Research Article |
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Corresponding author: Hsi-Te Shih ( htshih@dragon.nchu.edu.tw ) Academic editor: Sameer Pati
© 2025 Jhih-Wei Hsu, Jose Christopher E. Mendoza, Hsi-Te Shih.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Hsu J-W, Mendoza JCE, Shih H-T (2025) A new species of Ptychognathus Stimpson, 1858, from East and Southeast Asia, previously identified as Ptychognathus barbatus (A. Milne-Edwards, 1873) (Crustacea, Decapoda, Brachyura, Varunidae). ZooKeys 1243: 269-288. https://doi.org/10.3897/zookeys.1243.152263
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The brackish-water crabs of the genus Ptychognathus Stimpson, 1858, currently the most diverse genus within the family Varunidae, typically inhabit estuaries or seashores influenced by freshwater. Among the species in this genus, a commonly recorded species identified as Ptychognathus barbatus (A. Milne-Edwards, 1873) has been recorded across the western Pacific, including Japan, Taiwan, China, the Philippines, Malaysia, Indonesia, and New Caledonia (type locality). However, some previous studies suggested that most of these records do not represent the true P. barbatus. The present study reexamines these records and specimens and describes a new species, P. dajie sp. nov., from East and Southeast Asia, based on morphological differences and genetic data from mitochondrial cytochrome c oxidase subunit 1 (COI). This new species is similar to its congeners but can be distinguished by the features of the carapace, the setation of ambulatory legs, and male first gonopods. In addition, the intraspecific distances of P. dajie sp. nov. are below 0.77%, while the interspecific distances between this new species and other species are larger than 11.89%.
description, mitochondrial cytochrome c oxidase subunit I, morphology, Ptychognathus dajie sp. nov.
Ptychognathus Stimpson, 1858, is currently the most speciose genus within the family Varunidae H. Milne Edwards, 1853, with a wide distribution across the Indo-West Pacific. To date, a total of 32 species of Ptychognathus have been described (
Ptychognathus barbatus (A. Milne-Edwards, 1873) was originally described as Gnathograpsus barbatus A. Milne-Edwards, 1873, based on specimens from New Caledonia (see A.
In recent years, several studies on Ptychognathus have used molecular analyses to assist in species differentiation, demonstrating that the COI (cytochrome c oxidase subunit I) gene is useful for the classification and identification of most Ptychognathus species. This marker has also been effective in confirming more significant intraspecific morphological variation in some species (
The examined specimens are deposited in the Zoological Collections of the Department of Life Science, National Chung Hsing University, Taichung, Taiwan (
The collection sites of Ptychognathus dajie sp. nov. in East and Southeast Asia. Solid symbols mean collection sites of specimens used in present study; empty symbols mean the additional records only from references. 1–11 refer to Table
The following abbreviations are used in present study: CW = carapace width, CL = carapace length; P2–P5 = first to fourth ambulatory legs; G1 = male first gonopod; G2 = male second gonopod; ovig. = ovigerous.
Genomic DNA was isolated from the muscle tissue of legs, gills, or eggs by using the GeneMark tissue and cell genomic DNA purification kit (Taichung, Taiwan). A portion of the COI gene was amplified with PCR using the primers LCO1490 (5’-GGTCAACAAATCATAAAGATATTGG-3’), HCO2198 (5’-TAAACTTCAGGGTGACCAAAAAATCA-3’) (
The haplotypes of the cytochrome c oxidase subunit I (COI) for the specimens of Ptychognathus species used in present study. The numbers in parentheses following the localities indicate the collection sites, corresponding to those shown in Fig.
