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Research Article
New species of Plesioaxymyia Sinclair (Diptera, Axymyiidae) from the Palaearctic Region, including an updated molecular phylogeny of the family
expand article infoAlexei Polevoi, Nikola Burdíková§, Jan Ševčík§
‡ Forest Research Institute, Petrozavodsk, Russia
§ University of Ostrava, Ostrava, Czech Republic
Open Access

Abstract

The family Axymyiidae includes four extant genera and nine species known from the Holarctic and Oriental regions, with only one species Mesaxymyia kerteszi (Duda, 1930) occurring in Europe. The genus Plesioaxymyia Sinclair, 2013 was first discovered in Alaska in 1962, but officially described only many years later. Up to now, the genus included one species Plesioaxymyia vespertina Sinclair, 2013, known from two female specimens from western North America. During the study of the Diptera fauna in Paanajarvi National Park (Northwest Russia), one female specimen of Plesioaxymyia, was found. It differs from the Nearctic P. vespertina by details of its female terminalia and is recognized as a new species, herein described as Plesioaxymyia imprevista sp. nov. The biology and geographic distribution of Plesioaxymyia is briefly discussed. The phylogenetic position of the genus, along with the family Axymyiidae is analyzed in the light of new molecular data, including sequences of three mitochondrial (ribosomal 12S and 16S and protein-encoding COI) and three nuclear genes (ribosomal 18S and 28S, protein-encoding CAD) for 72 terminal taxa. Axymyiidae is recovered as a monophyletic group with closest relatives in the infraorder Culicomorpha and Plesioaxymyia imprevista sp. nov. representing the sister taxon to all the other species of Axymyiidae included in the analysis.

Key words:

Biology, distribution, lower Diptera, Nematocera, new species, Russia, systematics

Introduction

The family Axymyiidae is often referred to as “enigmatic” in the literature (Wihlm and Courtney 2011; Blagoderov and Lukashevich 2013; Fitzgerald and Wood 2014). This small group of flies includes four extant genera and nine species known in the Holarctic and Oriental regions (Fitzgerald and Wood 2014). Additionally, eight species in four extinct genera have been described from the Jurassic or Early Cretaceous deposits of Asia (Blagoderov and Lukashevich 2013; Shi et al. 2013). Only one species, Mesaxymyia kerteszi (Duda, 1930), is so far known from Europe. This is an extremely rare taxon, with a few recent records from eastern Slovakia (Martinovský and Roháček 1993) and Northwest Russia (Polevoi et al. 2018).

As it is known so far, all immature records of Axymyiidae are associated with dead wood. Extremely specialized larvae live inside very wet, often submerged, logs of various tree species (Wood 1981; Krivosheina 2000). The systematic position of this family is still uncertain (see Blagoderov and Lukashevich 2013; Sinclair 2013; Fitzgerald and Wood 2014 for reviews). It is often placed in or as a sister group to Bibionomorpha, but close relationships with this infraorder are not always supported by reconstructions, based on molecular data. In the comprehensive study by Wiegmann et al. (2011), Axymyiidae were placed within Bibionomorpha sensu lato, as a sister group to Bibionomorpha sensu stricto, whereas in other studies this family was represented as a sister group to Culicomorpha (Bertone et al. 2008; Ševčík et al. 2016) or in an unresolved polytomy (Zhang et al. 2023).

During studies of the Diptera fauna in Paanajarvi National Park (Russia, Karelia), an unusual looking female specimen was collected, evidently belonging to the family Axymyiidae. Preliminary examination showed that it was not a representative of any previously known Palaearctic genus, but accords well with the genus Plesioaxymyia Sinclair, which includes one North American species, P. vespertina Sinclair, 2013. Being morphologically very similar, the Karelian specimen differs from P. vespertina by characters of its terminalia. Considering the general rarity of the family Axymyiidae and the evident importance of the new record we feel it necessary to describe the new species and not wait for additional material. Moreover, we could not miss an opportunity to re-evaluate the phylogenetic position of Plesioaxymyia and Axymyiidae as a whole, based on new molecular data for extant species.

Material and methods

The type specimen was collected in Paanajarvi National Park, located in the northwestern part of the Republic of Karelia, Russia (Fig. 1). The park was established in 1992, and presently occupies a territory of over 104,000 ha, mostly covered with natural coniferous forests (Bizhon and Systra 1996; Timofeeva and Kutenkov 2009). In 2021, we used three Malaise traps as part of an insect inventory program in the territory of the park. The Plesioaxymyia specimen was collected with a trap set in a patch of spruce- and pine-dominated forest of Vaccinium myrtillus type, in the vicinity of the abandoned village of Vartolambina. The operation period of the trap was from June 1–27, which corresponds to late spring. Willows and some early-season flowers (e.g., Tussilago) were in blossom, and remnants of snow still could be found in shady places.

Figure 1. 

