Data Paper |
Corresponding author: Lucio Bonato ( lucio.bonato@unipd.it ) Academic editor: Vishwas Chavan
© 2014 Lucio Bonato, Massimo Lopresti, Alessandro Minelli, Pierfilippo Cerretti.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Bonato L, Lopresti M, Minelli A, Cerretti P (2014) ChiloKey, an interactive identification tool for the geophilomorph centipedes of Europe (Chilopoda, Geophilomorpha). ZooKeys 443: 1-9. https://doi.org/10.3897/zookeys.443.7530
Resource citation:
Bonato L, Minelli A, Lopresti M, Cerretti P (2014) ChiloKey, an interactive identification tool for the geophilomorph centipedes of Europe (Chilopoda, Geophilomorpha). Available from: http://www.biologia.unipd.it/chilokey/ and http://www.interactive-keys.eu/chilokey/. doi: 10.3897/zookeys.443.7530
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ChiloKey is a matrix-based, interactive key to all 179 species of Geophilomorpha (Chilopoda) recorded from Europe, including species of uncertain identity and those whose morphology is known partially only. The key is intended to assist in identification of subadult and adult specimens, by means of microscopy and simple dissection techniques whenever necessary. The key is freely available through the web at: http://www.biologia.unipd.it/chilokey/ and at http://www.interactive-keys.eu/chilokey/.
Interactive key, identification, morphology, Chilopoda , Geophilomorpha , Europe
Purpose: At present, species identification of centipedes (Chilopoda) can be hardly carried on through effective identification tools, because adequate keys or diagnostic tables are available only for selected faunas and taxonomic subgroups. More often, the identification of specimens still requires retrieving and interpreting the original species descriptions, which are scattered in the primary taxonomic literature. Additionally, it often requires comparing the specimens of unknown identity with reference specimens that have been already identified by expert taxonomists.
This is true in particular for the diverse centipede order Geophilomorpha, which comprises 40% of all known species of Chilopoda (
Recently, after completing a comprehensive synopsis of the European species of Geophilomorpha (
Project title: ChiloKey.
Personnel: The authors.
Study area descriptions/descriptor: The key includes all species of ChilopodaGeophilomorpha that have been recorded from Europe. The area is delimited according to the conventional boundaries adopted in Fauna Europaea (
General taxonomic coverage description: The key includes a total 179 species (supplementary file
Applicability and identification units: The key is intended to allow species-level identification of adult or subadult specimens, i.e. specimens with visible gonopods. The key allows also distinguishing the sex. Within a single species, the male and female phenotypes are treated operationally as distinct identification units, because some of the characters employed (different in different species) are also sexually dimorphic, and because some characters are applicable and effective in distinguishing species only for the male but not for the female or vice versa.
Morphological terminology: The key follows the conventional morphological terminology defined and illustrated by
Operational methods: Only a few characters can be evaluated properly by means of a stereomicroscope, with incident light and at low magnification. In most cases, it is recommended to examine the specimen by means of a microscope, in transmitted light and at higher magnification, after including the specimen in a non-permanent microscopic slide.
The effective evaluation of some characters requires one or both of the following operations:
– detaching head from trunk. Recommended protocol: keeping the specimen under a stereomicroscope, on soft ground, with the dorsal side upwards; piercing the dorsal membrane between head and forcipular tergite repeatedly by means of a scalpel-like pin;
– detaching the maxillary complex from the remaining part of the head. Recommended protocol: after detaching head from trunk, keeping the head under a stereomicroscope, on a soft ground, with the ventral side upwards; piercing the lateral membranes connecting the second maxillary coxosternite to the pleurites repeatedly by means of a scalpel-like pin.
Further practical instructions are given by
Characters: A total of 89 characters have been considered, including 51 binary characters, 37 multistate characters with 3–5 alternative states each, and a “filtering” character (number of leg-bearing segment), which is allowed to assume any integer value up to 999. Of the characters, 15 are depending on the state of another character, therefore their applicability is constrained. The characters have been selected giving priority to those with null or negligible intraspecific variation with respect to our state definitions, and to those that do not require dissection. Among the characters proposed and employed in the literature as diagnostic between species, we excluded those that have been found or suspected to be actually poorly effective, because of either intraspecific variability or artifactual origin (
Sources of data: Characters have been coded for each species referring to selected published descriptions and illustrations (indicated in the species-file under “Main references”, see below; full references in supplementary file
For a single species, more than one state have been assigned to a character whenever (i) there is interindividual variation, including sexual dimorphism, or (ii) the actual condition of the character is uncertain in the species, or (iii) subjectivity in evaluation could bring different users to score different states as present in the specimens at hand.
