Research Article |
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Corresponding author: Yun Bu ( buy@sstm.org.cn ) Academic editor: Megan Short
© 2025 Si-Qi Yang, Yun Bu, Nerivania Nunes Godeiro, Yan Gao, Ya-Li Jin.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Yang S-Q, Bu Y, Nunes Godeiro N, Gao Y, Jin Y-L (2025) A new species of Eudigraphis (Diplopoda, Polyxenida, Polyxenidae) from East China, with embryonic and post-embryonic development observations, and mitogenomic and genetic divergence analyses. ZooKeys 1247: 63-88. https://doi.org/10.3897/zookeys.1247.155348
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Eudigraphis huadongensis Yang & Bu, sp. nov. from east China is described and illustrated. The new species is compared with other congeners in detail and observations about its embryonic and post-embryonic development are provided. The complete mitochondrial genome of the new species is also analyzed, which represents the first published mitogenome of Polyxenida. The genetic divergence between E. huadongensis sp. nov. and its congeners was analyzed using Neighbor-Joining inference based on COI gene sequences. Eudigraphis huadongensis sp. nov. clustered with E. nigricans and E. kinutensis, supporting the morphological identification. The newly assembled mitogenome is 15,206 bp in length and its gene order is unique, possibly representing a pattern among Polyxenida species.
Bristle millipedes, mitochondrial genome, molecular analysis, taxonomy, stadium
Polyxenida Verhoeff, 1934, known as bristle millipedes, is a group of tiny diplopods with approximately 190 species recorded in the world (
During our soil fauna investigation in East China, plenty of bristle millipedes were obtained from Jiangsu, Shanghai, and Zhejiang. Among them, one species of the genus Eudigraphis was identified as new to science and it is described in the present paper. The embryonic and post-embryonic development of the new species was observed. The complete mitochondrial genome of the new species was also sequenced and analyzed, the first to be available for the order Polyxenida. The genetic divergence among species of the genus were analyzed using mitochondrial cytochrome c oxidase subunit 1 gene (COI).
Most of the specimens were collected from leaf litter under broad-leaf forest or bamboo forest using an entomological aspirator. Some were extracted from soil and litter samples by using Berlese-Tullgren funnels. Specimens were kept in absolute ethanol and frozen. Their habitats are shown in Fig.
Specimens were mounted on slides using Hoyer’s solution and dried in an oven at 50 °C. Morphological observations were performed under a phase contrast microscope (Leica DM 2500). Photographs were taken with a digital camera installed on the microscope (Leica DMC 4500). Specimens were measured from head to telson, excluding the caudal bundle of trichomes. The sex of specimens was identified by the presence of sex organs between the coxae of the second pair of legs. The specimens were prepared for taxonomic illustration following the technique of
Abbreviations used in the descriptions: b–trichome socket b on the dorsal side of the telson, BT–branched comb teeth, c–conical sensillum, c1, 2, 3–trichome sockets on the dorsal side of the telson, CT–simple comb teeth, FL–fimbriate lamella, IL–intermediate lobe, IS–intermediate sensillum, LP–lateral palp of gnathochilarium, MC–molar comb, MP–medial palp of the gnathochilarium, MPr–molar process, s–setiform sensillum, SaO–salivary ostiole, SL–serrate limb, SmL–smooth limb, SNHM–Shanghai Natural History Museum, Ta–anterior thick sensillum, Ti–intermediate thick sensillum, Tp–posterior thick sensillum.
The specimens used for the experiment were collected from several localities in east China from 2017 to 2023. Samples were preserved in absolute ethanol at -20 °C for DNA extraction. Prior to DNA extraction, each specimen was observed under a stereomicroscope to confirm the species identification. For whole genome sequencing, both specimens from Jiangsu and Shanghai preserved in alcohol were sent to Shanghai Yao’en Biotechnology Co., Ltd, China, where all laboratory procedures, including DNA extraction and library construction were made following custom procedures. DNA was extracted from a single individual of each specimen using the TIANamp MicroDNA extraction kit (Tiangen Co., Ltd, China). Libraries were constructed using KAPA Hyper Prep Kit (Roche). An Illumina NovaSeq platform was used to produce paired-end reads with 150 bp length. Approximately 10 Gb of data from each specimen was generated and used to assemble the mitogenomes. For COI gene fragments, total genomic DNA was extracted from one specimen with Promega genomic DNA purification kit following the manufacturer’s instructions. The primer pair LCO (5’-GGTCAACAAATCATAAAGATATTGG-3’), HCO (5’-TAAACTTCAGGGTGACCAAAAAATCA-3’) (
Using BBTools (sourceforge.net/projects/bbmap/), with the “clumpify.sh” and “bbduk.sh” pipelines, we analyzed the raw sequencing data to remove sequencing adapters, remove reads with low quality, remove contaminants and correct potential errors. The trimmed data were then analyzed using MitoZ v. 3.6 (
In order to analyze genetic divergences among species of Eudigraphis, 11 DNA barcodes from five populations of the new species were sequenced. 18 COI gene sequences of Polyxenida and two sequences of the families Lophoproctidae Silvestri, 1897 and Sphaerotheriidae Brandt, 1833 (outgroup) were downloaded from GenBank and analyzed. The detailed information and accession numbers of all sequences analyzed in this study are listed in Table
Taxonomic information, collection site, size, and GenBank accession number of the partial or complete sequences of COI of the species used in the analysis.
