Research Article |
Corresponding author: Wentian Shi ( wtshi.pku@gmail.com ) Corresponding author: Wanchang Zhang ( wanchangzhang@ncu.edu.cn ) Academic editor: Tihomir Stefanov
© 2025 Jiali Ding, Wen Lei, Haryono Haryono, Wentian Shi, Wanchang Zhang.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Ding J, Lei W, Haryono H, Shi W, Zhang W (2025) Phylogenetic analysis of Betta coccina complex (Teleostei, Osphronemidae) from Peninsular Malaysia and Sumatra Island with descriptions of two new species. ZooKeys 1238: 161-181. https://doi.org/10.3897/zookeys.1238.142857
|
The Betta coccina complex is a diverse taxonomic group of fighting fish widely distributed in isolated islands in Southeast Asia. This genus is an ideal model for investigating freshwater fish evolutionary patterns and historical biogeography in the Malay Archipelago. In this study, based on principal component analysis of morphological traits, taxonomic diagnoses, and phylogenetic analysis of the mitochondrial cytochrome b gene, two new species are described from Sumatra Island, Betta iaspis sp. nov. and Betta mulyadii sp. nov. The former has a distinctive black anal fin with a few red patches on the posterior half, while the latter is red and unspotted throughout, distinguishing them with their five or six subdorsal scales from other members of the Betta coccina complex. Phylogenetic analysis of the Betta coccina complex based on Cyt b further suggests that the speciation and present distributional pattern of this complex cannot be explained simply by the current geographic isolation of the Strait of Malacca, but by the connection-isolation scenario in the Pleistocene biogeographic context in Sundaland. This metapopulation of extant Betta species suggests a potential radiative evolution before the Last Glacial Maximum. These findings advance our understanding of the taxonomy and biogeographic evolution of Betta species in Southeast Asia.
Betta, biodiversity, mitochondrial cytochrome b gene, phylogeny, taxonomy
The genus Betta (also known as fighting fish), comprises a group of small sized (< 150 mm TL) labyrinth fish distributed widely in Southeast Asia. More than 70 species have been diagnosed from this genus (
Phylogenetic relationships within the genus Betta have been partially constructed, with species often forming distinct clades within different Betta complexes (
In 2012, a Betta species with simple red coloration was discovered in Riau, Sumatra Island (see map in Fig.
Geographic distribution of 10 species from B. coccina complex. The plot shows B. iaspis sp. nov. (pink circle) and B. mulyadii sp. nov. (red circle) and phylogenetic relationship among them; species from the B. persephone cluster are indicated by circles while species from B. coccina cluster are indicated by squares.
Specimens were collected using hand nets and preserved in 95% ethanol. Holotypes were deposited at
Museum Zoologicum Bogoriense (
To further explore the morphological differences between these two new species and existing ones, we employed principal component analysis (PCA) to examine the continuous traits across species, assessing their similarity and redundancy. Prior to analysis, all variables were standardized to a mean of zero and unit variance to ensure equal weighting. Morphological data from eight characters were analyzed via the Principal Components Analysis app in Origin 2023b with default parameters. Characters used in PCA are key morphological features employed in previous taxonomic classification including: dorsal fin rays, unpaired fin shapes, predorsal scales, subdorsal scales, lateral scales, transverse scales, body base colors and body flank color patterns. Any specimens lacking data or for which certain analyses were not relevant were excluded from the study. Morphological characteristics not directly measurable from individual specimens were coded as zero and one.
Genomic DNA was extracted from fin tissues using the TIANamp Marine Animals DNA Kit (Tiangen, China). We amplified the Cyt b using primers designed by
To construct the phylogeny of the B. coccina complex and estimate genetic distances between the new species and their congeners, we conducted amplification and sequencing of the Cyt b following the method described by
We found that Betta coccina complex is divided into two morphological clusters, one includes B. coccina, B. livida, B. tussyae, B. rutilans, B. brownorum, B. hendra, and B. burdigala, and the other consists of B. persephone, B. miniopinna, Betta iaspis sp. nov. and Betta mulyadii sp. nov.
