labeled as TS20220301-01). 1 female, Murotomisakicho, Muroto-shi, Kochi prefecture, Japan (33°16.87'N, 134°10.65E), 2 March 2022, leg. Joe Kutsukake (labeled as TS20220302-03). 1 female, Kamoi, Yokosuka-shi, Kanagawa prefecture, Japan (35°15.44'N, 139°44.61E), 21 March 2022, leg. Katsuyuki Eguchi (labeled as TS20220321-03). 1 female, Murotsu, Muroto-shi, Kochi prefecture, Japan (33°18.07'N, 134°09.31E), 1 March 2022, leg. Joe Kutsukake (labeled as TS20220301-04). 3 females, Makigawa, Tsushimacho, Uwajima-shi, Ehime prefecture, Japan (33°05.74'N, 132°35.58E), 7 March 2022, leg. Joe Kutsukake (labeled as TS20220307-03, TS20220307-04, TS20220307-05, respectively). 2 females, Sunokawa, Ainan-cho, Minamiuwa-gun, Ehime prefecture, Japan (33°02.50'N, 132°29.18E), 7 March 2022, leg. Joe Kutsukake (labeled as TS20220307-06, TS20220307-07, respectively). 1 female, Matsuo, Tosashimizu-shi, Kochi prefecture, Japan (32°44.16'N, 132°58.57E), 6 March 2022, leg. Joe Kutsukake (labeled as TS20220306-11). 2 females, Makigawa, Tsushimacho, Uwajima-shi, Ehime prefecture, Japan (33°05.87'N, 132°36.98E), 7 March 2022, leg. Joe Kutsukake (labeled as TS20220307-09, TS20220307-10, respectively). 2 females, Ryoke, Muroto-shi, Kochi prefecture, Japan (33°17.23'N, 134°10.59E), 2 March 2022, leg. Joe Kutsukake (labeled as TS20220302-11, TS20220302-12, respectively). 2 females and 1 specimen (the lower half of body lost, sex unknown), Motootsu, Muroto-shi, Kochi prefecture, Japan (33°18.81'N, 134°07.33E), 1 March 2022, leg. Joe Kutsukake (labeled as TS20220301-05, TS20220301-06 for females and TS20220301-07 for sex-unknown specimens, respectively). 7 females, Iwabuchi, Tsushimacho, Uwajima-shi, Ehime prefecture, Japan (33°08.81'N, 132°32.99E), 7 March 2022, leg. Joe Kutsukake (labeled as TS20220307-11, TS20220307-12, TS20220307-13, TS20220307-14, TS20220307-15, TS20220307-16, TS20220307-17, respectively).
The species name is derived from unmarried in Latin. In the Japanese population, males of this species have not been discovered despite the wide collection range in Japan.
Clypeus with a pair of smooth or weakly areolate areas along the posterior part of the paraclypeal sutures; forcipular trochantroprefemur with a large denticle (longer than wide); tarsungulum with a well-pigmented denticle; metasternite of ultimate leg-bearing segment wider than long.
General features
(Fig.
Cephalic capsule
(Fig.
Antenna
(Fig.
Nannarrup innuptus sp. nov., holotype (TS20210503-09) A right part of head and right antenna, dorsal B right part of head and right antenna, ventral C antennal article XIV, dorsal D antennal article XIV, ventral. Arrows indicate apical sensillum; arrowheads indicate club-like sensillum. Scale bars: 0.1 mm (A, B); 0.05 mm (C, D).
Mandible
(Fig.
First maxillae
(Fig.
Second maxillae
(Fig.
Forcipular segment
(Fig.
Nannarrup innuptus sp. nov. A, B paratype (TS20210411-05) C, D holotype (TS20210503-09) E, F paratype (TS20210411-04). A anterior part of body, dorsal B anterior part of body, ventral C forcipular segment, dorsal D forcipular segment, ventral E denticles on forcipule, dorsal F poison calyx, dorsal. Arrow indicates tubercle on tibia. Circle indicates poison calyx. Scale bars: 0.5 mm (A, B); 0.3 mm (C, D); 0.05 mm (E, F).
Leg-bearing segments
(Figs
Ultimate leg-bearing segment
(Fig.
Female postpedal segments
(Fig.
Male postpedal segments unknown (male unknown).
Honshu, Shikoku and Kyushu.
In pairwise comparisons, N. innuptus sp. nov. can be distinguished from N. hoffmani by the presence of a well-developed denticle on the trochanteroprefemur (width: length = 1:1.3–1.6) and a well-pigmented denticle on the tarsungulum. In addition, N. innuptus sp. nov. is also distinguishable from N. hoffmani by the presence of a tubercle on the forcipular tibia, but this tubercle is not always visible. No male has been found so far.
Holotype 1 adult male, Hinata, Isehara-shi, Kanagawa prefecture, Japan (35°26.07'N, 139°14.75'E), 17 February 2021, coll. Sho Tsukamoto (labeled as TS20210217-04), deposited at the Collection of Myriapoda, Department of Zoology, NSMT. Paratype 1 subadult male, Hinata, Isehara-shi, Kanagawa prefecture, Japan (35°26.07'N, 139°14.75'E), 25 July 2021, coll. Sho Tsukamoto (labeled as TS20210725-02), deposited at MNHAH.
The species name is derived from the name of Japanese mountain, namely Mt. Oyama. The word was further Latinized by adding the Latin masculine adjective suffix -ensis, to form oyamensis. The last “a” of Oyama and the first “e” of -ensis are merged into “e.” Examined specimens were collected from Mt. Oyama, an object of the mountain worship.
Clypeus without smooth or weakly areolate areas along the posterior part of the paraclypeal sutures; forcipular trochantroprefemur with a large denticle (longer than wide); tarsungulum with a well-pigmented denticle; metasternite of ultimate leg-bearing segment wider than long.