| Species and voucher | Family | Location | Length (bp) | GenBank Number | Reference |
|---|---|---|---|---|---|
| Eudigraphis huadongensis sp. nov. JS-WX-BY2021006 | Polyxenidae | China: Jiangsu | 1536 | PV243313 | present study |
| Eudigraphis huadongensis sp. nov. SH-TMS-BY2021005 | Polyxenidae | China: Shanghai | 1536 | PV243314 | present study |
| Eudigraphis huadongensis sp. nov. SH-TMS-BY2021005 | Polyxenidae | China: Shanghai | 658 | PV189309 | present study |
| Eudigraphis huadongensis sp. nov. SH-TMS-BY2021006 | Polyxenidae | China: Shanghai | 658 | PV189310 | present study |
| Eudigraphis huadongensis sp. nov. SH-TMS-BY2021007 | Polyxenidae | China: Shanghai | 658 | PV189311 | present study |
| Eudigraphis huadongensis sp. nov. SH-TMS-BY2021008 | Polyxenidae | China: Shanghai | 658 | PV189312 | present study |
| Eudigraphis huadongensis sp. nov. SH-TMS-BY2021009 | Polyxenidae | China: Shanghai | 658 | PV189313 | present study |
| Eudigraphis huadongensis sp. nov. WX-DJS-BY2021001 | Polyxenidae | China: Jiangsu | 658 | PV189314 | present study |
| Eudigraphis huadongensis sp. nov. WX-DJS-BY2021002 | Polyxenidae | China: Jiangsu | 658 | PV189315 | present study |
| Eudigraphis huadongensis sp. nov. WX-DJS-BY2021004 | Polyxenidae | China: Jiangsu | 658 | PV189316 | present study |
| Eudigraphis huadongensis sp. nov. ZJ-HZ-BY2023004 | Polyxenidae | China: Zhejiang | 658 | PV189317 | present study |
| Eudigraphis huadongensis sp. nov. SZ-LYS-BY2023022 | Polyxenidae | China: Jiangsu | 658 | PV189318 | present study |
| Eudigraphis huadongensis sp. nov. SZ-STH-BY2023003 | Polyxenidae | China: Jiangsu | 658 | PV189319 | present study |
| Eudigraphis nigricans CZHZS3 | Polyxenidae | China: Zhejiang | 633 | PQ141065 |
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| Eudigraphis nigricans E001 | Polyxenidae | Japan | 602 | LC010874 | Niikura 2014 (Unpublished) |
| Eudigraphis sinensis CZHZS1 | Polyxenidae | China: Zhejiang | 646 | PQ142931 |
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| Eudigraphis sinensis CZNJS1 | Polyxenidae | China: Jiangsu | 647 | PQ142932 |
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| Polyxenus hangzhoensis CZCZS1 | Polyxenidae | China: Anhui | 666 | PQ142930 |
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| Eudigraphis nigricans Di41 | Polyxenidae | Japan | 534 | LC456731 |
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| Eudigraphis nigricans Di1 | Polyxenidae | Japan | 534 | LC456732 |
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| Eudigraphis nigricans Di60 | Polyxenidae | Japan | 534 | LC456750 |
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| Eudigraphis kinutensis Di38 | Polyxenidae | Japan | 534 | LC456729 |
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| Eudigraphis kinutensis Di51 | Polyxenidae | Japan | 534 | LC456744 |
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| Eudigraphis kinutensis Di16 | Polyxenidae | Japan | 534 | LC456735 |
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| Eudigraphis takakuwai Di57 | Polyxenidae | Japan | 534 | LC456748 |
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| Eudigraphis takakuwai Di58 | Polyxenidae | Japan | 534 | LC456749 |
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| Eudigraphis takakuwai Di36 | Polyxenidae | Japan | 534 | LC456727 |
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| Eudigraphis takakuwai Di43 | Polyxenidae | Japan | 534 | LC456738 |
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| Eudigraphis takakuwai Di48 | Polyxenidae | Japan | 534 | LC456742 |
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| Eudigraphis takakuwai Di8 | Polyxenidae | Japan | 534 | LC456733 |
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| Eudigraphis takakuwai Di45 | Polyxenidae | Japan | 534 | LC456740 |
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| Lophoturus sineprecessus CZYNS1 | Lophoproctidae | China: Yunnan | 625 | PQ142933 |
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| Sphaerotheriidae sp. HYS-2012 | Sphaerotheriidae | China: Zhejiang | 1536 | NC_018361 |
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Class Diplopoda de Blainville in Gervais 1844
Subclass Penicillata Latreille, 1831
Order Polyxenida Verhoeff, 1934
Family Polyxenidae Lucas, 1840
Subfamily Monographinae Condé, 2008
Eudigraphis japonica Silvestri, 1948 (= Eudigraphis takakuwai); type locality: Ehime-ken and Kanagawa of Japan.
