Short Communication |
Corresponding author: Uri Omar García-Vázquez ( urigarcia@gmail.com ) Academic editor: Robert Jadin
© 2020 Ricardo Palacios-Aguilar, Uri Omar García-Vázquez.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Palacios-Aguilar R, García-Vázquez UO (2020) A partial molecular phylogeny of Rhadinaea and related genera (Squamata, Dipsadidae) with comments on the generic assignment of Rhadinaea eduardoi. ZooKeys 943: 145-155. https://doi.org/10.3897/zookeys.943.50738
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The genus Rhadinaea is a diverse clade of New World dipsadid snakes, with 22 species arranged in six recognized species groups. The most recently described species, Rhadinaea eduardoi, was described based on a unique specimen collected in the Santa Catarina Juquila municipality in the Sierra Madre del Sur of southern Oaxaca, Mexico. Here, based on a reexamination of the holotype and the results of a phylogenetic analysis of the holotype of Rhadinaea eduardoi and representatives of several genera closely related to Rhadinaea, we reassessed the generic assignment of Rhadinaea eduardoi. In our phylogenetic hypothesis, R. eduardoi was nested within a strongly supported clade of Coniophanes fissidens samples, thus making Rhadinaea paraphyletic with respect to Coniophanes. Additionally, our reexamination of the holotype of Rhadinaea eduardoi revealed that the alleged presence of a subpreocular scale is only true on the right side of the head, and that this scale appears to be a malformed preocular scale; also, a reduction in dorsal scale rows is present; and posterior enlarged maxillary teeth are grooved. Herein we consider that Rhadinaea eduardoi should be placed in the synonymy of Coniophanes fissidens. Consequently, we recognized only five species groups within the genus Rhadinaea.
Coniophanes, generic assignment, synonymization, taxonomy
Dipsadid snakes are the most speciose family of snakes in the Western Hemisphere, with new species descriptions and taxonomic changes frequently modifying the current composition (
To investigate the phylogenetic position of Rhadinaea eduardoi, we sequenced a fragment of the mitochondrial gene coding for Cytochrome b (cyt b) from 13 individuals including the holotype of R. eduardoi (Centro de Investigaciones Biológicas, Universidad Autónoma del Estado de Hidalgo, CIB5457); six samples of the remaining three Mexican species groups of Rhadinaea, including Rhadinaea decorata (Günther, 1858) (3), R. taeniata (Peters, 1863) (2) and R. laureata (Günther, 1868) (1); three samples of Rhadinella
Collection and voucher data for colubrid genetic samples used in this study. Acronyms for herpetological collections follow
No. | Voucher number | Taxa | Locality | GenBank accession number |
---|---|---|---|---|
1 | CAS228960 | Hypsiglena torquata | USA: Texas: Culberson Co. | EU728592 |
2 | KU289798 | Coniophanes fissidens (1) | El Salvador: San Salvador | EF078538 |
3 | RICB521 | Coniophanes fissidens (2) | Mexico: Chiapas: Road to La Encrucijada | MT308775 |
4 | MZFC-HE34715 | Coniophanes fissidens (3) | Mexico: Guerrero: Arenal de Gómez | MT308776 |
5 | RICB260 | Coniophanes fissidens (4) | Mexico: Veracruz: Ocotepec, Los Reyes | MT308777 |
6 | MZFC-HE15533 | Coniophanes imperialis | Mexico: Oaxaca: Santa Maria Chimalapa, Cofradia | MT308778 |
7 | CIB5457 | Rhadinaea eduardoi | Mexico: Oaxaca: El Obispo, Santa Catarina Juquila | MT308779 |
8 | UTAR44718 | Rhadinaea decorata (1) | Guatemala: Huehuetenango: Barillas, Finca Chiblac Buena Vista | MT308780 |
9 | JCSG58 | Rhadinaea decorata (2) | México: Veracruz: Sierra de Otontepec | MT308781 |
10 | OFV1109 | Rhadinaea decorata (3) | Mexico: Oaxaca: San Felipe Jalapa de Díaz | MT308782 |
11 | UOGV2181 | Rhadinaea taeniata (1) | México: Estado de México: Valle de Bravo | MT308787 |
12 | MZFC-HE23859 | Rhadinaea taeniata (2) | Mexico: Oaxaca Santa Maria Yavesia | MT308788 |
13 | MZFC-HE21661 | Rhadinaea laureata | México: Morelos: Huitzilac | MT308785 |