General features : Body 8.6 mm long (holotype), gradually attenuate posterior, almost uniformly very pale yellow, with head and forcipular segment pale ocher.
Cephalic capsule
(Fig.
Antenna
(Fig.
Mandible
(Fig.
First maxillae
(Fig.
Second maxillae
(Fig.
Forcipular segment
(Fig.
Leg-bearing segments
(Fig.
Ultimate leg-bearing segment
(Fig.
Nannarrup oyamensis sp. nov. A, B holotype (TS20210217-04) C, D paratype (TS20210725-02). A ultimate leg-bearing segment and male postpedal segment, dorsal B ultimate leg-bearing segment and male postpedal segment, ventral C right ultimate leg, dorsal D right ultimate leg, ventral. Scale bars: 0.1 mm.
Male postpedal segments
(Fig.
Female postpedal segments unknown (female unknown).
Only known from Mt. Oyama, located in Isehara-shi, Kanagawa prefecture.
Nannarrup oyamensis sp. nov. is distinguishable from the two congeners by the absence of smooth or weakly areolate areas along the posterior part of the paraclypeal sutures. Specifically, N. oyamensis sp. nov. can be clearly distinguished from N. hoffmani by the presence of a well-developed denticle on the trochanteroprefemur (width: length = 1:1.3) and the absence of smooth or weakly areolate areas along the posterior part of the paraclypeal sutures. Furthermore, N. oyamensis sp. nov. can be distinguished from N. innuptus sp. nov. by the absence of a pair of smooth or weakly areolate areas along the posterior part of the paraclypeal sutures (see Table
All three morphospecies (including N. hoffmani) were determined to be similar to a certain extent. Nevertheless, each morphospecies was distinguished from the other two morphospecies on the basis of the following characteristics: presence or absence of a pair of smooth or weakly areolate areas along the posterior part of the paraclypeal sutures, the width-to-length ratio of the denticle of trochanteroprefemur, the pigmentation of the denticle on the tarsungulum. Table
The maximum internal genetic divergence in the COI, 16S, and 28S sequences within each morphospecies was considerably smaller than the minimum divergence in the COI, 16S, and 28S sequences between each pair of the morphospecies, that is, the DNA barcoding gap was evident.
The presence of a DNA barcoding gap (especially in the nuclear 28S) suggests that N. sp. 2 forms an independent gene pool that is reproductively isolated from N. sp. 1. Together, the morphological and molecular evidence suggests that the three morphospecies are distinct species and that N. sp. 1 and N. sp. 2 are two novel species; they are described under the section “Taxonomic account” as Nannarrup innuptus sp. nov. and Nannarrup oyamensis sp. nov., respectively.
All examined Nannarrup specimens were collected from Honshu, Shikoku, and Kyushu, but the collectors (ST, KE, and collaborators) did not find Nannarrup in the Ryukyu Archipelago despite intensive and repetitive field surveys. Furthermore,
According to the results of DNA barcoding based on COI, 16S, and 28S sequences, N. innuptus sp. nov. does not show a remarkable genetic structure that is consistent with the geography of Japan and physical distances among the collection sites in the present study. Nevertheless, considering this intraspecific genetic diversity, it is reasonable to assume that N. innuptus sp. nov. is not a species recently introduced by human activities but a native species in Japan. The reason for such a low genetic diversity and no geographic structuring of diversity in mitochondrial genes remains unclear at present, but we propose the following two hypotheses to explain this finding: 1) the rate of evolution of mitochondrial genes is considerably lower than that in other centipedes, and 2) the establishment of N. innuptus sp. nov. as an independent species (either within the Japanese archipelago or following migration from the Asian continent) is geologically relatively recent. This question may be answered by examining sufficient specimens of other congeners (e.g., N. oyamensis sp. nov.) from East Asia including Japan and estimating the species divergence time by including other congeners and even genera belonging to Mecistocephalidae in Asia.
Remarkably, all 71 adult and subadult specimens of N. innuptus sp. nov. examined in this study were females without exception. Furthermore, because different collectors (four) did the specimen collections, in different seasons (March–November), and in different habitats (forest, urban green space, and riverbed), the presence of any sampling bias that may have distorted the sex ratio is unlikely. Although there is no direct evidence, the abovementioned indirect evidence shows the possibility of parthenogenesis of N. innuptus sp. nov.
To date, a large part of the northern and eastern European population of Geophilus proximus C.L. Koch, 1847, the European population of Tygarrup javanicus Attems, 1929, and Schendyla dentata (Brölemann & Ribaut, 1911) have been discussed about their parthenogenesis (
We are grateful to Ms Mayu Susukida (Tokyo Metropolitan University) and Mr Joe Kutsukake (Tokyo Metropolitan University) for collecting and providing Nannarrup specimens. We also would like to thank Dr Namiki Kikuchi (Tokyo Metropolitan University) for providing a high-quality photograph of the habitus of Nannarrup innuptus sp. nov., and Dr Keisuke Kawano (The Firefly Museum of Toyota Town) for guiding in the forests in Yamaguchi prefecture. We sincerely thank two reviewers for providing valuable comments which significantly improved this paper. We would like to thank Enago (www.enago.jp) for the English language review. This research was funded by the following foundations and societies: Asahi Glass Foundation [Leader: Katsuyuki Eguchi; FY2017–FY2020, and Leader: Satoshi Shimano; FY2020–FY2023] and Tokyo Metropolitan University Fund for TMU Strategic Research [Leader: Prof. Noriaki Murakami; FY2020–FY2022]. This research was also funded by JSPS KAKENHI Grant Numbers 17K07271, 18K06392 for SS.