Location of Paanajarvi National Park, Karelia, Russia.

The trap residue was initially kept in 70% alcohol, and one Axymyiidae specimen was recognized during a preliminary inspection in the laboratory. For a detailed study, the specimen was dried by xylol and amyl acetate baths (Achterberg 2009). Terminalia were detached and macerated in KOH for 24 hours, then neutralized in acetic acid, washed in 70% alcohol, and transferred to glycerine. Finally, terminalia were placed in glycerine vial and pinned together with the rest of the specimen. The holotype is stored in the collection of the Zoological institute, St. Petersburg, Russia (ZISP).

Images of the habitus and wing were taken with a Leica MZ 9.5 stereo microscope and those of the terminalia with a Leica DM1000 compound microscope, both supplied with a LOMO MC6.3 camera. Z-stacked image series were combined using Helicon Focus v. 8.2.0 software, and final plates prepared with GIMP. The morphological terminology follows Sinclair (2013). The distribution map was created using the online tool SimpleMappr, available at https://www.simplemappr.net/.

Molecular methods principally follow those described in Ševčík et al. (2016). A total of 72 terminal taxa are included in the dataset (Appendix 1). Most of the specimens used in this study were collected by Malaise traps during the years 2000–2022. Some sequences were taken from the GenBank database. The material used in the molecular study was stored in ethanol (70% to 96%) or pinned. For DNA extraction, we used a NucleoSpin Tissue Kit (Macherey-Nagel, Düren, Germany) following the manufacturer’s protocol. PCRs (total volume = 20 μl) were performed using specific primers for sequences of three mitochondrial (ribosomal 12S and 16S and protein-encoding COI) and three nuclear genes (ribosomal 18S and 28S, protein-encoding CAD). The primers used for PCR amplifications and sequencing are listed in Table 1.

Table 1.

Primers used for PCR amplification and sequencing of the mitochondrial 12S, 16S and COI genes and nuclear 18S, 28S and CAD genes.

Gene fragment Direction Primer sequences (5´→ 3´) Source
12S F CTGGGATTAGATACCCTGTTAT Koufopanou et al. 1999
R CAGAGAGTGACGGGCGATTTGT Koufopanou et al. 1999
F TACTATGTTACGACTTAT Kambhampati and Smith 1995
R GCCAGCATTTGCGGTTATAC M. Žurovcová lab., České Budějovice, Czech Republic
16S F TAATCCAACATCGAGGTC Roháček et al. 2009
R CGAAGGTAGCATAATCAGTAG Roháček et al. 2009
F CGCCTGTTTATCAAAAACAT Palumbi et al. 1991
R CCGGTCTGAACTCAGATCACGT Palumbi et al. 1991
18S F AACCTGGTTGATCCTGCCAGT Katana et al. 2001
R TGATCCTTCTGCAGGTTCACCTACG Katana et al. 2001
F AGATACCGCCCTAGTTCTAACC Campbell et al. 1995
R GGTTAGAACTAGGGCGGTATCT Campbell et al. 1995
28S F AGAGAGAGAGTTCAAGAGTACGTG Belshaw and Quicke 1997
R TAGTTCACCATCTTTCGGGTC Laurenne et al. 2006
F ACCCGCTGAATTTAAGCAT Dayrat et al. 2001
COI F GGTCAACAAATCATAAAGATATTGG Folmer et al. 1994
R TAAACTTCAGGGTGACCAAAAAATCA Folmer et al. 1994
CAD F GGNGTNACNACNGCNTGYTTYGARCC Moulton and Wiegmann 2004
R TTNGGNAGYTGNCCNCCCAT Moulton and Wiegmann 2004
F ACNGAYTAYGAYATGTGYGA Moulton and Wiegmann 2004
R TCRTTNTTYTTWGCRATYAAYTGCAT Moulton and Wiegmann 2004

All amplified products were purified using a Gel/PCR DNA Fragments Extraction Kit (Geneaid, New Taipei City, Taiwan) following the manufacturer’s protocol. Purified products were sequenced by Macrogen Europe (Netherlands) or Eurofins Genomics (Germany). The sequences were assembled and edited in Sequencher v. 5.0 (Gene Codes Corporation, Ann Arbor, MI, USA) or SeqTrace v. 0.9.0 (Stucky 2012). GenBank accession numbers for all the sequences are listed in the Appendix 1. All sequences were checked with the NCBI database using the BLAST and in single-gene trees to avoid possible contamination or other inappropriate results.

