Research Article |
Corresponding author: Peng Guo ( ybguop@163.com ) Academic editor: Robert Jadin
© 2020 Ping Wang, Jing Che, Qin Liu, Ke Li, Jie Qiong Jin, Ke Jiang, Lei Shi, Peng Guo.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Wang P, Che J, Liu Q, Li K, Jin JQ, Jiang K, Shi L, Guo P (2020) A revised taxonomy of Asian snail-eating snakes Pareas (Squamata, Pareidae): evidence from morphological comparison and molecular phylogeny. ZooKeys 939: 45-64. https://doi.org/10.3897/zookeys.939.49309
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The Asian snail-eating snakes Pareas is the largest genus of the family Pareidae (formerly Pareatidae), and widely distributed in Southeast Asia. However, potential diversity remains poorly explored due to their highly conserved morphology and incomplete samples. Here, on basis of more extensive sampling, interspecific phylogenetic relationships of the genus Pareas were reconstructed using two mitochondrial fragments (cyt b and ND4) and two nuclear genes (c-mos and Rag1), and multivariate morphometrics conducted for external morphological data. Both Bayesian Inference and Maximum Likelihood analyses consistently showed that the genus Pareas was comprised of two distinct, monophyletic lineages with moderate to low support values. Based on evidences from molecular phylogeny and morphological data, cryptic diversity of this genus was uncovered and two new species were described. In additional, the validity of P. macularius is confirmed.
Molecular, morphology, new species, snakes, southeast Asia, systematics
Pareidae Romer, 1956 is a small family of snakes found largely in Southeast Asia, including the Malay Archipelago, Indo China Peninsula, Bhutan, Bangladesh, India, and China (
Pareas is the largest genus of Asian snail-eating snakes in Pareidae and contains 14 species (
Due to its wide distribution and morphological conservativeness, however, the taxonomy of Pareas remains controversial despite the increasing research (
Here, using an integrated taxonomic methods and more extensive sampling, we reconstruct phylogenetic relationships of Pareas based on mitochondrial and nuclear DNA, and conducted a morphological comparison between species and populations. Our main goal was to clarify interspecific relationships and explore whether cryptic diversity was present within this diverse Asian snail-eating snakes Pareas.
In total, 52 individuals of Pareas representing ten putative species and two unidentified taxa were collected from Southeast Asia through fieldwork or tissue loans from colleagues and museums (Suppl. material
Total DNA was extracted from liver, muscle or skin preserved in 85% ethanol using an OMEGA DNA Kit (Omega Bio-Tek, Inc., Norcross, GA, USA). The sequences of two mitochondrial gene fragments: cytochrome b (cyt b) and NADH dehydrogenase subunit 4 (ND4), as well as two nuclear genes: oocyte maturation factor mos (c-mos) and recombination activating gene 1 (Rag1) were amplified by polymerase chain reaction (PCR) using primers L14910/H16064 (
Phylogenetic analyses were conducted using Bayesian inference (BI) and Maximum Likelihood (ML) methods with Xenodermus javanicus Reinhardt, 1836, Gloydius brevicaudus Stejneger, 1907, and Lycodon rufozonatus Cantor, 1842 selected as outgroups based on previous work (
The BI analyses were performed using MRBAYES 3.2 (
Average divergence estimates were calculated from cyt b or ND4 data among congeners under the K2P model with 1 000 bootstraps using MEGA 7 (
A suite of characters was examined and recorded from 42 voucher specimens (Appendix
A total of 1 767 (1 095 bp from cyt b, 672 bp from ND4) and 1 635 (612 bp from c-mos and 1 023 bp from Rag1) aligned base pairs were obtained from the two mtDNA fragments and two nuclear genes, respectively. Sequences were translated into amino acids to confirm that no pseudogenes had been amplified. Novel sequences generated were deposited in GenBank (Suppl. material
The best-fit model selected by PARTITIONFINDER was three-partition (partitioned by codon positions) for both mtDNA and nDNA datasets (Table
Partition | Model | Partition | Model |
---|---|---|---|
cyt b/ND4, position 1 | TVM+I+G | c-mos/Rag1, position 1 | K81UF+G |
cyt b/ND4, position 2 | GTR+I+G | c-mos/Rag1, position 2 | TVM+I |
cyt b/ND4, position 3 | TIM+G | c-mos, position 3 | TVM+G |
Rag1, position 3 | K81UF+G |
All analyses strongly supported monophyly of Pareidae as a whole and reciprocal monophyly of Aplopeltura (lineage C), Asthenodipsas (lineage D), and Xylophis (lineage E) (Figs
Monophyly of Pareas was supported by either analysis based on mtDNA or nDNA-based BI analysis with moderate support values, and ML analysis based on nDNA data with high support value. Here, Pareas consists of two highly supported lineages (A and B). Lineage B is composed of P. carinatus Boie, 1828, P. nuchalis Boulenger, 1900, and a clade containing four specimens from southern Yunnan, China (Figs
Table
The average genetic divergence estimates (%, Kimura 2-parameter model with gamma correction) among four lineages (A–D) based on Cyt b.