The first two principal components (PC1 and PC2) explained 54.6% and 14.7% of the morphological variation of the Betta genus, respectively (Fig.
Holotype.
Betta iaspis sp. nov. differs from its congeners in the B. coccina group by the following unique combination of characters: less dorsal-fin rays (8–10*) and subdorsal scales (5–6*); shorter dorsal–fin base (7.5–19.1% SL, mean 11.7%); male with dark blackish body; without green iridescent mid-lateral body patch; dorsal-, pelvic- and caudal fins red without significant marks; blackish anal fin with reddish patches on posterior part.
Morphometric and meristic data are summarized in Table
Morphometric and meristic data of Betta iaspis sp. nov. (n = 31,
Morphometrics | Betta iaspis sp. nov. | Betta mulyadii sp. nov. | ||
---|---|---|---|---|
Holotype | Paratype | Holotype | Paratype | |
minimum–maximum (mean ± standard deviation SD) | minimum–maximum (mean ± standard deviation SD) | |||
Standard length (mm) | 22.0 | 17.7–23.9 (21.7 ± 1.6) | 18.5 | 22.4–28.4 (24.9 ± 1.8) |
As % Standard length | ||||
Total length | 132.3 | 112.0–131.3 (124.9 ± 4.1) | 135.1 | 119.1–129.6 (124.3 ± 2.6) |
Predorsal length | 67.7 | 57.8–66.1 (61.6 ± 2.0) | 64.9 | 58.1–63.5 (60.8 ± 1.4) |
Postdorsal length | 22.7 | 21.8–32.2 (25.3 ± 2.6) | 24.3 | 21.3–28.9 (24.1 ± 2.2) |
Preanal length | 45.5 | 39.7–47.0 (42.6 ± 1.7) | 42.7 | 38.1–43.5 (40.2 ± 1.6) |
Head length | 28.6 | 21.6–28.8 (25.1 ± 1.6) | 26.9 | 21.2–26.2 (23.7 ± 1.2) |
Body depth at dorsal-fin origin | 20.0 | 18.2–22.3 (19.8 ± 1.1) | 16.9 | 18.7–21.7 (23.7 ± 1.2) |
Pelvic-fin length | 37.7 | 18.3–32.8 (24.8 ± 4.3) | 31.4 | 19.6–36.5 (28.0 ± 4.6) |
Anal-fin base length | 50.9 | 47.9–57.8 (52.7 ± 2.0) | 48.1 | 50.7–58.9 (54.2 ± 2.0) |
Dorsal-fin base length | 12.8 | 9.87–15.1 (11.9 ± 1.3) | 13.0 | 9.9–15.1 (12.7 ± 1.3) |
Caudal peduncle depth | 12.4 | 11.9–15.6 (14.1 ± 0.8) | 12.5 | 12.9–15.2 (14.1 ± 0.7) |
In % Head length (mean ± SD) | ||||
Orbit diameter | 27.1 | 25.5–34.8 (29.0 ± 2.6) | 30.1 | 24.6–37.5 (27.9 ± 3.0) |
Postorbital length | 50.8 | 49.1–62.0 (55.2 ± 3.0) | 47.8 | 50.9–57.8 (54.9 ± 1.9) |
Interorbital distance | 42.8 | 31.6–45.3 (39.2 ± 3.6) | 41.1 | 34.4–46.4 (40.8 ± 3.5) |
Snout length | 17.5 | 12.0–19.0 (15.8 ± 1.7) | 15.6 | 14.1–19.3 (16.7 ± 1.4) |
MERISTICS (Total counts) | minimum–maximum | minimum–maximum | ||
Anal-fin rays | 27 | 27–28 | 27 | 27–29 |
Dorsal-fin rays | 10 | 8–10 | 8 | 8–10 |
Caudal-fin rays | i-I-4+5-I-i | i-I-4+5-I-i | i-I-4+5-I-i | i-I-4+5-I-i |
Pelvic-fin rays | 6 | 6 | 6 | 6 |
Pectoral-fin rays | 12 | 12–14 | 13 | 12–14 |
Subdorsal scales | 6 | 5–6 | 5 | 5–6 |
Transverse scales | 8 | 8 | 8 | 8 |
Lateral scales | 30 | 28–30 | 30 | 29–30 |
Predorsal scales | 21 | 19–21 | 21 | 19–21 |
Postdorsal scales | 10 | 9–11 | 10 | 9–12 |
Illustrations of Betta iaspis sp. nov. A
Male
(Fig.
