Research Article |
Corresponding author: Sota Komeda ( d196208@hiroshima-u.ac.jp ) Academic editor: Danielle Defaye
© 2021 Sota Komeda, Kenta Adachi, Susumu Ohtsuka.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Komeda S, Adachi K, Ohtsuka S (2021) A new species of Pilarella (Copepoda, Calanoida, Arietellidae) from the hyperbenthic layer of Japan, with a molecular phylogenetic analysis of some representative genera of the Arietellidae. ZooKeys 1038: 179-194. https://doi.org/10.3897/zookeys.1038.63170
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A new species of the continental shelf hyperbenthic genus Pilarella is described, the first from the Indo-Pacific. This is the second species of Pilarella known, and the first description of a male in the genus. The new species is easily distinguished from other species of Pilarella (P. longicornis) based on: (1) short caudal rami, approximately 1.5 times longer than wide; (2) 2 setae on the mandibular endopod; (3) 6 setae on the maxillular coxal epipodite; and (4) in the female, a short left antennule reaching the posterior border of the genital double-somite. The new diagnosis of Pilarella differs from Metacalanus in the separation of ancestral segments IX–XII and XIV–XV of the antennule, and the presence of 5–6 setae on the maxillular praecoxal arthrite. Pilarella is also separated from Metacalanalis based on the absence of a seta on the third ancestral segment of the antennary exopod, the symmetry of legs 1–3, the presence of a medial basal seta on the female leg 5, and 2 lateral exopodal spines on the female leg 5. A molecular phylogenetic analysis of some representative genera of the family Arietellidae, including the present new species, recovers two arietellid clades (Metacalanus- and Arietellus-clades) as in previous studies. Dichotomous keys for the genera of Arietellidae and the species of Pilarella are included.
Arietelloidea, calanoid copepods, colonization, hyperbenthos, molecular phylogeny, Nansei Islands
The calanoid family Arietellidae is widely distributed, occurring from littoral caves to the shallow water pelagic realm and deep-sea hyperbenthic layers (
Recently, molecular markers such as ribosomal and mitochondrial DNA sequences have been used as tools for the exploration of phylogenetic relationships among various calanoid taxa. However, only data on one arietellid species (Paraugaptilus buchani) is available in the DDBJ/EMBL/GenBank databases, and no molecular phylogenetic analysis has been conducted yet among arietellid genera.
This study describes a new species of Pilarella collected off the Amami Oshima Island, Kagoshima Prefecture, Japan. This is the second species of Pilarella and the first record of this genus in the Indo-Pacific. The male of Pilarella is described for the first time. Moreover, we explore the phylogenetic relationships among seven arietellid species based on 28S ribosomal DNA. Furthermore, new dichotomous keys to arietellid genera and species of Pilarella are provided.
The arietellid copepods used in this study were collected off the Nansei Islands in southwest Japan in May 2018 and 2019 by the training and research vessel “Toyoshio-Maru” of Hiroshima University. Sampling dates, localities, and collection gears (cf.
Species | Accession number | Sampling gear | Longitude / Latitude | Depth (m) | Date | Time |
---|---|---|---|---|---|---|
Arietellus setosus Giesbrecht, 1892 | LC510290 | ORI net | 29°50.011'N, 130°55.999'E | 0–1000 | May 22, 2019 | 1635–1912 |
Arietellus simplex Sars, 1905 | LC510291 | ORI net | 29°50.011'N, 130°55.999'E | 0–1000 | May 22, 2019 | 1635–1912 |
Metacalanus sp. | LC516702 | Conical hand net | 26°23'N, 127°67'E | <10 | May 25, 2019 | Night |
Paramisophria sp. | LC510294 | Dredge | 26°14.448'N, 127°31.532'E | 53 | May 25, 2019 | 0909–1020 |
Paraugaptilus buchani Wolfenden, 1904 | LC510293 | ORI net | 30°48.106'N, 131°32.072'E | 0–1000 | May 15, 2018 | 0941–1205 |
Pilarella compacta sp. nov. | LC510295 | Sledge net | 28°14.023'N, 129°39.559'E | 291–294 | May 18, 2018 | 0816–0826 |
Sarsarietellus orientalis Soh, Moon, Ohtsuka, Pae & Jeong, 2013 | LC510292 | Beam trawl nets | 28°22.422'N, 129°15.144'E | 315–316 | May 23, 2019 | 1155–1255 |
Specimens of the new species of Pilarella were dissected under a stereomicroscope (SZX7, Olympus), and their appendages and urosome cleared in lactophenol. Illustrations were drawn under a biological microscope (BX53, Olympus) with a drawing tube.