lineage A | lineage B | lineage C | |
---|---|---|---|
lineage A/Pareas | |||
lineage B/Pareas | 21.3 | ||
lineage C/Aplopeltura | 18.4 | 23.0 | |
lineage D/Asthenodipsas | 16.9 | 21.6 | 15.1 |
Within lineage A, genetic divergence between species varied from 6.5% (P. hamptoni and the population from Mengzi, Yunnan; P. iwasakii Maki, 1937 and P. komaii) to 29.5% (P. hamptoni and P. margaritophorus Jan, 1866) based on cyt b and from 8.5% (P. formosensis and the population from Mengzi, Yunnan, P. formosensis and P. hamptoni) to 30% (P. monticola Cantor, 1839 and P. komaii) based on ND4 (Table
Within lineage B, the sublineage containing the four individuals from southern Yunnan demonstrated genetic divergences of 18.5% and 26.5% from P. nuchalis and P. carinatus, respectively, based on the ND4 sequences (Table
The average divergence estimates (%, Kimura 2-parameter model with gamma correction) of Pareas based on cyt b/ND4.
Taxa | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | P. mengziensis sp. nov. | ||||||||||||||
2 | P. hamptoni | 6.5/10.7 | |||||||||||||
3 | P. formosensis | 7.5/8.5 | 7.1/8.5 | ||||||||||||
4 | P. komaii | 16.8/22.4 | 17/25.2 | 14.6/20.4 | |||||||||||
5 | P. iwasakii | 17.4/– | 17.2/– | 16/– | 6.5/– | ||||||||||
6 | P. atayal | 18.5/21.8 | 18.1/22.3 | 17.8/20.8 | 7.8/8.7 | 8/– | |||||||||
7 | P. macularius | 23.5/26.4 | 24.4/26 | 21.9/27 | 19.1/28.5 | 24.4/– | 23.4/26.6 | ||||||||
8 | P. margaritophorus | 28.8/25.5 | 29.5/26.6 | 26.7/26 | 23.8/29.5 | 26.1/– | 26.2/29.4 | 15.5/18.3 | |||||||
9 | P. boulengeri | 23.3/23.2 | 23.2/24 | 19.9/24.6 | 22.7/26.8 | 23.3/– | 24.9/25.2 | 21.6/22.5 | 25.4/23.7 | ||||||
10 | P. chinensis | 23.4/23.6 | 24.7/22.2 | 20.7/22.9 | 21.5/27.3 | 24.3/– | 25.1/29.1 | 20.9/24.7 | 24.6/26.6 | 8.6/10.6 | |||||
11 | P. stanleyi | 28.1/27.7 | 26.1/30.8 | 25.4/27.2 | 21.3/26.4 | 26.1/– | 27/28.3 | 23.8/22.8 | 26.9/29 | 20.9/18.1 | 19.3/22.3 | ||||
12 | P. monticola | 24.4/25.6 | 24.9/23.1 | 22.8/24.1 | 19.6/30 | 22.7/– | 21.7/26.4 | 19.3/24.5 | 26.3/26.2 | 23.7/22.2 | 23.5/22.9 | 24.7/28.3 | |||
13 | P. carinatus | 35.8/32.5 | 37/31.3 | 36.5/28 | 34.5/37.9 | 38.4/– | 34.8/37.1 | 32.4/31.5 | 36.9/35.2 | 34.2/33.3 | 34.5/33.9 | 39.2/36.7 | 33.7/29 | ||
14 | P. menglaensis sp. nov. | 35.8/32.3 | 35.7/30.2 | 36.1/29.3 | 35.2/32 | 38.2/– | 35.2/30.7 | 33.9/31.6 | 38.8/31.5 | 35/29.3 | 39.5/33.9 | 41.2/33.7 | 32.4/27.8 | 18.5/26.5 | |
15 | P. nuchalis | –/33.2 | –/31.5 | –/27.7 | –/33.8 | –/– | –/32.7 | –/32.2 | –/34.2 | –/34 | –/34.8 | –/37.9 | –/28.7 | –/24.8 | –/18.5 |
A total of 30 characters were measured and recorded for 42 specimens representing seven species and two unidentified taxa of Pareas (Appendix
The four specimens collected from Mengla County, Yunnan Province, China, were close to those of P. carinatus, but could be distinguished from the latter by having 11 rows of strongly keeled dorsal scales at mid-body (vs. 3–5 rows feebly keeled) (
Multiple studies on species identification and evolution have relied solely on external morphology, which is misguided in reptiles (
YBU 14124, adult female, collected from Mengla County, Yunnan Province, China, at an elevation of 700 m above sea level in June 2014.