Type locality photographs for B. iaspis A freshly collected specimens of male from type locality in dry season (laterally inverted), coll. Mulyadi Tjoa Hong Tjai B photograph of remaining puddles in the forest in dry season, photograph by Mulyadi Tjoa Hong Tjai 2023 C the surface of the type locality appear to be dried-up in dry season, while the mud beneath the thick layer of dead leaves often remain moist D this area will turn to swamp in rain season, photograph by Agus 2022 E type locality in Jambi, a small forest swamp directly adjacent to a huge oil-palm plantation.
Female
(Fig.
Male
(Fig.
Female
(Suppl. material
Betta iaspis sp. nov. can be easily distinguished from other members of the B. coccina group by the following combination of characteristics: shorter dorsal-fin base (7.5–19.1% SL), fewer subdorsal scales (5–6) and its unique caudal-fin coloration (blackish with reddish patches on posterior part); it also differs from its most similar congeners B. persephone and B. miniopinna by the presence of red dorsal- and caudal fins (vs dark greenish/bluish); filamentous elongated posterior rays of anal fin (vs pointed but not filamentous). It can also be distinguished from B. burdigala, B. coccina, B. livida, B. tussyae, and B. uberis by lack of iridescent greenish/bluish streaks/patches on inter-radial membrane of unpaired fins (vs presence); differs further from B. burdigala and B. uberis by fewer dorsal-fin rays (8–10* vs 14–17), from B. coccina by whitish pelvic fin tips (vs black), from B. livida by fewer lateral scales (28*–30 vs 30–31); from B. tussyae by presence of iridescent blue on body flank (vs absence). It also differs from B. brownorum and B. rutilans by blackish body color (vs reddish magenta), further distinct from B. brownorum by lack of iridescent mid-lateral blotch (vs presence), from B. rutilans by presence of bright bluish margin on dorsal- and caudal fin (vs absence/indistinct). It can be differentiated from B. hendra by absence of distinct bar on opercle (vs prominent red parallel bars), less transverse scales 7–8* (vs 8–10), blackish or reddish unpaired fins (vs greenish/bluish).
Betta iaspis sp. nov. is currently only known from one single forest peat swamp in Jambi, Sumatra Island (Fig.
A Latin noun iaspis is derived from the Greek ἴασπις, for the gemstone jasper, which is usually red or green/blue in color, referring to the distinct combination of the fish’s iridescent bluish/greenish body and reddish fins.
Specimens were collected from a small forest peat swamp, which can be partly dried-up in the dry season. Similar to its congeners B. persephone in Malaysia (
All syntopic fish species recorded from the type locality are as follows: Betta simorum Tan & Ng, 1996, Boraras maculatus (Duncker, 1904), Rasbora einthovenii (Bleeker, 1851), Sphaerichthys osphromenoides Canestrini, 1860.
Oil-palm plantations and coal mining activities have severely affected the natural habitats in Jambi, especially forest peat swamps along Batang Hari River (
The consensus phylogenetic tree based on the Cyt b suggests that Betta iaspis sp. nov. is a monophyletic group distinct from its sister group B. mulyadii sp. nov. by an uncorrected p-distance of 4.35% (Fig.
Betta sp. Riau Red—Linke 2014: 228.
Holotype.