| Species | Locality | Sample size | Accession number | References |
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| P. dajie sp. nov. | Taiwan: Fubao, Changhua [1] | 1 | MW000767 |
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| Taiwan: Watong, Baisha, Penghu [2] | 1 | MW000768 |
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| Taiwan: Baoli R. estuary, Pingtung [3] | 1 | MW000768 |
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| Taiwan: Dulanwan, Taitung [4] | 1 | MW000767 |
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| Taiwan: Shanyuan, Taitung [5] | 1 | MW000768 |
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| Taiwan: Shanyuan, Taitung [5] | 1 | MW000767 |
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| Taiwan: Jihuei, Taitung [6] | 1 | MW000767 |
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| Taiwan: Yanliao, Hualien [7] | 1 | MW000769 |
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| Taiwan: Dasi R. estuary, Yilan [8] | 1 | MW000767 |
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| Japan: Benoki, Okinawa Island [9] | 1 | PV557377 | present study | |
| Philippines: Camiguin Island [10] | 1 | PV557378 | present study | |
| Philippines: Camiguin Island [10] | 1 | MW000770 | present study | |
| Indonesia: Bali [11] | 1 | MW000770 |
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| P. guijulugani | Indonesia: Bali | 1 | PV557376 | present study |
| P. pusillus | Australia: Dolly Beach, Christmas Island | 1 | PP294706 |
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| P. amikee | Vanuatu: Kirilou River, Gaua Island | 1 | PP294699 |
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| Vanuatu: Kirilou River, Gaua Island | 1 | PP294700 |
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| P. takahasii | Taiwan: Jihuei, Taitung | 1 | MW000786 |
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| P. insolitus | Taiwan: Houwan, Pingtung | 1 | MW000774 |
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| Taiwan: Houwan, Pingtung | 1 | MW000775 |
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| P. similis | Wallis & Futuna (France): Futuna Island | 1 | OR864756 |
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| Wallis & Futuna (France): Futuna Island | 1 | OR864757 |
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| P. hachijoensis | Taiwan: Chaishan, Kaohsiung | 1 | MW000771 |
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| Taiwan: Houwan, Pingtung | 1 | MW000772 |
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| Taiwan: Jioupeng, Pingtung | 1 | MW000773 |
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| P. ngankeeae | Wallis & Futuna (France): Futuna Island | 1 | OR864752 |
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| Wallis & Futuna (France): Futuna Island | 1 | OR864753 |
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| P. barbatus | New Caledonia: Grande Terre Island | 1 | OR864745 |
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| P. stimpsoni | Taiwan: Wanlitong, Pingtung | 1 | MW000782 |
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| Philippines: Camiguin | 1 | MW000784 |
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| Philippines: Camiguin | 1 | MW000783 |
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| Philippines: Camiguin | 1 | MW000785 |
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| P. sakaii | Taiwan: Dingtanzih, Pingtung | 2 | MW000787 |
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| P. lipkei | Taiwan: Yeyin, Lanyu Island | 1 | PP294702 |
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| Taiwan: Yeyin, Lanyu Island | 1 | PP294703 |
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| Taiwan: Yeyin, Lanyu Island | 1 | PP294704 |
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| P. glaber | Japan: Ogasawara (Bonin)Islands | 1 | PP272962 |
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| P. ishii | Taiwan: Dulanwan, Taitung | 1 | MW000778 |
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| Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000776 |
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| Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000777 |
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| P. riedelii | Philippines: Cebu Island | 1 | PP294705 |
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| Philippines: Cebu Island | 1 | PP272963 |
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| P. pilosus | Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000781 |
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| P. altimanus | Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000764 |
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| Taiwan: Linbian R. estuary, Pingtung | 1 | MW000765 |
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| Indonesia: Cilacap, Central Java | 1 | OQ852797 |
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| Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000763 |
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| Taiwan: Linbian R. estuary, Pingtung | 1 | MW000766 |
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| P. makii | Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000779 |
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| Taiwan: Gangkou R. estuary, Pingtung | 1 | MW000780 |
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| P. crassimanus | French Polynesia: Fatu Hiva Island | 1 | OR864744 |
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| French Polynesia: Fatu Hiva Island | 1 | OR864760 |
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| French Polynesia: Fatu Hiva Island | 1 | OR864759 |
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| French Polynesia: Fatu Hiva Island | 1 | OR864751 |
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| French Polynesia: Fatu Hiva Island | 1 | OR864742 |
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| French Polynesia: Fatu Hiva Island | 1 | OR864750 |
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| P. easteranus | French Polynesia: Tahiti | 1 | OR864766 |
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| French Polynesia: Tahiti | 1 | OR864767 |
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| French Polynesia: Mangareva Island | 1 | OR864763 |
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| French Polynesia: Rapa Island | 1 | OR864755 |
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| French Polynesia: Rapa Island | 1 | OR864765 |
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| French Polynesia: Tahiti | 1 | OR864748 |
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| French Polynesia: Rurutu Island | 1 | OR864746 |
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| French Polynesia: Tahiti | 1 | OR864749 |
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| French Polynesia: Mangareva Island | 1 | OR864762 |
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| French Polynesia: Rapa Island | 1 | OR864764 |
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| French Polynesia: Rapa Island | 1 | OR864754 |
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| French Polynesia: Rapa Island | 1 | OR864761 |
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A neighbor-joining (NJ) tree for COI sequences was constructed using the
Family Varunidae H. Milne Edwards, 1853
Subfamily Varuninae H. Milne Edwards, 1853
Genus Ptychognathus Stimpson, 1858
Ptychognathus barbatus
–
Ptychognathus aff. barbatus
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Cognatus cavaterminus NK Ng, 2006: 387, figs 107, 108 (unpublished MS name), nomen nudum.