Alignments of all genes were created using MAFFT v. 7 on the MAFFT server (http://mafft.cbrc.jp/alignment/server/). The resulting alignments were visually inspected and manually refined in BioEdit v. 7.2.5 (Hall 1999) when necessary. All unreliably aligned regions of rRNA genes were removed in the program GBLOCKS v. 0.91b (Castresana 2000); with conditions set as follows: allow smaller blocks, allow gap positions within the final blocks, allow less strict flanking positions and do not allow many contiguous non-conserved positions, or in ClipKIT v. 2.2.2 (Steenwyk et al. 2020) using the -gappy option with a threshold of 0.7. The third positions of COI gene were excluded from the subsequent analyses using software DAMBE (Xia and Xie 2001). The alignments were concatenated using FASconCAT v. 1.0 (Kück and Longo 2014). The final data matrix consisted of 5419 characters: 12S – 301 bp, 16S – 287 bp, 18S – 1985 bp, 28S – 1005 bp, COI – 436 bp (third positions removed) and CAD – 1405 bp.

The final concatenated dataset was partitioned by gene and codon position and subsequently analysed using the maximum likelihood (ML) method. Analyses were conducted using IQ-TREE v. 1 (Nguyen et al. 2015) on the IQ-TREE web server (Trifinopoulos et al. 2016). Best-fitting substitution models were chosen automatically by the IQ-TREE software: 12S – TVM+F+I+G4; 16S – TVM+F+I+G4; 18S – GTR+F+I+G4; 28S – TVM+F+I+G4; CAD_1 – TN+F+I+G4; CAD_2 – SYM+I+G4; CAD_3 – GTR+F+I+G4; COI_1 – TIM2+F+I+G4; COI_2 – TIM3+F+I+G4; without free-rate heterogeneity. Branch supports were evaluated using 1000 ultrafast bootstrap (Hoang et al. 2018). All other settings were left as default. The node support values are given in the form of ultrafast bootstrap (= ufboot). The resulting phylogenetic tree (consensus trees) was visualized using the Interactive Tree of Life (iTOL v. 7.0; Letunic and Bork 2024). A species of Mecoptera, Boreus hyemalis (Linnaeus, 1767), was used as a root.

Results

Family Axymyiidae

Plesioaxymyia imprevista Polevoi, sp. nov.

Figs 2A–C, 3A–C

Specimens examined.

Holotype. Russia • ♀; Karelia, Paanajarvi National Park, Vartolambina; 66.246°N, 30.555°E; 80 m a.s.l.; 1–27 Jun. 2021; A. Protasova leg.; Malaise trap; GenBank: accession numbers PV036313, PV036316, PV036319, PV036317, PV035246, PV037681; ZISP, INS_DIP_0001011.

Differential diagnosis.

Medium-sized, dark brown species (Fig. 2A); wings hyaline with dark elongated pterostigma, covering apical half of vein R1; legs yellowish-brown with darkened tarsi, femora and tibiae darkened apically. Similar to Plesioaxymyia vespertina, from which it is distinguished by details of female terminalia: sternite 8 with smoothly rounded dorsoapical margin (forming somewhat protruding dorsoapical corner in P. vespertina) and completely reduced basal segment of cerci (distinct in P. vespertina).

Figure 2. 

Plesioaxymyia imprevista sp. nov., female holotype A habitus, lateral view B head and thorax, oblique anterodorsal view C wing. Abbreviations: CEE – triangular excision of compound eye; CuA – anterior branch of cubital vein; M1,2,4 – medial veins; R2,3,4+5 – radial vein; Sc – subcostal vein; TSP – transverse shiny patch of mesonotum. Scale bars: 1 mm (A, С); 0.3 mm (B).

Description.

Head. Head dark brown. Face sunken, clypeus convex, mouthparts brown. Palpus brown, 5-segmented, with short (almost hidden) first segment and broadened third segment. Compound eye densely covered with short ommatrichia; divided by fine groove into upper and lower hemispheres of unequal size and with deep triangular excision opposite antennal base (Fig. 2B). Three ocelli arranged in equilateral triangle, placed on elevated tubercle. Frons with a few brownish hairs above antennal bases and between ocellar triangle and compound eye. Posterior part of head with numerous brownish hairs. Antenna 16-segmented, brown; pedicel yellowish apically; middle flagellomeres about twice as wide as long.

Thorax. Mesonotum dark brown, thinly dusted, lacking any larger setae but covered with tiny yellowish hairs; a pair of narrow transverse shiny patches present along prescutal suture (Fig. 2B); prescutum yellowish laterally. Scutellum yellowish-brown, strongly convex, with short hairs along posterior margin. Pleura brown.

Wing. Wing length 4.08 mm. Wing hyaline with light brownish tinge (Fig. 2C); brown elongated pterostigma occupies apical half of R1. Costa hardly produced beyond R4+5. Sc curved into costa proximally to Rs; Sc-r reduced. Rs with kink; R2+3 forked well beyond apex of R1, R2 deviates in slightly obtuse angle. Crossvein r-m perpendicular to R4+5. M1+2 branching slightly before apex of R1; section of M-stem distal to r-m about as long as M1, longer than M2 and about twice as long as its section proximal to r-m. M4 straight; CuA distinctly sinuous. CuP short, scarcely reaching beyond posteromedial angle of wing. Anal lobe well-developed. Macrotrichia on wing veins not visible. Halter brown.

