Research Article |
Corresponding author: Marina F. McCowin ( marruda@ucsd.edu ) Corresponding author: Greg W. Rouse ( grouse@ucsd.edu ) Academic editor: Christopher Glasby
© 2018 Marina F. McCowin, Greg W. Rouse.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
McCowin MF, Rouse GW (2018) Phylogeny of hydrothermal vent Iphionidae, with the description of a new species (Aphroditiformia, Annelida). ZooKeys 779: 89-107. https://doi.org/10.3897/zookeys.779.24781
|
The scale-worm family Iphionidae consists of four genera. Of these, Thermiphione has two accepted species, both native to hydrothermal vents in the Pacific Ocean; T. fijiensis Miura, 1994 (West Pacific) and T. tufari Hartmann-Schröder, 1992 (East Pacific Rise). Iphionella is also known from the Pacific, and has two recognized species; Iphionella risensis Pettibone, 1986 (East Pacific Rise, hydrothermal vents) and I. philippinensis Pettibone, 1986 (West Pacific, deep sea). In this study, phylogenetic analyses of Iphionidae from various hydrothermal vent systems of the Pacific Ocean were conducted utilizing morphology and mitochondrial (COI and 16S rRNA) and nuclear (18S and 28S rRNA) genes. The results revealed a new iphionid species, described here as Thermiphione rapanui sp. n. The analyses also demonstrated the paraphyly of Thermiphione, requiring Iphionella risensis to be referred to the genus, as Thermiphione risensis (Pettibone, 1986).
East Pacific Rise, Pacific Ocean, polychaete, systematics, scale-worm
Annelid scale-worms (Aphroditiformia) are a particularly common and diverse group at hydrothermal vents (
With regards to the hydrothermal vent-associated iphionids, Iphionella risensis Pettibone, 1986 was erected for specimens collected from the East Pacific Rise at 20°50'N. Similar to I. philippinensis, this species has 13 pairs of elytra. Thermiphione tufari Hartmann-Schröder, 1992, was described for specimens also collected from the East Pacific Rise at 21°30'S, well to the south of the type locality of I. risensis. A new genus, Thermiphione Hartmann-Schröder, 1992, was erected for this species. Thermiphione was distinguished from Iphionella by the presence of 14 pairs of elytra instead of 13, as well as by having a greater number of segments (
This paper focuses on new deep-sea collections of Iphionidae from Pacific Ocean hydrothermal vents. DNA data was previously published for Thermiphione fijiensis (as Thermiphione sp.) in
Sampling was conducted over several years and at multiple localities (Figure
Map of sampling localities for iphionids in this study. Species differentiated by color and shape, type localities represented by stars. A Thermiphione fijiensis type (star) and sampling (square) localities B Thermiphione tufari type (star) and sampling (octagon) localities, as well as Thermiphione rapanui sp. n. localities (triangle) C Thermiphione risensis (was Iphionella risensis) type (star) and sampling (hexagon) localities.
Origin of sequenced terminals, vouchers, and GenBank accession numbers. New sequences in bold. Family assignments follow
Scientific name | Origin | Voucher | 18S | 28S | 16S | COI |
---|---|---|---|---|---|---|
Panthalis oerstedi | Sweden | SMNH118954 | AY839572 | JN852845 | JN852881 | AY839584 |
Iphione cf. treadwelli | Eilat, Israel | – | KY823447 | – | KY823478 | KY823494 |
Iphione sp. 1 | Hong Kong | – | KY753852 | KY753852 | KY753835 | KY753835 |
Iphione sp. 2 | Papua New Guinea | SMNH118972 | JN852819 | – | JN852886 | JN852921 |
Iphione sp. 3 | Lord Howe Island, Australia | SIO-BIC A8708 | – | – | – | MH389786 |
Thermiphione risensis (was Iphionella risensis) | Gulf of California | SIO-BIC A6326 | MG994954 | MH000396 | MG994947 | MG981037 |
Thermiphione tufari | East Pacific Rise | SIO-BIC A7973 | MG994958 | MH000401 | MG994951 | MG981042 |
Thermiphione sp. (fijiensis) | Fiji, Lau Basin | SMNH118982 | JN852820 | JN852849 | JN852887 | JN852922 |
Thermiphione fijiensis | Lau back-arc Basin | SIO-BIC A7975 | MG994960 | MH000402 | MG994953 | MG981044 |
Thermiphione rapanui sp. n. | East Pacific Rise | SIO-BIC A7969 | MG994955 | MH000397 | MG994948 | MG981038 |
Sampling localities and GenBank COI accession numbers for all specimens collected and sequenced for this study.