As to the number of leg-bearing segments, almost all species reported from Europe are known or expected to have interindividual variation in the number, the range of variation differing in different species, and the width of variation correlating approximately with the average value (
Species-files: For any species, the following information is provided in a standardized way: “Valid name” of the species; “Family”; “Other names” (other names frequently used for the species after 1950, including synonyms, different generic combinations and alternative spellings); “Short description”; “Similar species” (selected species that could be misidentified, with main differential characters listed in parentheses); “Distribution” (known distribution in Europe, listing the main geographical areas from where the species has been reported reliably); “Taxonomic notes”; “Main references” (published sources that we considered for the morphology of the species; full citations in supplementary file
Phylum: Arthropoda
Class: Chilopoda
Order: Geophilomorpha
Family:Dignathodontidae, Geophilidae, Himantariidae, Linotaeniidae, Mecistocephalidae, Oryidae, Schendylidae
Genus:Acanthogeophilus, Algerophilus, Arctogeophilus, Arenophilus, Bebekium, Bothriogaster, Clinopodes, Dicellophilus, Dignathodon, Diphyonyx, Escaryus, Espagnella, Eurygeophilus, Folkmanovius, Galliophilus, Geophilus, Gnathoribautia, Haplophilus, Haploschendyla, Henia, Himantariella, Himantarium, Nannophilus, Nothogeophilus, Nyctunguis, Orya, Pachymerium, Photophilus, Pleurogeophilus, Schendyla, Schizotaenia, Stenotaenia, Stigmatogaster, Strigamia, Thracophilus, Tuoba
General spatial coverage: The key includes all species of ChilopodaGeophilomorpha that have been recorded from Europe. In addition to the species whose validity is not questioned at present, included are also the nominal species whose taxonomic distinction is still uncertain and/or whose morphology is known only incompletely. Instead, we excluded alien species that have been occasionally reported from Europe but are probably not established in the wild, and also those that have been reported from Europe only by mistake.
Coordinates: between 33°50'24"N and 72°8'24"N Latitude; between 12°6'36"W and 43°45'0"E Longitude
Natural collections description
Parent collection identifier: Not applicable
Collection name: Department of Biology, University of Padova
Collection identifier: http://www.bio.unipd.it/
Specimen preservation method: Alcohol
a) http://www.biologia.unipd.it/chilokey/
b) http://www.interactive-keys.eu/chilokey/
Repository: Department of Biology, University of Padova, Padova, Italy
Metadata language: English
Date of metadata creation: 2014-06-05
Platform: Windows Server 2003 - Microsoft Framework. NET 4
Programming Language: Asp.NET
Data base: MS Windows SQLSERVER, IIS6, NET 4.0
Application version: ChiloKey 1.0
Update police: The application can be augmented/updated only by, or in agreement with, the corresponding authors of this paper. Authors keep updated both the web application, by implementing new functions, and the data matrix, by improving encoded descriptions of terminal taxa. Every change can be monitored on the homepage and reported in the TXT export data file, by updating the number of the application version and by changing the date of the last modification to the data matrix. A short message on the homepage may describe differences from the previous version, if needed.
Use of the primary data: Primary data are available from the corresponding authors by agreement.
Licence for the use of the key: Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
We are grateful to G. Cortese for helping us to adapt and deliver ChiloKey through the institutional servers at the University of Padova, A. Barber for improving the English language in the key, and colleagues and students who helped us to test the key.
Species of Geophilomorpha included in ChiloKey 1.0
Data type: Species data.
Species of Geophilomorpha included in ChiloKey 1.0, as released in 2014, and other species of Geophilomorpha reported from Europe but not included in ChiloKey 1.0, because either not established in the wild or most probably recorded only erroneously.
Bibliographic sources for the morphology matrix
Data type: References list.
Bibliographic sources for the morphology matrix of the species of Geophilomorpha in ChiloKey 1.0, as released in 2014.