Type specimens (NMST-Cr29010–29012) were deposited at the National Museum of Nature and Science (Tsukuba, Ibaraki Prefecture, Japan). The morphological terminology mainly follows
Total DNA of samples, except of Metacalanus sp., was extracted from the whole body using DNeasy Blood & Tissue kits (Qiagen, Venlo, Netherlands). Total DNA extraction from a small sample of Metacalanus sp. was performed using the whole body according to the method described by
Seven sequences for 28S (Accession numbers: LC510290–LC510295, LC516702) obtained in this study were deposited in the DNA Data Bank of Japan (DDBJ) and GenBank. Paraheterorhabdus compactus (Sars, 1900) (Accession number: HM997026) was used as the outgroup taxon. Sequence alignment was performed using CLUSTAL W (
Family Arietellidae Sars, 1901
Female. Cephalosome separated from first pediger. Fourth and fifth pedigers completely fused. Rostrum produced ventrally, with pair of frontal filaments disposed distally. Genital double-somite symmetrical with paired seminal receptacles and gonopores located ventrolaterally. Antennules asymmetrical, 21-segmented, ancestral segments I-IV and XXIV-XXVIII fused. Left antennule exceeding fifth pediger, approximately 1.5 times longer than right counterpart. Antenna with unarmed coxa; exopod 5-segmented, with ancestral segments II-IV, V-VII and IX-X fused, setal formula as 0, 0-0-1, 1-1-1, 1, 0-2. Mandible with row of setules on dorsal margin of gnathobase; endopod rudimentary, unsegmented, with 2 setae. Maxillule with 5–6 spines on praecoxal arthrite; coxal endite with 1 seta; coxal epipodite with 5–6 setae; proximal and distal basal endites without seta; endopod unsegmented with 2 setae; exopod with 3 setae. Maxilla with 2 setae on all praecoxal and coxal endites; basis having 1 heavily-chitinized spine [Maxilla with 2 setae on all praecoxal, coxal and basal endites; first endopodal segment having 1 heavily-chitinized spine (the homology by
Setal formula of legs 1–4 of Pilarella compacta sp. nov. Roman numerals: spines, Arabic numerals: setae.
Exopod | Endopod | |||||||
---|---|---|---|---|---|---|---|---|
Coxa | Basis | 1 | 2 | 3 | 1 | 2 | 3 | |
Leg 1 | 0–1 | 1–1 | I-1; | I-1; | 0, I, 5 | 0–1; | 0–2; | 1, 2, 2 |
Leg 2 | 0–1 | 0–0 | I-1; | I-1; | III, I, 5 | 0–1; | 0–2; | 2, 2, 4 |
Leg 3 | 0–1 | 0–0 | I-1; | I-1; | III, I, 5 | 0–1; | 0–2; | 2, 2, 4 |
Leg 4 | 0–1 | 1–0 | I-1; | I-1; | III, I, 5 | 0–1; | 0–2; | 2, 2, 3 |
Male. Body, antenna, mandible, maxillule, maxilla, maxilliped, and legs 1–4 similar to female counterparts. Antennules asymmetrical; right antennule 21-segmented, ancestral segments I–IV fused, XXIV–XXVIII partly fused, I–VIII with long tape-like aesthetascs. Leg 5 uniramous, 5-segmented; basis with lateral seta; exopod 3-segmented, proximal 2 segments with 1 lateral spine, distal segment with 2 terminal setae.
Pilarella longicornis Alvarez, 1985 (by monotypy). Other species: Pilarella compacta sp. nov., described herein.
The diagnosis of Metacalanus from
Holotype : ♀ 1.97 mm preserved in vial (NMST-Cr29010). Allotype: ♂ 1.69 mm, appendages mounted on glass slide, body in vial (NMST-Cr29011). Paratype: ♀ 2.01 mm, appendages mounted on glass slide, body in vial (NMST-Cr29012).