Head with eight ommatidia on each side. Body with ten segments, nine pleural projections, a telson, and 13 pairs of legs. Antenna with eight articles, the sixth antennal article has three long bacilliform sensilla, some species also have one conical sensillum and one setiform sensillum; the seventh antennal article has two long bacilliform sensilla, some species also have one conical sensillum and one setiform sensillum; eighth antennal article is shorter than article VII, with four finger-shaped sensory cones. Tergites with two lateral clusters of trichomes plus a single continuous row of trichomes close to posterior edge. Caudal trichomes on telson arranged as a penicil of hooked and barbate trichomes. The mandible has a comb-lobe, an intermediate plate, and a proximal plate, without a molar tuft.
China (Jiangsu, Shanghai, Taiwan, Yunnan, Zhejiang), Japan.
Holotype : • female (slide no. JS-WX-PX2022012) (SNHM), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2022-X-26, coll. Y. Bu. Paratypes (30 females, 11 males): • 1 female (slide no. JS-WX-PX2021001), 1 male (slide no. JS-WX-PX2021002), ibidem, 2021-VII-8, coll. Y. Bu; • 11 females (slides no. JS-WX-PX2022003–JS-WX-PX2022008, JS-WX-PX2022010–JS-WX-PX2022011, JS-WX-PX2022013–JS-WX-PX2022015), 1 male (slide no. JS-WX-PX2022009), ibidem, 2022-X-26, coll. Y. Bu; • 2 females (slides no. SH-TMS-PX2020001, SH-TMS-PX2020002), China, Shanghai, Tianma Mountain, alt. 99 m, 31°4’N,121°9’E, 2020-VII-31, coll. S. Q. Yang, Y. L. Jin & Y. Bu; • 3 female (slides no. SH-TMS-PX2021002, SH-TMS-PX2021003, SH-TMS-PX2021005), 1 male (slide no. SH-TMS-PX20210004), ibidem, 2021-IX-25, coll. Y. L. Jin, S. Q. Yang, Godeiro N. N. & Y. Bu; • 6 females (slides no. JS-SZ-PX2023004–JS-SZ-PX2023005, JS-SZ-PX2023007–JS-SZ-PX2023008, JS-SZ-PX2023013–JS-SZ-PX2023014), 6 males (slides no. JS-SZ-PX2023003, JS-SZ-PX2023006, JS-SZ-PX2023009–JS-SZ-PX2023012), Jiangsu Province, Suzhou, Shoutaohu Park, alt. 7 m, 31°17’N, 120°31’E, 2023-IV-14, coll. Y. Gao & Y. Bu; • 5 females (slides no. JS-SZ-PX2023023–JS-SZ-PX2023027), Jiangsu Province, Suzhou, Lingyan Mountain, alt. 30 m, 31°16’N, 120°31’E, 2023-IV-15, coll. Y. Gao & Y. Bu; • 2 females (slides no. ZJ-HZ-PX2023004–ZJ-HZ-PX2023005), 2 males (slides no. ZJ-HZ-PX2023009–ZJ-HZ-PX2023010), Zhejiang Province, Huzhou, Changxing, alt. 211 m, 31°1’N, 119°47’E, 2023-IV-30, coll. Y. Gao & Y. Bu.
Stadium I : • 7 individuals (slides no. SH-TMS-2020004–SH-TMS-20200010), China, Shanghai, Tianma Mountain, alt. 99 m, 31°4’N, 121°9’E, 2020-VII-31, coll. Y. L. Jin & S. Q. Yang. Stadium II: • 3 individuals (slides no. JS-WX-PX2018023–JS-WX-PX2018025), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2018-X-8, coll. Y. Bu; • 1 individual (slide no. JS-TMS-PX2018036), China, Shanghai, Tianma Mountain, alt. 99 m, 31°4’N,121°9’E, 2020-VII-31, coll. Y. Bu; • 2 individuals (slides no. JS-WX-PX2021005, JS-WX-PX2021008), ibidem, 2021-VII-8, coll. Y. Bu; Stadium III: • 6 individuals (slides no. JS-WX-PX2021014–JS-WX-PX2021019), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2021-IX-3, coll. Y. Bu. Stadium IV: • 5 individuals (slides no. JS-WX-PX2018014–JS-WX-PX2018018), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2018-X-8, coll. Y. Bu; • 1 individual (slide no. JS-WX-PX2021011), ibidem, 2021-IX-3, coll. Y. Bu. Stadium V: • 6 individuals (slides no. JS-WX-PX2018006–JS-WX-PX2018011), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2018-X-8, coll. Y. Bu. Stadium VI: • 3 individuals (slides no. JS-WX-PX2018004, JS-WX-PX2018005, JS-WX-PX2018012), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2018-X-8, coll. Y. Bu. Stadium VII: • 2 females (slides no. JS-WX-PX2018001, JS-WX-PX2018003), 1 male (slide no. JS-WX-PX2018002), China, Jiangsu Province, Wuxi, Daji Mountain, alt. 5 m, 31°32’N, 120°12’E, 2018-X-8, coll. Y. Bu; • 1 female (slide no. SH-XSS-PX2017001), China, Shanghai, Sheshan Mountain, alt. 100 m, 31°6’ N, 121°12’E, 2017-V-10, coll. Y. Bu & Y. L. Jin.