Legs. Coxa, trochanters, femora and tibiae yellowish-brown; all femora and tibiae darkened apically; tarsi brownish. Hind tibia slightly curved in middle, with brush of bristly hairs posteroapically. Ratio of basitarsus to tibia: bt1:t1 – 0.45, bt2:t2 – 0.43, bt3:t3 – 0.30. Tibial spurs not developed.

Abdomen. Abdomen brown. Tergites 1–7 with sparse hairs posteriorly. Terminalia (Fig. 3) brown. Tergite 8 approximately one-third length of sternite 8, rounded and setose apically; sternite 8 lengthened, tapered apically, with sparse short hairs. Cercus one-segmented; basal segment not developed; apical segment about 4 times longer than wide, bearing ca. 10 setae.

Figure 3. 

Plesioaxymyia imprevista sp. nov., female terminalia A lateral view B dorsal view C ventral view. Abbreviations: cerc—cercus; st 7, 8—sternites; tg 7, 8—tergites. Scale bars: 0.2 mm (A–C).

Etymology.

The species epithet is from the Latin imprevistus (unexpected, unforeseen), stressing that the finding of this species in Northwest Russia was a real surprise.

Distribution.

The species is currently known only from the type locality in Russian Karelia (Northwest Russia).

Biology.

The adult was collected with a Malaise trap set in Vaccinium myrtillus type pine- and spruce-dominated forest. The larval biology is unknown.

Key to the Holarctic species of Plesioaxymyia, females

1 Sternite 8 forming somewhat protruding dorsoapical corner in lateral view, basal segment of cerci distinct (Sinclair 2013, figs 4, 5) P. vespertina Sinclair, 2013
Sternite 8 with smoothly rounded dorsoapical margin in lateral view, basal segment of cerci completely reduced (Fig. 3A, B) P. imprevista sp. nov.

Molecular data

The family Axymyiidae, represented in this dataset by five species from all four extant genera, is recovered as monophyletic with maximum support (ufboot = 100) (see Fig. 4). The new species described in this paper, Plesioaxymyia imprevista sp. nov., represents the sister taxon to all other species of Axymyiidae included in the dataset. Surprisingly, two species of Protaxymyia are not recovered as sister taxa. Instead, Protaxymyia thuja Fitzgerald & Wood, 2014 is sister species (ufboot = 95) to the branch including Axymyia furcata McAtee, 1921 and Mesaxymyia kerteszi. The sister relationship of the latter two species is, however, weakly supported (ufboot = 61).

Figure 4. 

Maximum likelihood hypothesis (IQ-TREE) for relationships among selected taxa of lower Diptera based on DNA sequence data /12S, 16S, 28S, 18S, COI (third positions removed) and CAD/, 5419 characters. Support numbers refer to ultrafast bootstrap values (ufboot) over 50.

The closest relative of the family Axymyiidae appears to be the infraorder Culicomorpha, although their sister relationship is only moderately supported (ufboot = 84). The well-supported clade (Tanyderidae + Psychodidae), represented by Protoplasa fitchii Osten Sacken, 1859 and Clogmia albipunctata (Williston, 1893), forms a sister group to the clade (Axymyiidae + Culicomorpha), also with moderate support (ufboot = 82).

The infraorder Bibionomorpha sensu stricto is shown to be monophyletic with high support (ufboot = 100), as well as Bibionomorpha sensu lato (ufboot = 98), including also Anisopodidae, Canthyloscelidae and Scatopsidae. The sister clade to Bibionomorpha is the infraorder Brachycera, altogether forming the well-supported group Neodiptera (ufboot = 97), which is sister clade to the large group of aquatic or semi-aquatic lower Diptera formed by the families Ptychopteridae, Blephariceridae, Tanyderidae, Psychodidae, and Axymyiidae and the families of the infraorder Culicomorpha.

Discussion

Biology and distribution

Some species of the family Axymyiidae can be rather abundant in suitable places, at least in respect of the density of larvae (Krivosheina 2000; Wihlm and Courtney 2011). However, representatives of the genus Plesioaxymyia apparently are not among them. The Nearctic P. vespertina was searched for repeatedly in the location where it was first found (Sinclair 2013). It was encountered again only 50 years later, and far to the south of the earlier known locality. The Paanajarvi area in Russian Karelia has been known for its relatively well-studied entomofauna since the middle of 20th century (Viramo 1998; Yakovlev et al. 2000), but during this time no Axymyiidae came into any entomologist’s view. All known records of Plesioaxymyia, both in North America and Russian Karelia, look to be accidental, which may be the result of extremely small populations or a cryptic lifestyle.

