Research Article |
Corresponding author: Luisa Fernanda Vasquez-Valverde ( luisafvv@vt.edu ) Academic editor: Dragan Antić
© 2022 Luisa Fernanda Vasquez-Valverde, Paul E. Marek.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Vasquez-Valverde LF, Marek PE (2022) Phylogenetic review of the millipede genus Cherokia Chamberlin, 1949 (Polydesmida, Xystodesmidae). ZooKeys 1106: 141-163. https://doi.org/10.3897/zookeys.1106.81386
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The millipede genus Cherokia Chamberlin, 1949 is a monospecific taxon, with the type species Cherokia georgiana (Bollman, 1889). The last revision of the genus was made by
Citizen science, DNA barcoding, morphology, phylogenetics, subspecies
The family Xystodesmidae (Polydesmida) includes 539 species with a center of diversity concentrated in the Appalachian Mountains (
Cherokia georgiana (Bollman, 1889), the wrinkled flat-backed millipede. Dorsal view of the whole body of specimen MPE04539 (Male, GA – White Co.) deposited in the Virginia Tech Insect Collection (VTEC). The image shows the more common coloration for the species and the prominent wrinkles of the cuticle.
Prior to
After 1960, some authors have indirectly mentioned Cherokia in tribal revisions (
Here we used natural history collections in combination with new material sampled from nearly 200 locations within the range of Cherokia. These new samples, specially prepared for preservation of DNA, provided the basis to estimate an evolutionary history using molecular phylogenetics and address the status of the three subspecies within Cherokia georgiana.
Specimens of the genus Cherokia preserved in the Virginia Tech Insect Collection were selected based on the availability to score both morphological and molecular characters from them. Individual live millipede specimens or their tissues were fixed in either 100% ethanol or Qiagen RNAlater thereby preserving DNA and other genetic material. Whole body specimens (minus tissue preserved for DNA) were then preserved in 70% isopropanol for subsequent morphological evaluation.
New samples were needed from some localities that had not previously been sampled; these localities were in the periphery of the known distribution of Cherokia or in areas where DNA-grade specimens were unavailable. A season of fieldwork was planned for the Summer 2020, however, due to the SARS-CoV-2/COVID-19 pandemic, and state restrictions, travel was not feasible. In response, and with the objective of obtaining these required samples, a citizen science project was developed. This enabled the general public to participate in the collection of millipedes of the genus Cherokia, and to learn about biodiversity.
For the citizen science project, collection kits and information pamphlets were designed with step-by-step instructions and other information for the public to obtain samples in an accurate and lawful way (Fig.
Preserved tissue (legs or head) from each individual was used for DNA extraction with a Qiagen DNeasy kit. The DNA obtained from the extraction was amplified via polymerase chain reaction (PCR) for seven gene regions: cytochrome oxidase subunit I (COI), small subunit RNA (12S), tRNA-Valine (tRNA-Val), large subunit RNA (16S), elongation factor-alpha (EF1α), RNA polymerase II largest subunit (RNAPol2), and F-box (fBox). The mitochondrial 12S, tRNA-Val, and 16S regions were amplified as a single contiguous stretch. Amplification of DNA was carried out according to
The sequences were analyzed in Mesquite (Version 3.61) (
To determine whether the subspecies of Cherokia georgiana represent distinct genetic groups, Automatic Barcode Gap Discovery (ABGD) species delimitation analysis was used. This method uses an alignment of sequences of a single locus (COI) to make a pairwise distance matrix and determine if a barcode gap exists. A barcode gap is observed when the intraspecific distance among unique sequences is smaller than the interspecific distance (
To infer a detailed geographical range of the genus Cherokia, records in the literature, natural history collections, and new collections from the citizen science project were included. All the localities of specimens of Cherokia documented in
For the analysis of morphological features, the traits described in
Cherokia georgiana exhibits a considerable diversity in coloration patterns throughout its geographical distribution. To evaluate this variation, pictures of the species taken from the specimens selected for the analysis and those observed on iNaturalist (available from https://www.inaturalist.org; accessed May, 2020) were included. Before including pictures from iNaturalist, identifications of the observations of Cherokia were confirmed by the authors (accessed on 18 May 2020). Afterwards the pictures were coded based on selection of one of three hue (red, orange, and yellow) and pattern groups (bimaculate, trimaculate, and striped), and scored. These pattern codes were then mapped onto the distribution of Cherokia to test if there is a correspondence with geographical areas and phylogenetic relationships.