Adult female. Body (Fig.
Pilarella compacta sp. nov., adult female A lateral habitus (holotype) B dorsal habitus (holotype) C rostrum, ventral view (paratype) D rostrum, labrum and left paragnath, lateral view (paratype) E genital double-somite, ventral view (paratype) F urosome, ventral view (paratype) G urosome, lateral view (paratype) H right antennule (paratype) I left antennule (paratype). Scale bars: 0.1 mm.
Antennules
(Fig.
Antenna
(Fig.
Mandible
(Fig.
Maxillule
(Fig.
Maxilla
(Fig.
Maxilliped
(Fig.
Seta and spine formula of legs 1–4 as shown in Table
Leg 5
(Fig.
Adult male. Body (Fig.
Antennules
(Fig.
Antenna, mandible, maxillule, maxilla, maxilliped and legs 1–4 similar to those of female.
Leg 5
(Fig.
The specific name of the new species is derived from the Latin adjective compactus meaning “stocky” to denote the habitus of the present new species.
The present new species falls within the diagnosis of the monotypic Pilarella (
Pilarella compacta sp. nov. differs from P. longicornis Alvarez, 1985 as follows: (1) the body is more compact (vs. more slender in P. longicornis); (2) the left antennule of the female is short, and reaches the posterior border of genital double-somite (vs. reaching the posterior margin of caudal rami in P. longicornis); (3) the caudal rami are short, approximately 1.5 times longer than wide (vs. long, 4.3 longer than wide in P. longicornis), (4) the mandibular endopod has 2 setae (vs. 1 in P. longicornis), (5) the coxal epipodite of maxillule has 6 setae (vs. 5 in P. longicornis), (6) there is a basal lateral seta on leg 4 (vs. seta absent in P. longicornis).
The Maximum Likelihood tree based on 16 species of the superfamily Arietelloidea is shown in Figure
Maximum Likelihood tree based on partial 28S nuclear ribosomal DNA sequences of the superfamily Arietelloidea. Left and right Arabic numerals on nodes indicate bootstrap values and posterior probabilities, respectively. Scale bar shows nucleotide changes per site. Asterisks indicate arietellid species.
The homology of the maxilla and maxilliped by
1 | Maxillule located anterior to maxilla; maxillular coxal epipodite with 5–9 setae | 2 |
– | Maxillule located posterior to maxilla and maxilliped; maxillular coxal epipodite without setae | Griceus Ferrari & Markhaseva, 2000 |
2 | Third exopodal segment of leg 1 with 1 outer spine | 3 |
– | Third exopodal segment of leg 1 with 2 outer spines | 6 |
3 | Maxillular praecoxal arthrite with 5–6 elements | 4 |
– | Maxillular praecoxal arthrite with 0–2 elements | Metacalanus Cleve, 1901 |
4 | Distal endite on maxillary praecoxa with 2 setae (coxal endite on maxilla with 2 setae) | 5 |
– | Distal endite on maxillary praecoxa with 1 seta (coxal endite on maxilla with 1 seta) | Scutogerulus Bradford, 1969 |
5 | Third ancestral segment on antennary exopod without seta; legs 1–4 symmetrical; female leg 5 with 1 basal medial seta, 1 exopodal lateral spine and 2 exopodal distal spines | Pilarella Alvarez, 1985 |
– | Third ancestral segment on antennary exopod with seta; legs 1–4 asymmetrical; female leg 5 with no basal medial seta, 2 exopodal lateral spines and 2 exopodal distal spines | Metacalanalis Ohtsuka, Nishida & Machida, 2005 |
6 | Maxillular endopod absent or unsegmented with 0–3 setae | 7 |
– | Maxillular endopod 3-segmented with 6 setae | Rhapidophorus Edwards, 1891 |
7 | Maxillule with 6 setae on coxal epipodite | 8 |
– | Maxillule with 8–9 setae on coxal epipodite | 9 |
8 | Antennary exopod indistinctly 10-segmented; maxillule with strongly serrate spines on coxal arthrite; innermost seta on fifth endopodal segment of maxilliped long; outermost seta on sixth endopodal segment of maxilliped not reduced (innermost seta on fourth endopodal segment of maxilliped long; outermost seta on fifth endopodal segment of maxilliped not reduced) | Crassarietellus Ohtsuka, Boxshall & Roe, 1994 |