Cognatus benokiensis NK Ng, 2006: 392 (unpublished MS name), nomen nudum.
Holotype. Malaysia • 1 male (13.2 × 11.6 mm); Pahang, Tioman Island, Paya River; 7–12 Sep. 2002;
Japan • 9 males (15.5 × 13.8–9.5 × 8.8 mm), 4 females (12.0 × 11.0–9.0 × 8.4 mm), 1 ovig. female (10.8 × 9.7 mm); Ryukyu Islands, Okinawa, Miyako, Urasoko; 11 Apr. 2002;
Ptychognathus amikee Hsu & Shih, 2024: VANUATU • 1 male (holotype, 15.8 × 13.6 mm); Gaua Island, Kirilou River; 18 Jul. 2005; MNHN-B29852. 1 female (paratype, 17.4 × 14.6 mm), Gaua Island, Lembot River; 20 July 2005; MNHN-B29853. Ptychognathus barbatus (A. Milne-Edwards, 1873): FRANCE • 4 males (10.2 × 8.5–8.6 × 7.3 mm), 3 females (8.5 × 6.9–7.0 × 6.1 mm); New Caledonia; 8 Nov. 2006;
Carapace (Figs
Ptychognathus dajie sp. nov. A, B. Holotype male (13.2 × 11.6 mm,
Ptychognathus dajie sp. nov. A–C, E, G–I, K–P. Holotype male (13.2 × 11.6 mm,
Carapace (Figs
Supraorbital margins lined with small granules. Anterolateral margin with three teeth including external orbital tooth; first tooth (external orbital tooth) largest, broad, bluntly triangular, slightly sloping forward; second tooth distinct, bluntly triangular; third tooth smallest, sometimes small but distinct or indicated by a small notch in small individuals. Posterolateral margins convergent posteriorly, covered with dense setae; posterolateral regions covered with dense setae near margins. Infraorbital ridge consisting of several small, rounded granules. Epistome broad, median part triangular.
Third maxillipeds (Figs
Chelipeds (Fig.
Ambulatory legs (Figs
Male pleon (Fig.
G1 (Fig.
Female vulvae (Fig.
The coloration of this new species is highly variable, so color is not a reliable characteristic for identification. The body color often resembles the color of the habitat substrate. Common body colors include dark brown or grayish black (Fig.
This species primarily inhabits estuaries or freshwater downstream areas influenced by tide, often sheltering under stones or pebbles in shallow waters or near the water. Its habitat is diverse, including sandy bottoms, coral sand, and rocky shores. Ptychognathus dajie sp. nov. frequently coexists with other Ptychognathus species in similar habitat environments. In Taiwan, this species has been observed to be sympatric with several species, such as P. insolitus, P. ishii, P. lipkei, P. sakaii, P. stimpsoni, and P. takahasii.
Largest male 20.2 × 16.8 mm (
Malaysia (Tioman) (type locality), Japan (Kochi, Ehime, Kanagawa, Izu Islands, and Ryukyu Islands), Taiwan, China (Guangdong), the Philippines (Negros, Cebu, and Camiguin), Indonesia (Sumatra, Ternate, and Bali Island); and Thailand (Phuket) (
The species is named in honor of the late Dr. Ngan Kee Ng, who focused on this varunid group as part of her doctoral research. The specific epithet dajie, in Chinese, is a form of address to a senior woman in a leadership or caretaker role, similar to “big sister” or “senior sister”. Used as a noun in apposition.
Ptychognathus dajie sp. nov. is morphologically similar to a group of species within Ptychognathus, viz. P. barbatus, P. glaber, P. guijulugani, P. ngankeeae De Mazancourt, Mazel, Marquet, Poupin & Keith, 2024, P. pusillus, P. sakaii, and P. stimpsoni, in the following features: small body size, subquadrate carapace, and ambulatory legs without densely long setae. Nonetheless, the new species can be distinguished from these congeners primarily by the shape of the male telson and the pattern of setation in the ambulatory legs and male telson. The morphology of the male telson in P. dajie sp. nov., in particular, is rather unique in the genus in that the distal margin of male telson is obviously concave and with a distinct tuft of setae (Figs
Ptychognathus dajie sp. nov. can be further differentiated from other congeners by the form of the carapace and the setation of the ambulatory legs. In P. dajie sp. nov., there are three obvious anterolateral teeth (including the external orbital tooth) on the carapace, and the second tooth is distinct and bluntly triangular (Fig.