The citizen science campaign on social media received more than 100 responses from a Facebook and Twitter post. This resulted in 68 people who completed a Google form expressing their interest to participate in the project. Fifty people were then selected based on their location and proximity to areas previously not surveyed. Due to the limited number of kits available, sampling efforts were focused on the collection of millipedes in targeted localities in Georgia, Alabama and Tennessee. A total of 41 kits (Fig.
A total of 106 individuals from the genus Cherokia were included in the molecular phylogenetic analysis: 74 males, 31 females and one juvenile. Of these, 88% of the selected samples were previously deposited at the VTEC, and the remaining 12% corresponded to new samples obtained from the citizen science project.
The amplification and sequencing of DNA for the loci, COI, 12S, tRNA-Val and 16S, had a high rate of success, and only one specimen did not amplify (Suppl. material
The multiple sequence alignment in MAFFT and inference of nucleotide evolution models in ModelFinder resulted in a 3865 bp concatenated matrix divided into six partitions and composed of 142 bp of 12S (TIM+F+G4 nucleotide evolution model), 82 bp of tRNA-Val (TIM+F+G4), 1081 bp of 16S (TIM+F+G4), 600 bp of COI (pos1 TN+I+G4, pos 2 TIM3+F+R2 and pos 3 TIM3+F+G4), 585 bp of EF1α (pos 1 & 2 TN+I+G4, pos 3 TIM3+F+R2 and intron GTR+F+I+G4), 978 bp of RNAPol2 (pos 1, 2, 3 & intron 1 TN+F+R2 and intron 2 TIM+F+G4), and 397 bp of fBox (pos 1 & 2 TN+I+G4 and pos 3 TIM3+F+R2). Of the 3865 nucleotide characters, 2726 corresponded to constant sites, 738 were parsimony-informative, and 401 were singleton sites. The average uncorrected pairwise distance for COI sequences between individuals from the same locality was 0.00470 (max. = 0.01644, min. = 0, σ = 0.005), and in total 0.07704 (max. = 0.12105, min. = 0, σ = 0.02742). The maximum uncorrected pairwise distance (COI) between Cherokia and Pleuroloma was 0.14740. The estimated phylogeny for Cherokia using the seven loci and the above-mentioned partitions and models is shown in Fig.
The ABGD analysis included high-quality COI sequences for 105 specimens of Cherokia and excluded the sequences from the outgroup taxon Pleuroloma. The analysis was carried out on the ABGD web server using the Jukes-Cantor (JC69) substitution model and a relative gap width of 1.5X. The results of this analysis showed that a barcode gap does not exist in the COI sequences of Cherokia (Fig.
A total of 201 reports were digitized and georeferenced from
All of the adult individuals used for the phylogeny were included in the morphological analysis. The juvenile (Fig.
Once all the measurements were log-transformed, a linear regression analyzing the correlation between elevation and body dimensions were conducted for each of the respective measurements (Fig.
The position of the scapulora as described in
Variation in the paranota shape in Cherokia Chamberlin, 1949. Images of the 12th body ring of males (VTEC) showing sinuate paranota A SPC000060 (AL-MAR) B MPE01272 (AL-MAD) C MPE01336 (AL-WIN) or straight paranota D MPE02360 (GA-FLO) E MPE01308 (GA-DAW) F MPE01822 (GA-RAB). Blue and red lines denote the differences between the paranota shape.
The coloration analysis of Cherokia included a total of 124 images of individuals identified as Cherokia on iNaturalist. The identifications of Cherokia observations on iNaturalist were confirmed by the authors based on the diagnosis below. The pictures were coded using the three colors (red, orange and yellow), and three patterns (bimaculate, trimaculate, and striped). Most of the individuals exhibited only one of the colors, and a smaller proportion of them exhibited two. The color white was only observed present while in combination with another color (i.e., white and orange), while the other colors were present by themselves or with another.
In the bimaculate pattern, a spot of color was present laterally on each paranota (there are two paranota per ring) with the center lacking pigmentation (Fig.
Coloration patterns observed in Cherokia Chamberlin, 1949. Bimaculate A MPE01512 (NC-MAC) B MPE04252 (GA-JAC) C MPE02181 (TN-MOR), trimaculate D MPE01508 (TN-SEV) E MPE01225 (TN-VBU) F MPE01227 (TN-VBU), and striped G MPE00505 (NC-HIG) H MPE04515 (SC-OCO) I MPE00501 (NC-HIG). All specimens are from the VTEC. Scale bars 10 mm.