Adults of Axymyiidae usually can be found in shady habitats, near rivers, rivulets or other water bodies, close to woody substrates where the larvae develop (Krivosheina 2000; Wihlm and Courtney 2011). The collecting localities of P. vespertina in North America well meet these conditions (Sinclair 2013); however, P. imprevista sp. nov. was found in a patch of relatively dry coniferous forest (Fig. 5). The patch is bordered from the north by Cladonia type pine stands, and the only available water body around is the Olanga River, about 200 m to the south. Considering unsuccessful attempts to collect immature stages at the Alaskan and Mt. Rainier localities, Sinclair (2013) suggested that the larva of P. vespertina may reside in wet litter or decomposing fungi. In Paanajarvi, potentially suitable dead wood sources were totally absent close to the trap location. The distance from the river, however, does not look unreachable (even if Axymyiidae are considered weak fliers), so the wet dead wood, potentially available along the riverbank, cannot be excluded as a larval substrate. In general, the biology of Plesioaxymyia remains almost unknown. For now, we only can outline the flight activity period and preferred habitats, while other details of the life history are yet to be discovered.

Figure 5. 

Collecting biotope of Plesioaxymyia imprevista sp. nov. A position of Malaise trap (yellow circle), displayed on a satellite image (https://www.bing.com/maps) B general view of the biotope.

The current range of Plesioaxymyia comprises the western Nearctic and western Palaearctic (Fig. 6). It is highly likely that the current disjunct pattern is just a result of insufficient knowledge. Considering the occurrence of the genus at relatively high latitudes (or high altitudes in more southern regions), a circumpolar, possibly boreo-alpine, distribution can be suggested, and further findings from at least the northern regions of East Russia can be expected.

Figure 6. 

Distribution of the genus Plesioaxymyia in the Holarctic Region. Plesioaxymyia vespertina is indicated by red circles and P. imprevista sp. nov. by a green circle.

Molecular phylogeny

The position of Axymyiidae as a sister group of Culicomorpha was initially revealed by Bertone et al. (2008), whose reconstruction was based on four nuclear gene markers and one sequenced taxon, namely Axymyia furcata. It was rendered together with Nymphomyia dolichopeza Courtney, 1994 (Nymphomyiidae) with relatively low branch support (56%). The authors themselves considered this placement to be ambiguous, suggesting that it may have been influenced by the long-branch attraction effect. The subsequent study by Ševčík et al. (2016), which was based on six gene markers, focused on Bibionomorpha. However, it also included two species of Axymyiidae (Axymyia furcata and Protaxymyia thuja) among numerous taxa in the broad outgroup. In this study, the sister group relation to Culicomorpha was identified again, though with similarly low support. The recent reconstruction, based on the complete mitochondrial genome (Zhang et al. 2023), included one taxon (Protaxymyia sp.) and did not demonstrate any clear relations for Axymyiidae, whose position appeared in an unresolved polytomy.

Sinclair (2013) proposed that Plesioaxymyia is sister group to the remaining Axymyiidae based on morphological characters. This hypothesis is now corroborated by genetic data. However, the grouping of other species deviates from expectations. Notably, Protaxymyia thuja is not rendered as sister taxon to P. taiwanensis Papp, 2007, being placed closer to species described in different genera (Axymyia furcata and Mesaxymyia kerteszi).

The distinction between the genera of Axymyiidae (except the very peculiar Plesioaxymyia) is not clearly defined. Separation of adults largely relies on wing characters (Krivosheina 2000; Zhang 2010; Shi et al. 2013); however, with the accumulation of new materials, it has become evident that wing venation is not stable and its significance in the generic classification of Axymyiidae, including extinct genera, should be re-evaluated (Martinovský and Roháček 1993; Blagoderov and Lukashevich 2013; Fitzgerald and Wood 2014). The importance of larval and pupal characters (Krivosheina 2000; Fitzgerald and Wood 2014) is similarly unclear, given that preimaginal stages of several species have not yet been discovered.

Conclusion

Our reconstruction of the molecular phylogeny is the first to incorporate representatives of all extant genera of Axymyiidae, although this still represents only approximately half of the known species. Axymyiids constitute a relatively isolated group, with the Culicomorpha families representing its closest evolutionary relatives. Both groups share an aquatic or semi-aquatic larval habitat. The sister group relation of Axymyiidae to Culicomorpha is in agreement with the findings of Bertone et al. (2008) and Ševčík et al. (2016) and is now evidenced with much better (ufboot = 84) support. While this may not yet be considered as strongly reliable, it is assumed that it could be even better supported if more taxa were included.

The current, unexpected placement of the species in relation to the Axymyiidae genera may be an artefact caused by the incomplete DNA data for Mesaxymyia kerteszi and Axymyia furcata. However, new molecular data provide additional background for the necessity of a revised generic classification of Axymyiidae. It is likely that such a revision will not be possible until details of the morphology of preimaginal stages and, preferably, also genetic data on all extant species are available.