14 | UTAR42473 | Rhadinella stadelmani | Guatemala: Huehuetenango: 3.2 km WSW Patacal | MT308786 |
15 | UTAR42470 | Rhadinella hemsteadae | Guatemala: Quiche: Uspantán, road El Chimel-San Pablo | MT308783 |
16 | UTAR42335 | Rhadinella lachrymans | Guatemala: San Marcos: San Rafael Pie de La Cuesta, Finca America El Vergel | MT308784 |
17 | EBUAP1853 | Tantalophis discolor | México: Oaxaca: Sierra de Monte Flor | EF078589 |
18 | UTAR46905 | Amastridium sapperi | Guatemala: Izabal | GQ334479 |
19 | QCAZ9175 | Synophis zamora | Ecuador: Zamora Chinchipe: Las Orquídeas | KT345376 |
We aligned the obtained sequences using the Muscle algorithm (
To obtain an estimate of genetic distances, we computed pairwise genetic mean distances between Coniophanes, Rhadinaea, and R. eduardoi. We calculated the corrected pairwise genetic distances using the K2P model with MEGA 7 (
We compared the holotype of Rhadinaea eduardoi (CIB5457) with a series of Coniophanes specimens deposited at the Museo de Zoología “Alfonso L. Herrera”, Facultad de Ciencias, Universidad Nacional Autónoma de México (
The final alignment consisted of 1055 bp. The partitions and models that best fit the data were GTR+G for the first and second codon positions, and GTR+G+I for the third codon position. In the Maximum Credibility Tree (Fig.
Genetic distances between species of Rhadinaea and R. eduardoi ranged from 18.9–22.4%, whereas distances between species of Coniophanes and R. eduardoi were much smaller (10.1–11.7%).
Rhadinaea eduardoi was originally assigned to Rhadinaea due to the presence of a small subpreocular scale, the absence of dorsal scale row reduction, supralabial counts, and dorsal color pattern (
Of additional diagnostic importance, the maxillary teeth posterior to the diastema are enlarged and grooved. Among other features, the genus Rhadinaea is characterized by having a small subpreocular inserted between the corners of two supralabials at the antero-ventral edge of the orbit; the same number of dorsal scale rows throughout the body; and not grooved maxillary teeth posterior to the diastema (
The phylogenetic relationships obtained in this study are generally consistent with previous phylogenies that suggested a close relationship between Amastridium, Coniophanes, Rhadinaea, and Tantalophis (
Based on morphology and geographic distribution, Rhadinaea eduardoi is perhaps best considered a junior synonym of C. f. dispersus, a subspecies distributed on the Pacific versant of Mexico west of the Isthmus of Tehuantepec from Jalisco to Oaxaca (sensu Smith, 1941). However, our phylogenetic tree shows a close relationship between the holotype of R. eduardoi and a sample from Veracruz, Mexico (C. f. fissidens) which together are the sister clade of a nearly topotypic sample of C. f. dispersus (Fig.
Following the monographic treatment of the genus Rhadinaea by
Support for laboratory work was provided by grants from Dirección General de Apoyo al Personal Académico, Universidad Nacional Autónoma de México (PAPIIT grant number IN-216619) and Consejo Nacional de Ciencia y Tecnología (CONACyT A1-S-37838), to UOGV, and PAPIIT IN-216218 to O. Flores Villela. We thank A. Ramírez Bautista, V. Mata-Silva and C. Berriozabal-Islas for allowing us to study the R. eduardoi holotype. To Eric N. Smith (UTA), and Adrian Nieto Montes de Oca and O Flores Villela (MZFC) for the donation of several tissue samples. Our gratitude to U. A. García-Sotelo, J. C. Sanchez-García and R. G. Martinez-Fuentes for their help with laboratory work, Adam Clause for reviewing our manuscript for proper use of English. Adrian Nieto, Brett Butler, Robert C. Jadin and an anonymous reviewer for commenting on preliminary versions of this manuscript. RPA thanks CONACyT for a scholarship facilitated by the Posgrado en Ciencias Biológicas, UNAM (CVU 857990).
Table S1. Specimens examined
Data type: Specimens examined
Explanation note: All of the specimens are Coniophanes fissidens from Mexico. Acronyms for herpetological collections follow Sabaj (2016).