Family Xystodesmidae Cook, 1895
Subfamily Rhysodesminae Brolemann, 1916
Cherokia georgiana (Bollman, 1889)
Fontaria georgiana Bollman, 1889a: 344. MALE HT (United States National Museum, USNM). United States: Georgia, Bibb County.
Fontaria tallulah Bollman, 1889a: 344. FEMALE HT (USNM). United States: Georgia, Habersham County. Synonymized by Hoffman, 1950b: 23.
Mimuloria furcifer Chamberlin, 1940a: 282, fig. 1. MALE HT (USNM). United States: North Carolina, Buncombe County. Synonymized by Hoffman, 1950b: 23.
Mimuloria georgiana
–
Dynoria parvior Chamberlin, 1947: 10, fig. 4. MALE HT (USNM). United States: Georgia, Union County. Synonymized by Hoffman, 1950b: 23.
Cherokia georgiana
–
Cherokia georgiana georgiana
Mimuloria ducilla Chamberlin, 1939: 7, fig. 12. MALE HT (USNM). United States: North Carolina, Jackson County.
Mimuloria georgiana (nec Bollman, 1889) – sensu Loomis, 1943: 402.
Cherokia georgiana ducilla
Cherokia georgiana latassa Hoffman, 1960: 257, figs 3a, c, 4a–e, 5c, d, 7. MALE HT (USNM). United States: Tennessee, Warren County. syn. nov.
For a complete taxonomic listing, see
Adults in the genus Cherokia are distinct from other rhysodesmine genera based on the following combination of characters: Body rings: dorsal surface of the metazonites with a noticeably wrinkly texture. Paranota horizontal and wide, with little downwards curvature, making the body appear flatter than other rhysodesmines. Gonopods: Telopodite sublinear in shape (Fig.
The previously reported geographical range of Cherokia sensu
Based on the molecular phylogeny, Cherokia is a monophyletic taxon (Fig.
The morphological characters evaluated by
The results of the ABGD analysis showed a congruent pattern where genetic distances are continuously distributed and no barcode gap exists (Fig.
The position of the scapulora (sensu
The geographical distribution shows that the individuals with sinuate paranota generally tend to be located in the western part of the Appalachian region, while the individuals with a straight paranota are located in the eastern part. This separation appears to correspond to the Tennessee River Valley and the geological barrier that it represents for the genus, and other co-distributed taxa (e.g. Nannaria wilsoni species group;
The coloration patterns were plotted on a map to assess concordance with the geographical distribution. Fig.
The use of citizen science as a tool for obtaining and analyzing data has been successfully demonstrated by various research groups. The Cornell Lab of Ornithology, for example, has developed multiple projects involving amateur ornithologists and the general public for around two decades. Data obtained from those initiatives have been published in several peer-reviewed research papers in various journals (
Morphological characters showed clinal variation and a direct relationship with geographical distribution and elevation, but not with the phylogeny. Coloration was highly variable and did not accord with neither geography nor phylogeny. The phylogeny recovered Cherokia as a monophyletic taxon, and the ABGD species delimitation test showed no barcode gap supporting the existence of multiple species. The molecular and morphological evidence showed that Cherokia is a monospecific genus with the sole species Cherokia georgiana being geographically widespread and highly variable in its morphology.
This research was supported by a National Science Foundation grant to P. Marek (Division of Environmental Biology, Systematics and Biodiversity Sciences # 1916368). Derek Hennen and Jackson Means helped confirm identifications of Cherokia observations on iNaturalist. We thank those who provided specimens: Roger Birkhead, Sawyer Birkhead, Chris Eaton, Barbara Graham, Christina Fizer, Sherrie White, Jessica Clay, Tracey Muise and Raegan Rainey. Robin Andrews and Bill Shear served on FVV’s thesis committee, and provided suggestions for earlier versions of the manuscript. Nesrine Akkari, Weixin Liu and Dragan Antić were reviewers who provided comments on previous versions of this paper.
Specimens used in the phylogenetic analysis
Data type: List of taxa and NCBI accession numbers
Explanation note: List of specimens used in the phylogenetic analysis, with their localities and NCBI accession numbers.
Cherokia georgiana specimens examined
Data type: List of taxa
Explanation note: List of Cherokia georgiana specimens examined from literature and natural collections.
Individual gen trees
Data type: Phylogenetic
Explanation note: Individual gene phylogenies of Cherokia georgiana.