Eudigraphis huadongensis sp. nov. is characterized by three long bacilliform sensilla, one conical sensillum and one setiform sensillum on the sixth antennal article, two long bacilliform sensilla, one conical sensillum and one setiform sensillum on seventh antennal article; posterior vertex trichome groups with 11–16 sockets in anterior row and 7–13 sockets in posterior row; 12 slender sensilla on lateral palp of gnathochilarium and 20 or 21 conical sensilla on the medial palp; 2+2 lamellae and 5+5 clypeo-labral setae on the labrum. The mandible has 14 branched comb teeth, ten rows of simple comb teeth, three longitudinal groups of intermediate sensilla, 14 serrate limbs, one smooth limb, 13 salivary ostioles, seven molar processes and seven molar combs. The leg setae have a coniform pleated base. The telson has 11–17 ornamental trichomes on each side dorsal to the caudal bundle; hooked caudal trichomes with a maximum of eight hooks.
Adult with 13 pairs of legs, body length 3.4 mm on average (3.0–3.6 mm, n = 45, holotype 3.4 mm), caudal bundle 0.4–0.5 mm (Fig.
Coloration. Body evenly yellowish brown dorsally, pale yellow ventrally. Head with one dark brown transverse band on vertex connecting with red-brown eyes. Antenna with articles IV–VIII dark brown, with the basal three articles milky white. Legs variable in color, with last four or five podomere sections pale purple, basal sections white or purple. Body trichomes yellow-brown and caudal bundle trichomes grey to brown (Figs
Head
length 314 μm on average (270–450 μm, n = 45), width 500 μm on average (400–600 μm, n = 45) (Fig.
Antennae
length 420 μm on average (400–500 μm, n = 45), consist of eight antennal articles, article VIII shorter than VII (Fig.
Eudigraphis huadongensis sp. nov. Holotype. A. Sensilla on antennal articles VI and VII; B. Gnathochilarium (MP–medial palp; LP–lateral palp); C. Typical setae of coxa, prefemur, and femur; D. Pointed seta on tarsus II; E. Leg 3, right side (cx–coxa; pref–prefemur; f–femur; postf–post-femur; ti–tibia; t1, 2–tarsus 1, 2); F. Short seta on femur and tibia; G. Telotarsus-claw (s–setiform process; c–claw; p–posterior lateral process; l–lamella process); H. Pattern of insertions of dorso-medial trichomes on telson. Abbreviations: c–conical sensillum; s–setiform sensillum;Ta–thick anterior sensillum; Ti–thick intermediate sensillum; Tp–thick posterior sensillum. Scale bars: 50 μm (A, B, E, H); 20 μm (C, D, F, G).
Eudigraphis huadongensis sp. nov. A. Head, dorsal view; B. Ommatidia of right eye; C. Left antenna; D. Trichobothria a, b, c on head, left side; E. Labrum; F. Antennal articles VI and VII; G. Posterior vertex trichome sockets, left side; H. Posterior vertex trichome sockets, right side; I. Gnathochilarium; J. Prefemur (pref) and femur (f) of leg 5, showing setae; K. Tarsus 2 (t2). Abbreviations: LP–lateral palp; MP–medial palp; c–conical sensillum; s–setiform sensillum; a–thick anterior sensillum; Ti–thick intermediate sensillum; Tp–thick posterior sensillum. Scale bars: 50 μm (A, C); 20 μm (B, D–K).
Trichobothria. Trichobothrium a (posterior position), trichobothrium b (lateral position), and trichobothrium c (anterior position) with narrow cylindrical funicles, with sockets of equal size, forming an isosceles triangle with equal distance between ab and bc (Figs
Labrum. Surface heavily covered by coarse granules, anterior margin with 2+2 lamellae on each side of the median cleft, clypeo-labrum with 5+5 short setae, 18–27 μm (Fig.
Gnathochilarium. Lateral palp (90–107 μm) 2.1–2.3 times as long as medial palp (40–50 μm), each medial palp (MP) with 20 conical or slender sensilla, lateral palps (LP) each with 12 conical sensilla (Figs
Mandible. Comb-lobe with a row of 14 branched comb teeth (BT) and ten rows of simple comb teeth (CT) (Fig.
Eudigraphis huadongensis sp. nov. mandible. A. Overall view; B. Comb-lobe; C. Proximal plate showing 13 salivary ostioles (SaO); D. Intermediate lobe and proximal plate showing fine structures Abbreviations: FL–fimbriate lamella; IS–intermediate sensillum; MC–molar comb; MPr–molar process; SL–serrate limb; SmL–smooth limb. Scale bars: 50 μm.
Trunk
composed of ten tergites, nine pleural projections and telson (Fig.