Specimen | Voucher | Locality | Latitude / Longitude | Depth (m) | COI Accession No. |
---|---|---|---|---|---|
Iphionella risensis | SIO-BIC A6326 | Alarcon Rise, Gulf of California | 23°22'37"N, 108°31'52"W | 2,309 | MG981037 |
Thermiphione rapanui sp. n. | SIO-BIC A7969 | Pacific Antarctic Ridge | 37°47'60"S, 110°55'0"W | 2,216 | MG981038 |
Thermiphione rapanui sp. n. | SIO-BIC A7970 | Pacific Antarctic Ridge | 37°47'60"S, 110°55'0"W | 2,216 | MG981039 |
Thermiphione rapanui sp. n. | SIO-BIC A8557 | Pacific Antarctic Ridge | 37°47'60"S, 110°55'0"W | 2,216 | – |
Thermiphione rapanui sp. n. | SIO-BIC A7971 | East Pacific Rise | 23°32'47"S, 115°34'11"W | 2,595 | MG981040 |
Thermiphione rapanui sp. n. | SIO-BIC A7972 | East Pacific Rise | 23°32'47"S, 115°34'11"W | 2,595 | MG981041 |
Thermiphione tufari | SIO-BIC A7973 | East Pacific Rise | 23°32'47"S, 115°34'11"W | 2.595 | MG981042 |
Thermiphione tufari | SIO-BIC A7974 | East Pacific Rise | 23°32'47"S, 115°34'11"W | 2.595 | MG981043 |
Thermiphione fijiensis | SIO-BIC A7975 | Lau Back-Arc Basin | 20°19'0"S, 176°9'0"W | 2,719 | MG981044 |
Thermiphione fijiensis | SIO-BIC A8510 | Kilo Moana, Lau Back-Arc Basin | 20°3'0"S, 176°9'0"W | 2,657 | MG981045 |
Iphione sp. 3 | SIO-BIC A8708 | Lord Howe Island, Australia | 31°31.603'S, 159°4.518'E | 5 | MH389786 |
DNA extraction of specimens from the aforementioned collection sites was conducted with the Zymo Research DNA-Tissue Miniprep kit, following the protocol supplied by the manufacturer. Up to 645 bp of mitochondrial cytochrome subunit I (COI) were amplified using the primer set HCO2198 and LCO1490 (
Alignments of the newly generated sequences, along with sequence data from GenBank for the four genes presented in Table
Most parsimonious reconstructions for a few relevant characters were mapped onto the molecular phylogeny of Iphionidae using Mesquite v.3.4 (
1. Elytra. Thirteen pairs of elytra are found in Iphionella (Pettibone, 1986), while Thermiphione has 14 pairs (
2. Palps. Within Iphionidae, Iphione have papillate palps, while all other Iphionidae and the outgroup have smooth palps (
3. Eyes. Within Iphionidae, Thermiphione and Iphionella risensis lack obvious eyes, while all other Iphionidae and the outgroup have them (
4. Antennae. In general, Aphroditiformia have a median antenna, while most have lateral antennae (
Iphionella was erected by
The complete and Gblocked ML, BI and MP analyses (Figure
Maximum likelihood tree of the combined analysis from four genes (28S, 18S, 16S, COI) aligned with MAFFT and then concatenated (No Gblocks). Numbers above nodes are bootstrap support percentages from RAxML and Maximum Parsimony analyses (separated by slashes), followed by Bayesian posterior probabilities from the complete dataset alignment (no Gblocks) and below nodes from Gblocks. Support values of 95% or greater for all analyses are indicated by stars.
The two known Thermiphione species, T. fijiensis and T. tufari, formed a grade with respect to Iphionella risensis (Figure
Thermiphione rapanui sp. n. | Thermiphione tufari | Thermiphione fijiensis | Thermiphione (Iphionella) risensis | Iphione cf. treadwelli | Iphione sp. 1 | Iphione sp. 2 | |
---|---|---|---|---|---|---|---|
Thermiphione tufari | 10.48% | – | – | – | – | – | – |
Thermiphione fijiensis | 15.39% | 16.67% | – | – | – | – | – |
Thermiphione (Iphionella) risensis | 13.39% | 14.25% | 14.79% | – | – | – | – |
Iphione cf. treadwelli | 18.14% | 19.88% | 17.27% | 19.23% | – | – | – |
Iphione sp. 1 | 21.75% | 19.73% | 20.39% | 21.52% | 18.78% | – | – |
Iphione sp. 2 | 23.81% | 24.01% | 21.66% | 24.00% | 23.35% | 24.73% | – |
Iphione sp. 3 | 18.49% | 19.92% | 17.42% | 19.06% | 0.76% | 19.75% | 23.14% |
The parsimony reconstruction of ancestral states revealed an unambiguous convergent appearance of 14 pairs of elytra in Thermiphione fijiensis and Thermiphione tufari and that an elytral number of 13 represents the plesiomorphic state for Iphionidae. The absences of eyes and lateral antennae may be apomorphies for Thermiphione (but see below) (Figs
Haplotype networks from COI data: A Thermiphione fijiensis network includes two sequences from specimens from the Lau Back-Arc Basin (black), and one from the type locality in Fiji (grey) B Thermiphione rapanui sp. n. network includes two sequences from 23°S (black) and two from 37°S (grey).