Although P. dajie sp. nov. and four other closely allied species (P. barbatus, P. guijulugani, P. pusillus, and P. stimpsoni) all have a similar carapace, including shape and anterolateral teeth morphology, they can be distinguished by the setation of the ambulatory legs. In P. stimpsoni, the surface near the anterior margins of the ambulatory carpi and propodi is covered with dense, short setae (
Three species of Ptychognathus. A, B. Ptychognathus barbatus (A. Milne-Edwards, 1873) (male, CW 10.2 mm,
The right P4 and P5 of four species of Ptychognathus (dorsal view). A. P. dajie sp. nov. (holotype male, CW 13.2 mm,
The right G1s of three species of Ptychognathus. A, B. Ptychognathus barbatus (male, CW 10.2 mm,
| Character | P. dajie sp. nov. | P. barbatus | P. guijulugani | P. ngankeeae | P. pusillus |
|---|---|---|---|---|---|
| Male telson (distal margin) | concave, with distinct tuft of setae (Figs |
not concave, without tufts of setae (Fig. |
not concave, without tufts of setae (Fig. |
not concave, without tufts of setae ( |
not concave, without tufts of setae (Fig. |
| P4 anterior margin | setae only on the distal part, rest almost glabrous (Figs |
setae on almost whole margin, denser in distal part (Fig. |
almost glabrous (Fig. |
almost glabrous ( |
almost glabrous (Fig. |
| P5 anterior margin | setae only on distal part (Figs |
setae on distal 1/3–1/2 (Fig. |
setae only on distal part (Fig. |
setae only on distal part ( |
setae only on distal part (Fig. |
| P5 posterior margin | short setae (Figs |
short setae (Fig. |
dense long setae (Fig. |
short setae ( |
short setae (Fig. |
| G1 (chitinous structure) | truncated, angles strongly prominent (Fig. |
rounded, angles not prominent (Fig. |
truncated, angles slightly prominent (Fig. |
rounded, angles not prominent ( |
rounded, angles not prominent (Fig. |
The NJ tree identified 21 OTUs (operational taxonomic units) with high support, corresponding to the new species in present study and 20 other previously described species (Fig.
Matrix of percentage pairwise nucleotide divergence using Kimura 2-parameter (K2P) distances and the mean numbers of base pair differences based on the cytochrome c oxidase subunit I (COI) between P. dajie sp. nov. and selected related species of Ptychognathus (see Table
| P. guijulugani | P. pusillus | P. amikee | P. hachijoensis | P. barbatus | P. stimpsoni | P. sakaii | P. takahasii | P. insolitus | P. similis | P. ngankeeae | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleotide divergence | 12.08 | 11.93 | 13.18 | 14.82 | 14.51 | 13.05 | 12.95 | 14.19 | 15.67 | 15.36 | 15.58 |
| (11.89–12.27) | (11.89–12.08) | (12.98–13.37) | (14.16–14.98) | (14.33–14.53) | (12.7–13.65) | (12.78–12.97) | (14.03–14.23) | (15.41–15.81) | (14.93–15.78) | (15.24–15.74) | |
| bp difference | 72 | 72.3 | 78.5 | 85.9 | 85 | 78.8 | 77 | 84.1 | 91.2 | 85.7 | 89 |
| (71–73) | (71–82) | (77–83) | (82–87) | (84–88) | (76–88) | (76–78) | (83–87) | (90–92) | (76–91) | (83–102) |
Among all Ptychognathus species, based on the constructed phylogenetic tree and calculated genetic distances, P. dajie sp. nov. is most closely related to P. guijulugani and P. pusillus (Fig.
Previous records of “Ptychognathus barbatus” from East and Southeast Asia (e.g.,
Special thanks to Peter K. L. Ng (
The authors have declared that no competing interests exist.
No ethical statement was reported.
This study was supported by a grant from the National Science and Technology Council (NSTC 112-2313-B-005-051-MY3), Executive Yuan, Taiwan, to HTS.
JWH performed the morphological description and the molecular analysis, and drafted the manuscript. JC performed the morphological description and drafted the manuscript. HTS performed the molecular analysis, participated in the discussion and drafted the manuscript.
Jhih-Wei Hsu https://orcid.org/0000-0002-9353-6140
Jose Christopher E. Mendoza https://orcid.org/0000-0001-9729-5703
Hsi-Te Shih https://orcid.org/0000-0003-1317-8783
All of the data that support the findings of this study are available in the main text or Supplementary Information.