Acknowledgements

We express our sincere gratitude to the staff of Paanajarvi National Park, and especially to Anastasiya Protasova for their assistance during the field studies. We also highly appreciate help from Elena Lukashevich (Moscow, Russia) and Andrei Przhiboro (St. Petersburg, Russia) with some important literature sources on the family Axymyiidae. The field research in Taiwan was carried out in cooperation with the National Chung Hsing University, Taichung, and the National Museum of Natural Science, Taichung. We are especially grateful to Sheng-Feng Lin and Michal Tkoč for their help with the field work in Taiwan. Peter Chandler (Melksham, UK), Bradley Sinclair (Ottawa, Canada) and Scott Fitzgerald (Corvallis, USA) kindly read the manuscript and provided useful comments.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

The work of A.P. was carried out under state order to the Karelian Research Center of the Russian Academy of Sciences (Forest Research Institute). The research of N.B. and J.Š. was funded by the Ministry of Education of the Czech Republic by institutional financing of the long-term conceptual development of the research institution (University of Ostrava).

Author contributions

Conceptualization: AP. Formal analysis: NB. Investigation: JŠ. Methodology: AP, JŠ. Software: NB. Visualization: NB, AP. Writing – original draft: AP, JŠ. Writing – review and editing: AP, JŠ.

Author ORCIDs

Alexei Polevoi https://orcid.org/0000-0003-2932-9574

Nikola Burdíková https://orcid.org/0009-0009-0735-4411

Jan Ševčík https://orcid.org/0000-0001-7174-593X

Data availability

All of the data that support the findings of this study are available in the main text or Supplementary Information. Sequence data used in this article are available in the GenBank Nucleotide Database at https://www.ncbi.nlm.nih.gov/genbank.

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Appendix 1

Table A1.

List of specimens used for the phylogenetic analysis, with GenBank (GB) accession numbers.