Thermiphione tufari Hartmann-Schröder, 1992
(emended). Ventrally flattened, short, oval-shaped body. Between 28 and 32 segments in adults, with 13 or 14 pairs of elytra on segments 2, 4, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 26 (and 27, if 14 pairs) that cover dorsal side. Elytra rounded, covered with polygonal and/or hexagonal areas with lattice-like areolae; may exhibit papillae along elytral margins and on elytral surface near margins. Bilobed prostomium square to oval, merged with segment 1, with short, smooth, bulbous palps. Lateral and median antennae absent. Eyes absent. Segment 1 with paired enlarged anterior cirri (sensu
Dorsal and ventral micrographs of species in Thermiphione. Scale bars represent 5 mm. A Thermiphione fijiensis (SIO-BIC A7975), dorsal B Thermiphione risensis (SIO-BIC A6326, was Iphionella risensis), dorsal C Thermiphione tufari (SIO-BIC A7973), dorsal D Thermiphione fijiensis (SIO-BIC A7975), ventral E Thermiphione risensis (SIO-BIC A6326), ventral.
German Flats, hydrothermal vents of Pacific Antarctic Ridge, 110°55'W, 37°48'S.
Material Examined.Type specimens. Holotype (SIO-BIC A8557) from German Flats, hydrothermal vents of Pacific Antarctic Ridge, (type locality above), HOV Alvin Dive 4088, 2216m depth, 22 March 2005; fixed in 10% SW formalin, preserved in 50% ethanol. The holotype was not sequenced directly to avoid damage but was morphologically identical to sequenced specimens from the same locality. Post-preservation, holotype 10 mm long, 8.5 mm wide including parapodia, 31 segments. Paratypes: 1 specimen (SIO-BIC A7969) fixed and preserved in 95% ethanol, same location as holotype, post-preservation 9 mm long, 7 mm wide, 29 segments; 1 specimen (SIO-BIC A7970) from same location as holotype: anterior of specimen (approximately 14 segments) fixed in 10% SW formalin and preserved in 50% ethanol and posterior (approximately 14 segments) fixed and preserved in 95% ethanol; 2 specimens (SIO-BIC A7971, juvenile; SIO-BIC A7972) from the western flank of the Easter Microplate, East Pacific Rise, 115°34'W, 23°32'S, HOV Alvin Dive 4096, 2595m depth, 6 April 2005. SIO-BIC A7971 fixed and preserved in 95% ethanol, post-preservation 7 mm long, 4 mm wide, 19 segments; SIO-BIC A7972: anterior of specimen (approximately 20 segments) fixed in 10% SW formalin and preserved in 50% ethanol and posterior (approximately 9 segments) fixed and preserved in 95% ethanol.
Ventrally flattened, oval-shaped body. Between 29 and 31 segments, with 13 pairs of elytra on segments covering dorsum. Elytra covered completely by polygonal areas enclosing areolae, with marginal papillae covering edges. Prostomium bilobed and slightly rounded. Eyes absent. Lateral and median antennae absent. Segment 1 with pair of smooth palps and pair of tentaculophores plus enlarged anterior cirri (tentacular cirri). Mouth anterior with eversible pharynx. Segment 2 with buccal cirri. Segment 3 with dorsal tubercles. Dorsal cirri long with short styles. Ventral cirri short. Anus dorsal. Parapodia biramous with dense bundles of feathered notochaetae and less dense hooked neurochaetae.
In life, elytra pale brown with yellow tinge, becoming slightly paler after preservation. Body ventrally flattened, slightly tapered at anterior and posterior ends (Figure
Micrographs of live Thermiphione rapanui, sp. n., holotype (SIO-BIC A8557) and paratype (SIO-BIC A7969). Scale bars in A–E represent 1 mm, and scale bars in F–H represent 0.5 mm. A Dorsal view of whole body, holotype B Ventral view of whole body with pharynx everted, holotype C Dorsal view of whole body, paratype D Ventral view of whole body, paratype E Dorsal view of anterior region with scales, holotype F Dorsal view of anterior region with 2 pairs of scales removed, holotype. Abbreviations as follows: tp, terminal papilla; p, palp; t, tentaculophore; e, elytrophore G Ventral view of anterior region with pharynx and jaws everted/visible, holotype. Abbreviations: dj, dorsal jaw; tp, terminal papilla; vj, ventral jaw H Dorsal view of anterior region, paratype. e, elytrophore; bp, prostomium (bilobed); mn, medial nodule.
