Research Article |
Corresponding author: Łukasz Sługocki ( lukasz.slugocki@usz.edu.pl ) Academic editor: Danielle Defaye
© 2019 Łukasz Sługocki, Anna Rymaszewska, Lucyna Kirczuk.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Sługocki Ł, Rymaszewska A, Kirczuk L (2019) Insights into the morphology and molecular characterisation of glacial relict Eurytemora lacustris (Poppe, 1887) (Crustacea, Copepoda, Calanoida, Temoridae). ZooKeys 864: 15-33. https://doi.org/10.3897/zookeys.864.34259
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Eurytemora lacustris (Poppe, 1887) is a stenothermic glacial relict whose narrow environmental requirements make it an indicator species for good ecological conditions. The primary threats to this species are eutrophication and global warming. Many authors have described E. lacustris in taxonomic keys; however, its morphological description is unsatisfactory. Therefore, in this study, we aimed to review morphological characteristics of E. lacustris that were previously undescribed in the literature and to provide the molecular characteristics based on the two conservative mitochondrial genes: cytochrome c oxidase I (COI) and cytochrome b (cytb). The new record of E. lacustris indicates that it is a more widespread species than previously hypothesized. Width-to-length ratio of the last female endopod segment of legs indicates variation among the widely distributed species of the genus in Europe (i.e., E. lacustris, E. velox (Lilljeborg, 1853), and E. affinis (Poppe, 1880)). We also found variability of number of setae on the second segment of male endopod. Furthermore, our analysis confirms the occurrence of species in different than exclusively freshwater habitats.
Brackish water, crustaceans, genetics, lake, rare species, zooplankton
The marine, estuarine, and freshwater genus Eurytemora is represented in Europe by eight species (22 worldwide) (
Eurytemora lacustris (Poppe, 1887) is a glacial relict that evolved from a marine ancestor in the ancient Holocenic Ancylus Lake into an exclusively freshwater species (Ekman 1922;
During the 20th century, environmental impact resulted in the decline of the population of E. lacustris, which made the species more difficult to obtain than before (
Eurytemora lacustris was found beyond the reach of the glaciation ice sheet, which suggests that this species could not be considered as a typical postglacial relict (
Despite the fact that many authors have identified the species in taxonomic keys (
Specimens of E. lacustris were obtained in September 2017 from Lake Cieszęcino (53°55'41.7"N, 16°49'29.6"E) (Fig.
Distribution map of Eurytemora lacustris. Dark grey colour indicates present distribution of E. lacustris. Light grey colour demonstrates countries in which occurrence of this species is uncertain. Black dots indicate records in 21st century, asterisk indicates a new record of E. lacustris in Lake Cieszęcino (Poland). The map does not include recent records in Volga basins (
Sampling station was set up at the deepest point, based on bathymetric maps (
Body size of the specimens was measured without caudal setae. Appendages were dissected using glycerine as the dissecting fluid, and measured under a microscope at 400 × magnification. Morphological description is based on adult female specimens. In two cases, the morphology of males is also mentioned (if so, it is emphasized). Specimens are stored at the collections of the University of Szczecin, Poland. Each variable was measured from digital photographs, using the software ToupView (ToupTek Photonics, China). The significance of differences in size between sexes was calculated using nonparametric Mann-Whitney U test (Statistica 12, StatSoft). For molecular analysis, individuals were transferred to PBS tubes (phosphate buffered saline) (n=80), followed by DNA isolation using the ready-made Tissue Genomic Extraction Mini Kit (with Proteinase K, Genoplast). Until the analyses were performed, the DNA was stored in a freezer (−70 °C).