YBU 14141 and YBU 14142, two adult males from the same locality as the holotype but collected in July 2012.
(1) prefrontal separating from orbit; (2) three chin-shield pairs, anterior pair smaller than other two; (3) 9–13 rows of mid dorsal scales keeled; (4) three rows of mid dorsal scales enlarged; (5) single loreal, not bordering orbit; (6) two preoculars, 2–3 suboculars, single postocular; (7) 9–11 temporals (3+3+3, 3+4+4, or 3+4+3); (8) seven supralabials, not bordering orbit; (9) 7–8 infralabials; (10) 3–5 maxillary teeth; (11) cloaca undivided; (12) dorsal scales in 15 rows throughout; (13) 176–177 ventral scales; (14) 65–79 subcaudals, paired.
Male, SVL 472 mm, TL 111 mm, TL/total length 0.24; body elongated; snout distinctly blunt; head distinct from neck. Rostral invisible from above, much deeper than broad; nasals undivided. Internasals subtriangular, wider than long; prefrontals pentagonal, length equal to width, not touching eyes; frontal hexagonal, longer than wide; parietals irregular, longer than wide; one supraocular, longer than diameter of orbit; single loreal, separating from eyes; two preoculars; one postocular; two suboculars; nine or ten temporals, 3+4+3 on left and 3+3+3 on right; seven supralabials, not bordering orbit; seven or eight infralabials, first four in contact with anterior chin-shields; three chin-shield pairs, posterior pair larger than other two; ventral scales 177; cloaca undivided; subcaudals 65, paired; dorsal scales in 15 rows throughout, three median rows enlarged, all keeled except for outer two; five maxillary teeth on both sides.
Dorsal surface nearly uniformly light brown with slightly visible black cross-bands. Head light brown with black dusted spots. Thin postorbital stripe extending from postocular to neck. Belly yellowish white, anterior portion without spots except for lateral edges mottled with almost striped dark brown spots, striped spots gradually becoming invisible backwards. Spots and specks on posterior portion of belly appear and become denser later.
The paratypes agree in most respects with the description of the holotype. A comparison of the most important morphological characters is summarized in Suppl. material
The specific species is named after the type locality, Mengla County, Yunnan, China. We suggest the common name “Mengla Snail-eating Snake” in English and “Mengla Dun-tou-she” (勐腊钝头蛇) in Chinese.
This species is currently known only from the type locality Mengla County, Yunnan, China, with low mountain evergreen broad-leaved forest and a tropical monsoon climate type. It is expected to be found in the surrounding low mountainous areas and in neighboring Laos and Myanmar.
Pareas menglaensis sp. nov. can be distinguished from P. carinatus by 11 rows of dorsal scales strongly keeled at mid-body (vs. 3–5 rows feebly keeled), from P. nuchalis by prefrontal separated from orbit (vs. prefrontal bordering orbit), and from all other species of Pareas by two or three distinct narrow suboculars (vs. one thin elongated subocular).
YBU 14252, adult female, collected from Mengzi, Yunnan Province, China, at an elevation of 1 900 m above sea level in July 2014.
Two adult females (YBU 141251 and YBU 15100) and three adult males (YBU 14253, YBU 14288, and YBU 15114) from the same locality and adjacent regions collected in July 2014 and July 2015.