Number of trichome sockets on tergites of Eudigraphis huadongensis sp. nov. (holotype in brackets).
| Tergites | Number of sockets (n = 45) |
|---|---|
| I | 86–103 (98) |
| II | 103–132 (123) |
| III | 103–124 (119) |
| IV | 109–132 (114) |
| V | 120–144 (129) |
| VI | 110–151 (134) |
| VII | 112–145 (124) |
| VIII | 104–144 (126) |
| IX | 94–132 (108) |
| X | 64–110 (76) |
Eudigraphis huadongensis sp. nov. A. Collum; B. Tergite II; C. Tergite; X. And telson, showing trichomes; D. Trichome sockets of collum, left side; E. Ornamental trichome sockets of telson, left side; F. Female genital vulvae; G. Male penis; H. Eye and trichobothria under scanning electronic microscope; I. Antennal articles VI and VII; J. Telotarsus-claw. Abbreviations: c–claw; l–lamella process; p–posterior lateral process; s–setiform process. Scale bars: 50 μm (A–C, F–G); 20 μm (D–E, H–J).
Legs. Leg 1 lacks tarsus 1. Chaetotaxy (setae on each leg article) (Table
Leg chaetotaxy of Eudigraphis huadongensis sp. nov. (holotype in brackets).
| Legs | Podomeres | ||||||
|---|---|---|---|---|---|---|---|
| coxa | prefemur | femur | post-femur | tibia | tarsus 1 | tarsus 2 | |
| 1 | 1 (1) a | 1 (1) a | 1(1) a | - | 1 (1) c | / | 1 (1) d |
| 2 | 2 (2) | 1 (1) | 2(2) b | - | 1 (1) | - | 1 (1) |
| 3 | 2–3 (3) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 4 | 2–4 (4) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 5 | 2–4 (2) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 6 | 2–3 (3) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 7 | 2–3 (2) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 8 | 2–3 (2) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 9 | 2–3 (2) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 10 | 2 (2) | 1 (1) | 2(2) | - | 1 (1) | - | 1 (1) |
| 11 | 1–2 (1) | 1 (1) | 2(2) | - | 0–1 (0) | - | 1 (1) |
| 12 | 1–2 (1) | 1 (1) | 2(2) | - | 0–1 (0) | - | 1 (1) |
| 13 | 0–2 (0) | 1 (1) | 1–2 (2) | - | 0–1 (0) | - | 1 (1) |
Telotarsus short, with a robust and pointed claw, narrow posterior lateral process, equal to half length of claw, anterior setiform process longer than claw, and a large, triangular lamella (Figs
Sex organ. Female with paired genital vulvae between coxa of leg 2, each consists of three plates: one large upper plate with six short setae, two small lower plates each with five setae (Fig.
Telson. Ornamental trichomes arranged either side dorsal to the caudal bundle (Fig.
Caudal bundles
composed of a bundle of uniform, long hooked trichomes (Fig.
Among 52 adults observed, the number of trichomes on head, tergites, and telson are fairly variable and usually asymmetrical. The posterior of the vertex varied with 11–16 sockets in anterior row and 7–13 in posterior row. The ornamental trichomes showed asymmetry between sides: 12+14 in one specimen, 13+12 in two specimens, 15+14 in four specimens, 16+17 in two specimens and 13+16 in one specimen. The clypeo-labrum with 6+6 setae was observed in two specimens, 5+4 setae in five specimens, 4+4 setae in five specimens. Medial palp gnathochilarium with 21+21 conical sensilla was observed in five specimens. On the female genital vulvae, 7–11 setae were observed on the upper plate in ten specimens instead of more common six setae, and six setae (instead of five) on one of the lower plates in five specimens.
The species was named after the Chinese words “Huadong” = “East China” which is the region where all type specimens were collected.
Eudigraphis huadongensis sp. nov. is similar to E. sinensis, E. xishuangbanna, and E. taiwaniensis in having the same number of sensilla on antennal articles VI and VII, similar body color, and same number of sensilla on the medial palp of gnathochilarium. They can be distinguished by the number of sensilla on the lateral palp of gnathochilarium (12 in E. huadongensis sp. nov. and E. taiwaniensis vs 13 in E. sinensis, 17 in E. xishuangbanna), mandible structures (one smooth limb on proximal plate in E. huadongensis sp. nov. vs two or three in others), labrum (with 2+2 lamellae in E. huadongensis sp. nov. and E. taiwaniensis vs 3+3 in E. sinensis, 3+3 or 4+4 in E. xishuangbanna), shape of large seta on legs (coniform base without other affiliated structures in E. huadongensis sp. nov. vs oval base with spines, pubescence, or processes in Eudigraphis species), and number of hooks on caudal trichome (maximum eight in E. huadongensis sp. nov. vs maximum four or five in others). All seven species of the genus Eudigraphis are compared in Table
Comparison of world species of genus Eudigraphis. Abbreviations used are explained in Materials and methods.