Polymerase chain reaction (PCR) was performed twice for each specimen: amplification of the cytochrome c oxidase subunit I gene (COI, cox1) and cytb. Both genes are located in mtDNA and belong to the group of conservative genes that allow species identification. PCR amplification was conducted using the following primers: COIF-PR115 and COIR-PR114 for COI (
Sequential analysis was performed for all samples. Sequencing was performed in Macrogen Europe (the Netherlands) with the same sets of primers that were used to obtain amplicons. The results were analysed using the Finch TV, BLAST, and Mega 7 software. Phylogenies were constructed using the Minimum Evolution method algorithm with Tamura–3-parameter model. A 1000-replicate bootstrapping was performed to obtain a measure of robustness of tree topology. COI and cytb sequences of E. lacustris have been reported to the GenBank (cox1: MH316160, MH316161; cytb: MH316162–MH316164). Due to the lack of data concerning deposited type specimens (
Length of 40 adult specimens (20 females and 20 males) ranging from 1.274 to 1.483 mm. No significant differences in the body size between the two sexes (p > 0.05). Antennules of 24 segments with variable setation. Male right antennule with 21 segments. Most segments with two and more setae provided with one aesthetasc and distal segment with six setae and one aesthetasc. Antenna biramous, composed of two-segmented protopod, two-segmented endopod and seven-segmented exopod. First exopod segment with one seta, second segment with three setae, third to sixth segments with one seta each, seventh (distal) segment with four setae. First endopodal segment with two setae, second with nine setae laterally, and seven setae at distal end. Mandible (Fig.
First pair of legs (Fig.
Selected characteristics of the three related Eurytemora species (E. affinis, E. velox, and E. lacustris). The value indicates the normalized ratio for size of the body parts.
E. affinis | E. velox | E. lacustris | ||||||||
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present study | |
endopod 1 (length-width) ♀ | 100/36.1 | 100/33.7 | 100/31.9 | |||||||
endopod 1 (spine length-width) ♀ | 100/102 | 100/96.4 | 100/119 | |||||||
endopod 2 (length-width) ♀ | 100/24.2 | |||||||||
endopod 2 (spine length-width) ♀ | 100/93.4 | |||||||||
endopod 3 (length-width) ♀ | 100/24.6 | 100/39.8 | 100/21.8 | 100/21.6 | ||||||
endopod 3 (spine length-width) ♀ | 100/104 | 100/103.9 | 100/96.4 | 100/92.5 | ||||||
endopod 4 (length-width) ♀ | 100/31.9 | 100/35.3 | 100/24.9 | |||||||
endopod 4 (spine length-width) ♀ | 100/97.4 | 100/100 | 100/102 | |||||||
furca (length-width) ♂ | 100/8.1 | 100/11.4 | 100/16.3 | 100/12.3 | 100/14.6 | 100/10.6 | 100/14.2 | |||
furca (length-width) ♀ | 100/11.1 | 100/14 | 100/13.1 | 100/24.6 | 100/25.1 | 100/26.4 | 100/13.5 | 100/14.6 | 100/13.8 | 100/19 |
body length (µm)♂ | 1150 | 1200–1800 | 800–1900 | 2200 | 1300–2200 | 1100–2200 | 1300 | 1000–1500 | 1100–1500 | 1272–1456 |
body length(µm)♀ | 1100–1700 | 750–1650 | 1850 | 1000–1900 | 1500–1850 | <1400 | 1000–1400 | 1274–1483 |
For each specimen of E. lacustris, amplicons of the expected length were obtained, of approximately 612 bp for the COI gene and 369 bp for the cytb. Subsequently, we performed nucleotide sequence analysis. Cox1 gene analysis showed high degree of similarity in the nucleotide sequences for the population from Lake Cieszęcino (Poland). Two haplotypes were distinguished: one of them, described as CX-01 (MH316161) was represented only by 12.5% of the population (10 individuals). Sequencing of the cox1 gene resulted in 612 bp, of which differences were related to the five nucleotide positions (Tab.
Evolutionary relationship of taxa based on mCOI sequences. The phylogenetic tree was inferred using the Minimum Evolution method (MEGA 10.0.5, Kumar et al. 2018). The evolutionary distances were computed using the Tamura 3-parameter method [3] and are in the units of the number of base substitutions per site. Sequences deposited at GenBank from
Variability in the nucleotide sequences of the gene cox1 for Eurytemora lacustris from Cieszęcino Lake (NW Poland) and Baltic Sea, Vyborg Gulf (Alekseev and Sukhikh, unpublished).