Species Voucher code Sampling locality and year 12S 16S 18S 28S COI CAD
MECOPTERA
Boreus hyemalis (Linnaeus, 1767) borhym from GB GAYK00000000.2
DIPTERA
Anisopodidae
Mycetobia divergens Walker, 1856 OUT39 USA, 2014 KP288703 KP288735 KP288781 KP288718 KT316870 FJ040587
Sylvicola cinctus (Fabricius, 1787) SylCin Czech Republic, 2016 PV156352 PV156360 PV206766 PV230690 PV153731 PV158022
Axymyidae
Axymyia furcata McAtee, 1921 axyfur from GB n/a n/a n/a KC177639 MG112467 KC177110
Mesaxymyia kerteszi (Duda, 1930) BA466 Russia, 2016 PV036314 PV036315 n/a PV036318 PV035247 n/a
Plesioaxymyia imprevista sp. nov. BA187 Russia, 2021 PV036313 PV036316 PV036319 PV036317 PV035246 PV037681
Protaxymyia taiwanensis Papp, 2007 ProTai Taiwan, 2019 PV156350 PV156358 PV206762 PV230687 PV153729 PV158019
Protaxymyia thuja Fitzgerald &Wood, 2014 OUT38 USA, 2014 KP288702 KP288734 KP288780 KP288817 KT316869 KX453744
Blephariceridae
Edwardsina gigantea Zwick, 1977 edgi from GB KC177470 KC177460 KC177283 KC177655 KC192960 FJ040624
Liponeura cinerascens Loew, 1844 LipCin Slovakia, 2021 PV156349 PV156357 PV206759 PV230686 PV153728 PV158017
Bibionidae
Bibio marci (Linnaeus, 1758) OUT1 Czech Republic, 2013 KJ136689 KJ136724 KP288758 KJ136761 KT316846 KX453730
Dilophus femoratus Meigen, 1804 OUT23 Slovakia, 2014 KP288696 KP288728 KP288773 KP288811 KT316864 KX453740
Penthetria funebris Meigen, 1804 OUT14 Slovakia, 2014 KP288689 KP288721 KP288767 KP288804 KT316858 KX453735
Plecia nearctica Hardy, 1940 OUT2 USA, 2013 KJ136690 KJ136725 KP288759 KJ136762 KT316847 n/a
Bolitophilidae
Bolitophila cinerea Meigen, 1818 B1 Slovakia, 2012 KJ136712
BolCin Czech Republic, 2016 ON601484 ON650659 ON601118 MT446881 ON706250
Bolitophila hybrida (Meigen, 1804) BolHyb Slovakia, 2021 JANSTU000000000.1
Canthyloscelidae
Canthyloscelis pectipennis Edwards, 1930 CanPic Argentina, 2022 PV156346 PV156355 PV206757 PV230685 PV153726 n/a
Hyperoscelis veternosa Mamaev & Krivosheina, 1969 OUT24 Slovakia, 2014 KP288697 KP288729 KP288774 KP288812 KT316865 KX453741
Synneuron annulipes Lundstrom, 1910 OUT57 Slovakia, 2016 KX453693 KX453701 n/a KX453713 KX453763 n/a
Cecidomyiidae
Asphondylia sarothamni (Loew, 1850) OUT18 Czech Republic, 2014 KP288692 KP288724 KP288770 KP288807 KX453761 KX453738
Catocha angulata Jaschhof, 2009 C26 Slovakia, 2014 KP288677 KP288711 KP288750 KP288792 KT316837 KX453719
Catotricha subobsoleta (Alexander, 1924) OUT42 USA, 2014 KP288706 KP288738 KP288784 KP288821 KT316873 KX453747
Porricondyla nigripennis (Meigen, 1880) OUT16 Slovakia, 2014 KP288690 KP288722 KP288768 KP288805 KT316859 KX453736
Ceratopogonidae
Culicoides sonorensis Wirth & Jones, 1957 culson from GB BK065013 BK065013 n/a n/a BK065013 GAWM00000000.1
Chaoboridae
Chaoborus flavicans (Meigen, 1830) CH-F2 Slovakia, 2019 PV156348 PV156356 PV206758 n/a PV153727 PV158016
Chironomidae
Cricotopus draysoni Cranston & Krosch, 2015 cridra from GB GFNI00000000.1 GFNI00000000.1 n/a n/a GFNI00000000.1 GFNI00000000.1
Chironomus tepperi Skuse, 1889 chitep from GB NC_016167 NC_016167 KC177280 KC177658 NC_016167 FJ040616
Culicidae
Anopheles gambiae Giles, 1902 anogam from GB NC_002084 NC_002084 AM157179 KC177663 NC_002084 KC177121
Deuterophlebiidae
Deuterophlebia coloradensis Pennak, 1945 deucol from GB n/a n/a GQ465776 FJ040539 GQ465781 KC177114
Diadocidiidae
Diadocidia ferruginosa (Meigen, 1830) SJ1 Slovakia, 2010 MG554126 KP288786
diafer Czech Republic, 2016 PV156347 ON601121 MT446885 PV158015
Diadocidia globosa Papp & Ševčík, 2005 SJ9 Thailand, 2008 KP288708 KP288740 KP288789 KP288822 KT316878 KX453755
Ditomyiidae
Ditomyia fasciata (Meigen, 1818) SJ3 Czech Republic, 2010 KJ136698 MG554125 MG554141 KJ136770 MG554168 KX453753
Symmerus annulatus (Meigen, 1830) D2 Slovakia, 2012 MT446483 KX453696 KX453708 KX453757
symann from GB FJ171934 KC177112
Dixidae
Dixa submaculata Edwards, 1920 OUT58b Czech Republic, 2015 KX453694 KX453702 KX453706 KX453714 KX453764
dixsub from GB KC177123
Hesperinidae
Hesperinus brevifrons Walker, 1848 OUT41 USA, 2014 KP288705 KP288737 KP288783 KP288820 KT316872 KX453746
Hesperinus ninae Papp & Krivosheina, 2010 OUT12 Georgia, 2013 KP288687 KP288719 KP288765 KP288802 KT316856 KX453734
Keroplatidae
Keroplatus testaceus Dalman, 1818 B7 Slovakia, 2014 KJ136683 MG554129 KP288746 KX453716
KerTes Czech Republic, 2016 ON601130 MT446947
Lygistorrhina sanctaecatharinae Thompson, 1975 lygsan USA, 2018 MT446624 PV206760 ON601102 MT446948 PV158018
K105 USA, 2018 MT446547
Macrocera centralis Meigen, 1818 K10 Slovakia, 2013 KP288682 KP288716 KP288755 KP288797 KT316841 KX453723