(1) solid black marking on back of head extending along whole dorsal of body; (2) single preocular; (3) postocular fused with subocular; (4) loreal not bordering orbit; (5) temporals 2+3+3; (6) prefrontal bordering orbit; (7) three rows of mid dorsal scales slightly enlarged; (8) 3–7 rows of mid dorsal scales keeled; (9) 6–7 supralabials; (10) 8–9 infralabials; (11) 6–7 maxillary teeth; (12) cloaca undivided; (13) ventral scales 167–173; (14) subcaudals 54–61, paired.
Female, SVL 426 mm, TL 98 mm, TL/total length 0.187; body elongated; head distinct from neck. Internasals sub-triangular, wider than long; prefrontals sub-rectangular, wider than long, bordering orbits; frontal shield-shaped; one relatively small supraocular; parietals irregular, longer than wide; rostral almost invisible from above, wider than deep; nasals undivided; single loreal, separating from eyes; single preocular; single thin elongated subocular; postocular fused with subocular, supraocular sub-triangular; temporals 2+3+3; seven supralabials, separating from eyes; 8–9 infralabials, anterior-most in contact with opposite between mental and anterior chin-shields, first four in contact with anterior chin-shields; three chin-shields pairs, anterior pairs larger than other two; ventral scales 170; cloaca undivided; subcaudals 54, paired; dorsal scales in 15 rows throughout, three median rows enlarged, 3–7 rows of mid dorsal scales keeled; 6–7 maxillary teeth.
Solid black marking on back of head extending along whole dorsal of body and tail; sides of head light brownish yellow, speckled with small, irregular, dark brown spots; two black spots on each side of head, anterior one on intersection of anterior two temporals and 6th and 7th supralabials, posterior one on middle of 7th supralabial; vertical brownish yellow stripe on neck, eight scales long and 1–2 scales wide; body brownish yellow with numerous irregular black cross-bands on lateral of body, contacting with solid black dorsal of body, some extending to edges of ventral scales; belly light brown with sparse dark brown spots; tail purely black except for first 20 pairs of subcaudals light brown.
The paratypes agree in most respects with the description of the holotype. A comparison of the most important morphological characters is summarized in Suppl. material
The new species is named after the type locality Mengzi City, Yunnan Province, China. We suggest the common name “Mengzi Snail-eating Snake” in English and “Mengzi Dun-tou-she (蒙自钝头蛇)” in Chinese.
This species is currently known only from the type locality Mengzi City, Yunnan, China, in deciduous broad-leaved forest with a subtropical monsoon climate. It is expected to be located in the surrounding plateau regions.
Pareas mengziensis sp. nov. can be distinguished from P. carinatus, P. nuchalis, and P. menglaensis sp. nov. by having one thin elongated subocular (vs. two or three suboculars). It is most similar to P. yunnanensis Mell, 1931, P. niger Pope, 1928, and P. nigriceps in terms of color pattern, but differs from these species by eight or nine infralabials (vs. seven) and three rows of mid dorsal scales enlarged (vs. not enlarged or only one enlarged mid dorsal scale). It differs from the remaining species of Pareas by having a large solid black area on back of head and body.
It was noticed that both morphological comparisons and molecular analyses consistently showed that Pareas contained two distinct evolutionary lineages with distinguishable morphological differences and significant genetic divergences; however, the non-monophyly of Pareas was not well supported, and the loci used and specimens measured were limited. Whether Pareas should be split into two distinct genera needs more data to clarify.
Finally, a key to the species of Pareas is provide in Appendix
This project was supported by grants from the Strategic Priority Research Program of the Chinese Academy of Sciences (CAS) (XDA 20050201) , the Second Tibetan Plateau Scientific Expedition and Research (STEP) program (No. 2019QZKK05010105), Southeast Asia Biodiversity Research Institute, the Chinese Academy of Sciences (CAS) (Y4ZK111B01: 2017CASSEABRIQG002), the Animal Branch of the Germplasm Bank of Wild Species, CAs (Large Research Infrastructure Funding), and the National Natural Science Foundation of China (NSFC 31372152). We are grateful to Guanghui Zhong, Ting Tang, Yulin Xie, Yimin Yang, Fei Zhu, Jichao Wang, Tongliang Wang, Yufan Wang, Liang Zhang, Hongman Chen, and Shuai Wang for their assistance in field work; Anita Malhotra, Li Ding, and Mian Hou are acknowledged for tissue loans. We thank Wuyi Mountain National Nature Reserve of Jiangxi Province, Jianfengling National Forest Park of Hainan Province, and Zhejiang Forest Resources Monitoring Center for support in our field work.