Pharynx everted anteriorly in holotype, with 9 pairs terminal papillae, and dorsal and ventral pairs of hook-shaped jaws (Figs
Variation. Paratypes vary in segment number from holotype and were observed with fewer bacterial filaments on elytra.
Micrographs of Thermiphione rapanui sp. n. holotype (SIO-BIC A8557) and paratype (SIO-BIC A7971), stained with Shirlastain-A. Scale bars in A–C represent 1 mm, and scale bars in D–E represent 0.25 mm. A Dorsal view of anterior with 2 pairs of scales removed, holotype B Ventral view of anterior showing palps tentaculophore and cirri, paratype. C Ventral view of anterior with pharynx everted and jaws visible, holotype D Magnified dorsal view of anterior right side, holotype. Abbreviations as follows: e, elytrophore; p, palp; t, tentaculophore; eac, enlarged anterior cirrus E Magnified ventral view of left anterior parapodia and ventral cirri on segments 2 and 3, holotype. Abbreviations: bc, buccal cirrus; vc, ventral cirrus.
Interference contrast micrographs of Thermiphione rapanui sp. n elytra, paratype (SIO-BIC A7969). Scale bars in A–C represent 1mm, and scale bars in D–F represent 0.1 mm. A Right elytron 1 B Right elytron 3 C Left elytron 13 D Right elytron 1 margin E Right elytron 3 margin F Left elytron 13 margin.
Interference contrast micrographs of Thermiphione rapanui sp. n. parapodia, (paratype SIO-BIC A7969). Scale bars in A–D represent 0.5 mm, and scale bars in E–L represent 0.1 mm. A Right parapodium 1 B Right parapodium 2 C Right parapodium 13 D Right parapodium 25 E Enlarged view of ventral cirrus (parapodium 2) F Feathered notochaetae (parapodium 2) G Chaetae of parapodium 25 H Notochaetae of right parapodium 2. I Slightly hooked neurochaetae (right parapodium 25) J Feathered notochaetae of parapodium 25 K Simple neurochaetae (some slightly hooked) from right parapodium 13. L Feathered notochaetae from right parapodium 13.
Paratype specimens from the 23°S sampling locality varied by two nucleotide bases from the holotype specimen, 37°S (Figure
Thermiphione rapanui sp. n. is named after the traditional Polynesian name for Easter Island (Rapa Nui), which lies near one of the paratype localities. Neither of the specimens from near Easter Island were chosen as the holotype as they were in poor condition.
Thermiphione rapanui sp. n. was collected from hydrothermal vents across 15 degrees of latitude, with the northernmost samples collected from the western flank of the Easter Microplate region at 23°S latitude, and the samples from further south collected on the East Pacific Rise at 37°S. The northernmost samples of Thermiphione rapanui sp. n. were collected from the same locality as samples of its sister taxon, T. tufari, which previously has only been recorded from slightly further north at 21°30'S (
Thermiphione rapanui sp. n. differs from its sister taxon T. tufari in that it has 13 pairs of elytra instead of 14 pairs of elytra and the last pair of elytra are on segment 26 instead of segment 27 (compare dorsal photos of each in Figs
The topologies of the likelihood and parsimony phylogenies are similar to those recovered in the recent analyses of
The phylogeny demonstrates that our newly generated sequences for Thermiphione fijiensis represent the same species as the Thermiphione sp. published in
The distribution of the three East Pacific Rise iphionids sampled in this study (Table
Many thanks to Robert Vrijenhoek (MBARI) for inviting Greg Rouse on cruises to various Pacific hydrothermal vent localities. Thanks also to Nerida Wilson for help with sorting the samples that included T. rapanui n. sp., to Geoff Read who gave valuable advice on resolving Iphionella nomenclature, and to Charlotte Seid for her collections support. The crews of the R/V Melville, R/V Western Flyer, and the pilots of the ROVs Jason II and Doc Ricketts provided essential expertise, for which we are grateful. We would also like to thank an anonymous reviewer and Christina Piotrowski, as well as Zookeys editor Chris Glasby. Analysis of the specimens for this project was funded by the US National Science Foundation (NSF OCE-1634172).