Paleoplatyura johnsoni Johannsen, 1910 PaJo Italy, 2016 MT446551 MT446627 PV206761 MT446846
K80 Italy, 2016 MG049755 MT446675
Limoniidae
Rhipidia sejuga Zhang, Li & Yang, 2014 rhisej from GB GEMJ00000000.1
Mycetophilidae
Exechia fusca (Meigen, 1804) ExFu Czech Republic, 2016 MG684498 MH114203 MG684611 ON601123 MG684785
E19 Czech Republic, 2015 MK133002
Gnoriste bilineata Zetterstedt, 1852 GS4 Czech Republic, 2009 KP288679 KP288713 KP288752 KP288794 KT316839 KX453720
Sciophila rufa Meigen, 1830 SciRuf Czech Republic, 2021 MT446554 ON601475 PV206765 ON601116 MT446956 PV158021
Taxicnemis marshalli Matile, 1989 NZ1 New Zealand, 2016 ON601489 ON601459 ON650665 ON601136 ON601531 ON706255
Pachyneuridae
Cramptonomyia spenceri Alexander, 1931 OUT37 USA, 2014 KP288779
craspe from GB NC_016203 NC_016203 KC177653 NC_016203 FJ040632
Pachyneura fasciata Zetterstedt, 1838 OUT40 Finland, 2012 KP288704 KP288736 KP288782 KP288819 KT316871 KX453745
Psychodidae
Clogmia albipunctata (Williston, 1893) OUT21 Czech Republic, 2014 KP288695 KP288727 KP288810 KT316863
cloalb from GB KC177281 FJ040622
Ptychopteridae
Ptychoptera albimana (Fabricius, 1787) OUT51 Czech Republic, 2015 KX453691 KX453699 KX453704 KX453711 KX453762 KX453750
Ptychoptera lacustris Meigen, 1830 PtyLa Czech Republic, 2018 PV156351 PV156359 PV206763 PV230688 PV153730 PV158020
Scatopsidae
Aspistes berolinensis Meigen, 1818 OUT43 Czech Republic, 2013 KP288707 KP288739 KP288785 KX453710
AspBer Czech Republic, 2018 PV153725 PV158014
Scatopse notata (Linnaeus, 1758) OUT3 Czech Republic, 2011 KJ136691 KJ136726 KP288760 KJ136763 KT316848 KX453731
Sciaridae
Bradysia tilicola (Loew, 1850) bratil from GB GQ387651 GQ387651 KC177279 FJ040522 GQ387651 FJ040621
Sciara hemerobioides (Scopoli, 1763) SciHem Czech Republic, 2018 MT446553 MT446628 PV206764 PV230689 MT446955 MT446687
Simuliidae
Parasimulium crosskeyi Peterson, 1977 parcro from GB AF049472 n/a n/a KC177660 FJ524493 KC177118
Tanyderidae
Protoplasa fitchii Osten Sacken, 1859 profit from GB KC177472 KC177462 KC177286 KC177670 NC_016202 FJ040626
Thaumaleidae
Thaumalea bezzii Edwards, 1929 OUT53 Slovakia, 2015 KX453692 KX453700 KX453705 KX453712 KX453751
thabez from GB KT215925
Tipulidae
Tanyptera atrata (Linnaeus, 1758) TanAtr Czech Republic, 2021 PV156353 PV156361 PV206767 PV230691 PV153732 n/a
Tipula abdominalis (Say, 1823) tipabd from GB KC177466 KC177457 KC177288 KC177678 KC192958 GQ265584
Trichoceridae
Trichocera saltator Harris, 1778 trisal from GB GAXZ00000000.2
Sciaroidea incertae sedis
Heterotricha takkae Chandler, 2002 HetTak Greece, 2016 MG684499 MG684543 MG684612 ON601125 MG684786 MH114336
Chiletricha spinulosa Chandler, 2002 MJ16 Chile, 2000 KT316809 KT316814 KT316819 KT316824 KX453760 KX453727
Insulatricha hippai Jaschhof, 2004 IS4a New Zealand, 2016 ON601487 ON601480 ON650663 ON601128 ON601501 ON706253
Ohakunea bicolor Edwards, 1927 MJ38 New Zealand, 2002 KT316810 KT316815 KT316820 KT316825 KT316844 KX453728
Rangomarama tonnoiri Jaschhof & Didham, 2002 MJ51 New Zealand, 2002 ON601488 ON601481 ON650664 ON601135 ON601502
Rangomarama sp. MJ54 New Zealand, 2002 ON706254
Sciaropota japonica Chandler, 2002 DL30 South Korea, 2022 OQ533498 OQ533499 OQ533501 OQ533500 OQ525969 OQ539524
Brachycera
Asilus crabroniformis Linnaeus, 1758 asicra from GB KC177475 KC177451 KC177289 KC177704 KC192962 EF650383
Bombylius major Linnaeus, 1758 bommaj from GB KC177474 KC177450 KC177290 KC177708 KC192961 KC177144
Haematopota pluvialis Linnaeus, 1758 haeplu from GB KC177479 KC177454 KC177294 KC177694 MZ563333 n/a
Musca domestica Linnaeus, 1758 mucdom from GB AY573084 KC347601 KC177313 KC538816 JX438043 AY280689
Platypeza anthrax Loew, 1870 plaant from GB GCGU00000000.1 n/a n/a GCGU00000000.1 GCGU00000000.1 n/a
Xylomya maculata (Meigen, 1804) XylMac Czech Republic, 2020 PV156354 PV156362 PV206768 PV230692 PV153733 n/a

Supplementary material

Supplementary material 1 

Linked Data table of specimens used for the phylogenetic analysis

Alexei Polevoi, Nikola Burdíková, Jan Ševčík

Data type: xlsx

Explanation note: File includes linked table with taxa used in the phylogenetic analysis and GenBank accession numbers for sequences.

This dataset is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). The Open Database License (ODbL) is a license agreement intended to allow users to freely share, modify, and use this Dataset while maintaining this same freedom for others, provided that the original source and author(s) are credited.
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