Specimens morphologically examined in this study
Pareas formosensis : Hainan, China (YBU 12015, YBU 12032, YBU 17029, R0263, R0542, R0543), Leishan, Guizhou, China (YBU 12090), Rongjiang, Guizhou, China (YBU 12115), Fangchenggang, Guangxi, China (YBU14508), Yanshan, Jiangxi, China (YBU 14573). P. mengziensis sp. nov.: Mengzi, Yunnan, China (YBU 14251, YBU 15252, YBU 14253, YBU 14288), Kaiyuan, Yunnan, China (YBU 15100, YBU 15114). P. boulengeri: Chunan, Zhejiang, China (YBU 17155, YBU 17245), Wufeng, Hubei, China (YBU 13323A). P. chinensis: Junlian, Sichuan, China (YBU 14126, YBU 16134, YBU 17043), Yingjing, Sichuan, China (YBU 16119, YBU 16122). P. stanleyi: Leishan, Guizhou, China (YBU 12094). P. macularius: Hainan, China (R0047, R0048, R0210, R0545, R0546, R0547, YBU 12016, YBU 17030), Jingdong, Yunnan, China (YBU 17062, YBU 17078). P. margaritophorus: Cangwu, Guangxi, China (YBU 16061, YBU 16077, YBU 16095, YBU 17164). P. menglaensis sp. nov.: Mengla, Yunnan, China (YBU 14124, YBU 14141, YBU 14142).
Key to Pareas species
1 | Two or three distinct narrow suboculars | 2 |
– | One thin elongated subocular | 4 |
2 | Prefrontal bordering orbits, a large black blotch on the nape | P. nuchalis |
– | Prefrontal separated from orbit, absence black blotch on the nape | 3 |
3 | 3–5 rows of middle dorsal scales keeled | P. carinatus |
– | 9–13 rows of middle dorsal scales keeled | P. menglaensis sp. nov. |
4 | Uniform purple brown or blue gray above with bicolored cross bars (color pattern I) | 5 |
– | Light or dark brown above without bicolored dorsal scales (color pattern II) | 6 |
5 | All dorsal scales smooth | P. macularius |
– | Dorsal scales keeled | P. margaritophorus |
6 | Loreal bordering orbit | 7 |
– | Loreal separating from orbit | 10 |
7 | Vertebral scales enlarged | P. monticola |
– | Vertebral scales not enlarged | 8 |
8 | Supralabials 6 | P. vindumi |
– | Supralabials 7 or 8 | 9 |
9 | All dorsal scales smooth | P. boulengeri |
– | Five rows of middle dorsal scales keeled | P. stanleyi |
10 | Dorsal scales not enlarged | P. chinensis |
– | Dorsal scales enlarged | 11 |
11 | Three rows middle dorsal scales enlarged | 12 |
– | Only vertebral scales enlarged | 14 |
12 | A large black area on the back of head and body | P. mengziensis sp. nov. |
– | Absence large black area on the back of head and body | 13 |
13 | Temporals 2+4, 5–9 rows middle dorsal scales keeled | P. atayal |
– | Temporals 2+3 or 3+4, 9–13 rows middle dorsal scales keeled | P. komaii |
14 | Temporals 1+2 | 15 |
– | Temporals 2+3 or 3+4 | 16 |
15 | The back of head purely black, postocular absent | P. nigriceps |
– | The back of head pale brown with black spots, postocular 1 | P. hamptoni |
16 | All dorsal scales smooth or 2 middle rows feebly keeled | P. formosensis |
– | Middle dorsal scales keeled in rows 5–7 | P. iwasakii |
Appendix S1
Data type: occurrence
Explanation note: Samples and sequences used in this study (BHNS: Bombay Natural History Society, Mumbai, India; CAS: California Academy of Science, San Francisco, USA; CES: Centre for Ecological Sciences, IISc, Bengaluru, India; FK: voucher listed by
Appendix S2
Data type: measurement
Explanation note: Characters recorded of Pareas.
Appendix S3
Data type: measurement
Explanation note: A comparison between holotype and paratypes of two new described species.
Figure
Data type: multimedia
Explanation note: The comparisons of anterior dorsal and head (column 1), lateral middle body (column 2) and subcaudal coloration (column 3) among Mengzi specimens and relatives. A Mengzi specimens B Pareas formosensis C P. chinensis D P. boulengeri E P. stanleyi.