Position in sequences/ Accession number | 58 | 69 | 210 | 303 | 309 | 399 | 405 | 759 | 582 | 612 |
T | T | G | A | C | A | A | T | T | C | |
CX-02* | · | · | · | · | · | · | · | · | · | · |
CX-01** | · | · | A | G | A | G | · | C | · | - |
HM474035 | C | · | A | · | · | · | G | · | · | T |
HM474034 | C | · | A | · | · | · | · | · | · | T |
HM474033 | · | · | A | · | · | · | · | · | · | · |
HM474032 | · | · | A | · | · | · | · | · | · | T |
HM474031 | · | · | A | · | · | · | · | C | · | T |
HM474030 | · | C | A | · | · | · | · | C | C | T |
SUBSTITUTION | TZ | TZ | TZ | TZ | TW | TZ | TZ | TZ | TZ | TZ |
The most commonly used markers in the determination of selected Copepoda species.
Species | COI | cytb | rRNA genes | TGDNA | ISSR-PCR | Authors |
Calanus finmarchicus, C. glacialis, C. helgolandicus, Neocalanus cristatus, N. flemingeri, N. plumchrus, Pseudocalanus moultoni, P. newmani | × |
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Leptocaris canariensis | × | × |
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Leptodiaptomus garciai | × |
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L. minutus, Onychodiaptomus sanguineus | × |
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Pseudocalanus moultoni | × |
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Skistodiaptomus pallidus | × | × |
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S. reighardi | × |
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S. oregonensis, S. pygmaeus | × | × | × |
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Tigriopus japonicus | × |
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Species of family Temoridae incl. T. discaudata, T. longicornis | × | × | × | × |
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Eurytemora affinis | × |
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Eurytemora affinis | × |
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Eurytemora carolleeae | × |
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Eurytemora lacustris | × | GenBank Alekseev and Sukhikh, unpublished | ||||
Eurytemora lacustris | × | × | Present study |
Analysis of the cytb gene sequence from the E. lacustris population from Lake Cieszęcino revealed three haplotypes: designated as CY-01*** (MH316162); CY-02** (MH316163), and CY-03* (MH316164). These haplotypes were determined based on the analysis of substitution in the nucleotide sequence, in which three substitutions (transitions) were observed on the 369 bp section, at positions 205, 211, and 316 (Tab.
The occurrence of E. lacustris in the Lake Cieszęcino has not been recorded so far (NW Poland). The lake in which the new record of the species was obtained is one of the smallest in terms of surface area (
Eurytemora lacustris and E. affinis are similar in morphological terms.
Swimming legs may not differ on the number of setae on female and male individuals (except P2 endopod 2). It is not yet determined whether this phenomenon is specific for the population from Cieszęcino Lake, or whether it is common for that species.
The parameters of some appendages differ between related species (E. lacustris, E. affinis and E. velox). At the same time, differences are also observed between different authors. However, the parameter concerning the width-to-length ratio of the last endopod segment in females indicates variation between the indicated species (E. lacustris, E. velox, and E. affinis). Therefore, this parameter seems to be able to serve as an auxiliary parameter in morphological identification.
The most indicative features among Eurytemora species are related to fifth pairs of legs (
Morphology is the primary criterion in the determination of species affiliation. However, the small size of copepods could be an obstacle in terms of morphological determination. Genetic analysis among such species allowed to verify the species within morphologically similar specimens and hence give indication of cryptic species (
COI is a unique diagnostic tool for identifying copepods at the species level with barcoding (
Cytb also belongs to conservative mitochondrial genes that are successfully used to identify species of vertebrates (
The use of molecular and morphological analyses allows for a reliable determination of species affiliation and further research. The identification of juvenile stages is possible primarily with molecular analysis.
The research was supported by the funds of the National Science Center granted on the basis of decision number DEC-2017/01/X/NZ8/00793.