Betta mulyadii sp. nov. differs from its congeners in the B. coccina group by the following unique combination of characters: fewer dorsal-fin rays (8*–10) and subdorsal scales (5*-6); shorter dorsal-fin base (9.89–15.1% SL, mean 12.5%); male with reddish body; without green iridescent mid-lateral body patch; unpaired fins red without significant marks (dorsal and caudal fins with bright bluish margins).
Morphometric and meristic data are summarized in Table
Illustrations of Betta mulyadii sp. nov. A
Male
(Fig.
Female
(Fig.
Male
(Suppl. material
Female
(Suppl. material
Betta mulyadii sp. nov. can be easily distinguished from the closely related phylogenetic sister species Betta iaspis sp. nov. by the following combination of characters: uniformly reddish body (vs blackish), simple reddish anal fin (vs blackish with reddish patches on posterior part), dorsal-fin inter-radial membrane without dark marks (vs present). It is also distinct from other congeners of the same phylogenetic branch B. persephone and B. miniopinna by the presence of red dorsal- and caudal fins (vs dark greenish/bluish); filamentous elongated posterior rays of anal fin (vs pointed but not filamentous). It differs from its most morphologically similar species B. rutilans by the presence of a bright bluish margin on dorsal and anal fins (vs absence/indistinct), elongated anal-fin posterior rays reaching half-length of caudal fin in mature males (vs slightly pointed but not significantly elongated), fewer dorsal-fin rays (8*–10 vs 11–12*), fewer subdorsal scales (5*–6 vs 9*–10) and shorter dorsal-fin base (7.5–19.1% SL vs 20–23%). It also differs from B. burdigala, B. coccina, B. livida, B. tussyae, and B. uberis by lack of iridescent greenish/bluish streaks/patches on inter-radial membrane of unpaired fins (vs presence); differs further from B. burdigala and B. uberis by fewer dorsal-fin rays (8*–10 vs 14–17), from B. coccina by whitish pelvic-fin tips (vs black), from B. livida and B. tussyae by fewer lateral scales (29*–30 vs 30–31). It can be differentiated from B. brownorum by the lack of an iridescent mid-lateral blotch (vs presence); from B. hendra by a reddish body and fins (vs iridescent bluish/greenish), absence of distinct bar on opercle (vs prominent red parallel bars), fewer transverse scales 7–8* (vs 8–10).
Betta mulyadii sp. nov. is currently known only from an area in Riau, Sumatra Island (Fig.
The species is named after Mulyadi Tjoa Hong Tjai, who discovered this species and contributed much first-hand field information on this genus during the last 30 years. Previously the species was widely known by the common name “api-api” given by the discoverer, which means flame/fire in Bahasa Indonesia referring to the reddish body and lanceolate caudal fin.
The species was first recorded by Mulyadi Tjoa Hong Tjai in Duri in 2012. Currently it is still only found in this area, which is severely disturbed by human activities. Most of the nearby regions have been converted into oil-palm plantations or occupied by oil wells. Thus, we have not yet been able to record this species outside the type locality, which is a broken tiny swamp located inside an oil-palm plantation and adjacent to several running oil wells (Fig.
All the syntopic fish species recorded from the habitats include Betta cf. pugnax (Tan & Ng, 2005) and Rasbora einthovenii.
Oil-palm plantations and the petroleum industry have severely destroyed the environment in Duri, especially forest peat swamps. During the field survey in 2023, little original forest peat swamps could be found in this region. The type locality of the new species is in poor condition, original forest no longer exists, and the remaining swamp is shaded by secondary shrubs. Biodiversity is very low, which is expected since it is inside a large oil-palm plantation (Fig.
The consensus phylogenetic tree based on the mitochondrial Cyt b suggests that Betta mulyadii sp. nov. is a monophyletic group distinct from its sister group Betta iaspis sp. nov. by an uncorrected p-distance of 4.35% (Fig.
The ML tree reconstructed based on Cyt b sequences revealed a highly resolved topology for the Betta coccina complex, with all key branches supported by bootstrap values > 90%, providing a robust phylogenetic relationship (Fig.
Two sub-clades were observed in the B. persephone clade (Fig.