| Characters | E. huadongensis sp. nov. | E. sinensis | E. xishuangbanna | E. taiwaniensis | E. takakuwai | E. nigricans | E. kinutensis | |
|---|---|---|---|---|---|---|---|---|
| Distribution | China (Jiangsu, Shanghai, Zhejiang) | China (Jiangsu, Zhejiang) | China (Yunnan) | China (Taiwan) | Japan | China (Zhejiang, Jiangsu); Japan | Japan | |
| Body length (mm) | 3.0–3.6 | 2.4–2.8 | 3.5–4.0 | 2.9–3.3 | 3.8–4.5 | 3.0–4.2 | 2.5–3.0 | |
| Coloration | evenly yellowish brown | evenly yellowish brown | ? | body yellowish brown | body cream yellow | head black, body dorsally cream yellow with two rows of blackish brown stripes | body gray | |
| Habitats | forest floor | under the bark of trees | under the bark of trees | forest floor | forest floor or under the bark of trees | sea cliffs in Japan; under the bark of a tree or in the litter of forests in China. | under the bark of trees | |
| Sensilla on antenna | article VI | Ta, s, Ti, Tp, c | Ta, s, Ti, Tp, c | Ta, s, Ti, Tp, c | Ta, s, Ti, Tp, c | Ta, Ti, Tp | Ta, Ti, Tp | Ta, Ti, Tp |
| article VII | Ta, s, Tp, c | Ta, s, Tp, c | Ta, s, Tp, c | Ta, s, Tp, c | Ta, Tp | Ta, Tp | Ta, Tp | |
| Mandible | comb lobe | 14 BT and 10 rows of CT | 11–12 BT and 6 rows of CT | 15 BT and 8 rows of CT | 14–15 BT and 10 rows of CT | 16 BT and 10 rows of CT | 13 BT and 8 rows of CT | 13 BT and 7 rows of CT |
| arrangement of IS | 3 longitudinal groups | 3 longitudinal groups | 3 longitudinal groups | 3 longitudinal groups | 3 longitudinal groups | 3 longitudinal groups | 3 longitudinal groups | |
| number of SL | 14 | 15–18 | 14 | 16–18 | 16 | 17 | 13 | |
| number of SmL | 1 | 2 | 3 | 2 | 3 | 2 | 5 | |
| number of SaO | 13 | 10–13 | 9 | 12–16 | 27 | 13 | 14 | |
| number of MPr | 7 | 8 | 7 | 7 | 7 | 8 | 8 | |
| number of MC | 7 | 5–7 | 6 | 8 | 9 | 5 | 6 | |
| Labrum | number of lamellae | 2+2 | 3+3 | 4+4 (3+3) | 2+2 | ? | 3+3 | ? |
| clypeo-labral setae | 5+5 | 6+6 | 5+5 (7+7) | 4+4 | 5+5 | 5+5 (6+6) | 7 | |
| Number of sockets on posterior vertex | anterior row | 11–16 | 11–13 | 13–19 | 20–27 | 10 | 20 | 20 |
| posterior row | 7–13 | 7–9 | 5–9 | 8–9 | ? | 10 | 8 | |
| Number of sensilla on Gnathochilarium | medial palp | 20–21 | 21 | 21 | 21 | 10 | 10 | ? |
| lateral palp | 12 | 13 | 17 | 12 | 12 | 12 | 7 | |
| Number of dorsal ornamental trichomes a | female | 11–17 | 9 | 14 | 15 | ? | 5 | ? |
| male | 11–13 | 5–6 | 5–6 | 12–13 | ? | 4 | ? | |
| Shape of large setae on legs | base coniform pleated | base oval, pleated with distal long spines | base oval, pleated with pubescence | base oval, pleated with two distal acute spinal processes | ? | base coniform, smooth | ? | |
| Number of hooks on caudal trichome | 3–8 | 3–4 | 2–5 | 3–4 | 3–4 | 3–6 | 3–5 | |
The living specimens of E. huadongensis sp. nov. from Jiangsu and Zhejiang were raised in the lab, and their embryonic development was observed and recorded. The females laid eggs in clusters and protected them with caudal trichomes (Fig.
Embryonic development of Eudigraphis huadongensis sp. nov. A. Adults and eggs; B. Eggs protected by caudal trichomes; C, D. Embryo of two weeks; E. Embryos with ommatidia pigments present; F. Embryos observed in the fourth week; G. Embryos and new-hatched juvenile; H. Juveniles of stadium I after 2 days; I. Juvenile of stadium I, showing brown caudal bundle.
Specimens of each stadium were mounted and observed under a microscope. The results indicate that the post-embryonic development of the present species is similar to E. taiwaniensis (Ishii, 1990), with seven juvenile stadia observed (Fig.
Morphology of each stadium and adults of Eudigraphis huadongensis sp. nov.