– | Antennary exopod indistinctly 8-segmented; maxillule with weakly serrate spines on coxal arthrite; innermost seta on fifth endopodal segment of maxilliped short; outermost seta on sixth endopod segment of maxilliped reduced (innermost seta on fourth endopodal segment of maxilliped short; outermost seta on fifth endopod segment of maxilliped reduced) | Campaneria Ohtsuka, Boxshall & Roe, 1994 |
9 | Innermost seta on fourth and fifth endopodal segments of maxilliped ordinary (Innermost seta on third and fourth endopodal segments of maxilliped ordinary) | 10 |
– | Innermost seta on fourth and fifth endopodal segments of maxilliped vestigial (Innermost seta on third and fourth endopodal segments of maxilliped vestigial) | Arietellus Giesbrecht, 1892 |
10 | Ancestral segment X on antennary exopod with 3 elements | 11 |
– | Ancestral segment X on antennary exopod unarmed | Paraugaptilus Wolfenden, 1904 |
11 | Leg 4 without inner coxal seta; second segment of antennary endopod with 3 inner setae midway | 12 |
– | Leg 4 with inner coxal seta; second segment of antennary endopod with 2 inner setae midway | Paraugaptiloides Ohtsuka, Boxshall & Roe, 1994 |
12 | Antennulary segments XXV and XXVI fused; maxillary basal spine without spinules (spine on first endopodal segment of maxilla without spinules); basal inner process on female leg 5 with 0–2 setae | 13 |
– | Antennulary segments XXV and XXVI separated; maxillary basal spine with spinules (spine on first endopodal segment of maxilla with spinules); basal inner process on female leg 5 with 4 setae | Sarsarietellus Campaner, 1984 |
13 | Female genital double-somite with single copulatory pore; third ancestral segment on exopod of female leg 5 with at most 3 elements and 1 process | Paramisophria T. Scott, 1897 |
– | Female genital double-somite with paired copulatory pores; third ancestral segment on exopod of female leg 5 with 1 outer, 1 subterminal and 2 terminal elements; male unknown | Protoparamisophria Ohtsuka, Nishida & Machida, 2005 |
1 | Caudal rami approximately 1.5 times longer than wide; mandibular endopod with 2 setae; maxillular coxal epipodite with 6 setae; female left antennule reaching posterior border of genital double-somite | P. compacta sp. nov. |
– | Caudal rami approximately 4 times longer than wide; mandibular endopod with 1 seta; maxillular coxal epipodite with 5 setae; female left antennule reaching posterior edge of caudal rami | P. longicornis Alvarez, 1985 |
This study is the first report of a male Pilarella. The male antennule of Pilarella compacta sp. nov. has long, tape-like aesthetascs on the basal part. Similar antennules were found in a male Metacalanus acutioperculum and Metacalanus adriaticus (
As regards the molecular analysis, clades I (Metacalanus, Paramisophria, and Pilarella) and II (Arietellus, Paraugaptilus, and Sarsarietellus) in Figure
Hyperbionix, belonging to the Hyperbionychidae, was clustered in clade I and included in the lineage of the Arietellidae (Fig.
In clade II (Arietellus-clade), a comparison of the 28S sequences of Paraugaptilus buchani between the present (material from the western North Pacific) and a previous study (material from the western North Atlantic;
The present study suggests a genetically closer relationship of Arietellus to Sarsarietellus based on high bootstrap value and posterior probability (BP = 87%, PP = 0.997) rather than to Paraugaptilus, as previous studies based on morphological features pointed out (
We would like to express our sincere thanks to the captain and crew of TRV Toyoshio-Maru for their help in field samplings. We are also grateful to Dr M. Sano for offering a sample, and associate Prof. A. Kato and assistant Prof. Y. Kondo for providing laboratory equipment. Part of this study was supported by Sasakawa Scientific Research Grant 2019-4074 from the Japan Science Society (JSS) and Research Grant from Hiroshima Earth Environment Information Center.