In the B. coccina clade, the phylogenetic analyses indicates that the samples of B. coccina from opposite sides of the Malacca Strait, southern part of peninsular Malaysia, and the northern side of Sumatra, fall in the same branch with low genetic distances (Figs
In this study, we noticed that B. persephone and B. coccina are distributed on both sides of the Strait of Malacca, in Sumatra and peninsular Malaysia (Fig.
During the early Pleistocene epoch (~ 2.58 million years ago), the islands of Sumatra, Java, and Borneo and peninsular Malaysia coalesced from previously isolated landmasses due to sea level regression, forming the vast unified landmass known as Sundaland (
Approximately 12,000 years ago, with the onset of the Holocene, a warming climate led to the melting of glaciers, causing sea levels to rise and initiating geographic isolation in the Malay Archipelago, such as between peninsular Malaysia and Sumatra, eventually forming the modern Strait of Malacca (
Traditional theories of allopatric speciation suggest that significant geographic isolation is required for speciation to occur (
For details of examined comparative materials see Suppl. material
The electronic version of this article in portable document format represents a published work according to the International Commission on Zoological Nomenclature (ICZN), and hence the new names contained in the electronic version are effectively published under that Code from the electronic edition alone (see Articles 8.5–8.6 of the Code). This published work and the nomenclatural acts in contains have been registered in ZooBank, the online registration system for the ICZN. The ZooBank LSIDs (Life Science Identifiers) can be resolved and the associated information can be viewed through any standard web browser by appending the LSID to the prefix http://zoobank.org/.
Indonesia’s field surveys were approved under the collaborative project between the School of Life Sciences, Nanchang University (China) and Research Center for Biosystematics and Evolution, National Research and Innovation Agency, (Indonesia), in-situ survey certificate (B-3627/IPH.1.02/KS.01.04/IX/2019), and the Non-Commercial Biological Material Transfer Agreement (No. B-1512/IPH.1/KS.01.04/XII/2020).
Most of the materials used in this study were donated by our local contacts and some obtained via commercial trading. We thank Mulyadi Tjoa Hong Tjai for guidance and assistance in obtaining materials and for sharing information and knowledge about the habitats of these species. Hendry Sutrisno, Hermanus Haryanto and R. P. Sugiarto provided important field information, materials and logistic support.
The authors have declared that no competing interests exist.
No ethical statement was reported.
The project was funded by the National Natural Science Foundation of China (32260913), Natural Science Foundation of Jiangxi Province, China (20224BAB205013) and Natural Science Foundation of Chongqing, China (CSTB2023NSCQ-MSX0877).
W.C. Zhang and W.T. Shi conceived and designed the study. W.T. Shi and H. Haryono collected specimens in the field. J.L. Ding and W. Lei conducted the morphometric measurements, DNA extraction, sequencing and molecular analysis. J.L. Ding and W. Lei prepared the figures and tables. W.T. Shi and W.C. Zhang wrote and revised the manuscript. All authors read and approved the final manuscript.
Jiali Ding https://orcid.org/0009-0009-1322-1666
Wen Lei https://orcid.org/0009-0005-3180-7784
Haryono Haryono https://orcid.org/0000-0002-5143-6790
Wentian Shi https://orcid.org/0000-0003-0130-7963
Wanchang Zhang https://orcid.org/0000-0003-1040-2516
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Comparative material and additional tables
Data type: docx
Explanation note: table S1. Detailed information of Betta coccina species and outgroup used in the present study. table S2. Genetic distances based on mitochondrial Cyt b among different species of Betta coccina complex.
Additional images
Data type: docx
Explanation note: fig. S1. Paratype illustrations of Betta iaspis sp. nov. NCUMB.65334, 30 specimens, 17.7–23.9 mm SL; same data as for holotype; females in two columns on the left, males in two columns on the right. fig. S2. Paratype illustrations of Betta mulyadii sp. nov. NCUMB.65326, 28 specimens, 22.4–28.4 mm SL; same data as for holotype; females in two columns on the left; males in two columns on the right.