| Stadium | I | II | III | IV | V | VI | VII | Adult |
|---|---|---|---|---|---|---|---|---|
| Body length (mm) | 0.7–0.8 | 1.0–1.2 | 1.3–1.7 | 1.7–1.8 | 2.0–2.1 | 2.1–2.5 | 2.9–3.2 | 3.0–3.6 |
| Head length (μm) | 150–185 | 190–200 | 200–250 | 210–250 | 250–325 | 250 | 250–305 | 270–450 |
| Head width (μm) | 260–290 | 285–330 | 300–360 | 300–375 | 325–400 | 425–450 | 475–500 | 400–600 |
| Antenna length (μm) | 225–250 | 225–250 | 260–300 | 275–325 | 300–375 | 350–400 | 350–400 | 400–500 |
| Leg pairs | 3 | 4 | 5 | 6 | 8 | 10 | 12 | 13 |
| Number of tergites | 4 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
| Number of ommatidia | 5 | 5 | 7 | 8 | 8 | 8 | 8 | 8 |
| Antennal articles | 5 | 5 | 7 | 8 | 8 | 8 | 8 | 8 |
| Antennal sensilla | lack Ta on article III; article IV same as adult | lack Ta on article III; article IV same as adult | same number as adult, but with short Ta on article V; article VI as adult | Ta become longer on article VI; article VII as adult | same as adult | same as adult | same as adult | article VI with Ta, s, Ti, Tp, c; article VII with Ta, s, Tp, c |
| setae of Clypeo-labrum | 4+4 | 4+4 | 4+4 | 4+4 | 4+4 | 4+4 or 5+5 | 4+4 or 5+5 | 5+5, sometimes 4+4 |
| Number of sensilla on medial palp of gnathochilarium | 20 (21) | 20 (21) | 20 (21) | 20 (21) | 20 (21) | 20 (21) | 20 (21) | 20 (21) |
| Number of sensilla on lateral palp of gnathochilarium | 10 | 10 | 10 (12) | 12 | 12 | 12 | 12 | 12 |
| Number of trichomes on posterior vertex per side | a-row: 6–7; p-row: 3–4 | a-row: 7–8; p-row: 3–4 | a-row: 8–9; p-row: 4–5 | a-row: 8–10; p-row: 4–6 | a-row: 8–11; p-row: 5–9 | a-row: 10–11; p-row: 6–9 | a-row: 11–14; p-row: 7–8 | a-row: 11–16; p-row: 7–13 |
| Number of trichomes on collum per side | 10–14 | 13–17 | 19–20 | 21–27 | 30–33 | 31–39 | 34–41 | 43–52 |
| Number of trichomes on lateral protuberance of collum | 2–3 | 2–4 | 3 | 3–4 | 4 | 4–5 | 4–5 | 5–6 |
| Number of dorsal ornamental trichomes per side | 5–6 a, b, c1, c3 | 7–10 a, b, c1, c3 | 8–10 a, b, c1, c2, c3 | 10–14 a, b, c1, c2, c3 | 8–14 a, b, c1, c2, c3 | 11–17 a, b, c1, c2, c3 | 13–15 a, b, c1, c2, c3 | 11–17 a , b, c1, c2, c3, |
| Specimens examined | 7 | 6 | 7 | 8 | 6 | 3 | 4 | 45 |
The mitogenome of Eudigraphis huadongensis sp. nov. is a circular molecule of 15,206 bp in length. All typical 13 protein-coding genes, 22 tRNAs, two ribosomal RNA genes, and one control region were identified (Fig.
Features of the mitochondrial genome of Eudigraphis huadongensis sp. nov. The direction of coding strands is indicated by major strand (+) and minor strand (-).
| Eudigraphis huadongensis sp. nov. mitogenome length 15,206 bp | ||||||
|---|---|---|---|---|---|---|
| Start | End | Length (bp) | Direction | Type | Gene name | Start-stop codons |
| 0 | 171 | 171 | - | CDS | COX1 | ATG – TAA |
| 171 | 232 | 62 | - | tRNA | trnW(uca) | |
| 352 | 1250 | 899 | - | CDS | ND2 | ATA – T-- |
| 1250 | 1311 | 62 | - | tRNA | trnP(ugg) | |
| 1312 | 1374 | 63 | - | tRNA | trnY(gua) | |
| 1373 | 2291 | 919 | - | CDS | ND1 | TTG – TAG |
| 2285 | 2344 | 60 | - | tRNA | trnL(uaa) | |
| 2344 | 2404 | 61 | - | tRNA | trnL(uag) | |
| 2350 | 3737 | 1388 | - | rRNA | l-rRNA | |
| 3566 | 3628 | 63 | - | tRNA | trnV(uac) | |
| 3624 | 4413 | 790 | - | rRNA | s-rRNA | |
| 4386 | 4455 | 70 | + | tRNA | trnI(gau) | |
| 4456 | 4517 | 62 | + | tRNA | trnM(cau) | |
| 4517 | 4576 | 60 | + | tRNA | trnQ(uug) | |
| 4576 | 4852 | 277 | + | CDS | ND4L | ATT – TAA |
| 4817 | 6189 | 1373 | + | CDS | ND4 | ATG – --- |
| 6165 | 6225 | 61 | + | tRNA | trnH(gug) | |
| 6225 | 7916 | 1692 | + | CDS | ND5 | ATT – TA- |
| 7888 | 7950 | 63 | + | tRNA | trnF(gaa) | |
| 7950 | 8001 | 52 | + | tRNA | trnC(gca) | |
| 8002 | 8989 | 987 | Control region | |||
| 8990 | 9050 | 61 | - | tRNA | trnS(uga) | |
| 9053 | 10178 | 1126 | - | CDS | CYTB | ATG – TAA |
| 10161 | 10638 | 478 | - | CDS | ND6 | GTG – TAA |
| 10632 | 10694 | 63 | - | tRNA | trnT(ugu) | |
| 10694 | 10754 | 61 | - | tRNA | trnE(uuc) | |
| 10754 | 10821 | 68 | - | tRNA | trnS(gcu) | |
| 10821 | 10884 | 64 | - | tRNA | trnN(guu) | |
| 10883 | 10946 | 64 | - | tRNA | trnR(ucg) | |
| 10945 | 11011 | 67 | - | tRNA | trnA(ugc) | |
| 11009 | 11357 | 349 | - | CDS | ND3 | ATT – TAG |
| 11360 | 11422 | 63 | - | tRNA | trnG(ucc) | |
| 11399 | 12206 | 808 | - | CDS | COX3 | ATG – TAA |
| 12209 | 12884 | 676 | - | CDS | ATP6 | ATG – TAA |
| 12877 | 13033 | 157 | - | CDS | ATP8 | GTG – TAG |
| 13033 | 13096 | 64 | - | tRNA | trnD(guc) | |
| 13094 | 13160 | 67 | - | tRNA | trnK(cuu) | |
| 13160 | 13841 | 682 | - | CDS | COX2 | ATG – TAA |
| 13841 | 15206 | 1365 | - | CDS | COX1 | ATG – TAA |
Circular representation of the mitogenome of Eudigraphis huadongensis sp. nov. The innermost circle shows the GC content; the middle circle shows the reads coverage, and the outermost circle shows the gene features, rRNA (yellow), tRNA (red), and CDS (dark blue). The photo in the center represents a live specimen.
Comparison of gene arrangements in mtDNA of nine Diplopoda species, including Eudigraphis huadongensis sp. nov. (in bold). Prionobelum sp. shares the ancestral arthropod ground pattern. Gene segments are not drawn to scale. Genes highlighted in pink have different relative positions compared to the ancestral arthropod ground pattern. Underlining indicates the gene is encoded on the opposite strand. CR: putative control region. (Figure adapted from
After alignment of all available COI gene sequences, two data sets were obtained: one close to 5’-end includes 642 base pairs, another one close to 3’-end includes 534 base pairs in total, which were analyzed separately. The results indicated that the COI gene of the new species was fairly conserved among populations: all sequences of individuals collected from five localities were completely the same. The Neighbor-Joining trees supported that E. huadongensis sp. nov. is a unique species different from other congeners (Figs
The genetic distances between E. huadongensis sp. nov. and other congeners are: 0.1624 on average (0.1509–0.1668) for 5’-end fragments, and 0.1323 on average (0.1151–0.1601) for 3’-end fragments, which are distinctly higher than conspecific distances of the genus 0.0269 on average (0–0.0625), and well match the spans of interspecific distances within the genus 0.1552 on average (0.1151–0.1765).
Eudigraphis huadongensis sp. nov. is the fifth Chinese species of this genus and is widely distributed in East China. It lives in the litter, humus, or the upper layer of soil of different kinds of forests, never dwelling under tree bark. Our experience of collection indicated that it prefers a relatively dry environment, with high density in dry litter. It has a cylindrical body that is similar to E. taiwaniensis, different to the species under tree bark that have flat bodies such as E. sinensis and E. nigricans.
After detailed comparison of all known species of the genus, we found that the body color, sensilla on the antennae, structures of the mandible, labrum, sensilla on palps of gnathochilarium, and the shape of setae on legs are good diagnostic characters for species separation (Table
There are few molecular data available for Polyxenida and no previous mitochondrial genome has been determined for the order. We sequenced the complete mitochondrial genome of Eudigraphis huadongensis sp. nov. and compared it with that of other diplopods. Its gene order is exclusive and new studies are necessary to investigate if the model found here is diagnostic for the Polyxenida group. The genetic distances of COI gene indicated that E. huadongensis sp. nov. can be well separated from other congeners, further supporting our morphological identification.
We sincerely thank Professor Xiao-Juan Wang for her generous help in the preparation of SEM images. Special thanks are given to Dr Sergei Golovatch (Russia) and Dr Megan Short (Australia) for their valuable comments during the review of this manuscript.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No use of AI was reported.
This study was supported by the National Natural Science Foundation of China (32170471, 32370491, 32300376) and the Basic Research Foundation of Shanghai Science & Technology Museum.
Conceptualization: YB. Data curation: NNG, SQY. Formal analysis: NNG. Funding acquisition: YG, YB. Investigation: NNG, YB, YLJ, YG, SQY. Methodology: SQY, NNG, YB. Project administration: YB. Resources: YLJ, YG, SQY. Software: NNG. Supervision: YB. Validation: NNG, YB, SQY. Visualization: NNG, SQY. Writing - original draft: SQY, YB, NNG. Writing - review and editing: YLJ, NNG, YB, SQY, YG.
Si-Qi Yang https://orcid.org/0009-0000-4331-792X
Yun Bu https://orcid.org/0000-0002-7177-9686
Nerivania Nunes Godeiro https://orcid.org/0000-0002-1669-6124
Yan Gao https://orcid.org/0000-0003-0305-3696
Ya-Li Jin https://orcid.org/0009-0003-5773-2165
All of the data that support the findings of this study are available in the main text.