Research Article |
Corresponding author: Ekgachai Jeratthitikul ( ekgachai.j@gmail.com ) Academic editor: Ruiqi Li
© 2025 Ekgachai Jeratthitikul, Chirasak Sutcharit, Pongpun Prasankok.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Jeratthitikul E, Sutcharit C, Prasankok P (2025) An integrative approach to a revision of the freshwater mussel genus Songkhlanaia (Bivalvia, Unionidae), with the description of a new species. ZooKeys 1224: 187-209. https://doi.org/10.3897/zookeys.1224.140549
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Mainland Southeast Asia, also known as Indochina, is recognized as a global biodiversity hotspot for freshwater mussels, hosting a significant number of species and exhibiting high levels of endemism. Recently, the monotypic genus Songkhlanaia was described from the Songkhla Lake Basin in southern Thailand. In this study, two additional lineages are revealed, S. moreleti comb. nov. and S. songkhramensis sp. nov., from the Mekong Basin through an integrative taxonomic approach combining morphological characters and molecular phylogenetic analyses. The multi-locus phylogenetic inference supported the monophyly of the genus and further elucidated the sister relationship between S. moreleti and the new species, and with S. tamodienica positioned as a basal lineage. Pairwise uncorrected COI p-distances among these three species also supported the species validity and ranged from 4.2% to 8.24%. Notably, S. songkhramensis sp. nov. and S. moreleti exhibit similarities in shell morphology; however, the new species can be differentiated by more robust pseudocardinal teeth. Both species are distinguishable from S. tamodienica by their approximately twice larger size, more inflated shells, and more prominent, roughened, irregular growth lines on the shell surface. Furthermore, based on the current data, these three species are recognized as endemic and are restricted to disjunct biogeographic areas in Indochina: S. tamodienica in the Songkhla Lake Basin in southern Thailand, S. moreleti in the Tonle Sap and Lower Mekong basins, and S. songkhramensis sp. nov. in the Songkhram Basin and its nearby tributaries of the Middle Mekong Basin.
Freshwater mussels, Indochina, Mekong Basin, multi-locus phylogeny, new taxa, Pseudodontini, taxonomic revision, Thailand
Mainland Southeast Asia, also known as Indochina, is recognized as a world biodiversity hotspot for freshwater mussels (Unionoida), hosting a significant number of species and high levels of endemism (
Two families of freshwater mussels are reported from Indochina. The Margaritiferidae, which are represented by only two species, are distributed exclusively in the northern part of the region (
Recently,
Songkhlanaia is considered to be restricted to the Songkhla Lake Basin (
The animal use protocol in this study was approved by the Faculty of Science, Mahidol University Animal Care and Use Committee under approval number MUSC65-013-606 and MUSC66-016-646. Freshwater mussel specimens were collected by hand and euthanized at the collection site using the two-step method outlined by the
Species identification was based on shell characteristics following descriptions in the taxonomic literature (i.e.,
Genomic DNA was extracted from foot tissues using the NucleoSpin Tissue Extraction Kit (Macherey-Nagel, Germany) and stored at -20 °C for subsequent analysis. Partial fragments of the mitochondrial cytochrome c oxidase subunit I (COI), mitochondrial large ribosomal subunit rRNA (16S rRNA), and nuclear 28S large ribosomal subunit rRNA (28S rRNA) genes were amplified using polymerase chain reaction (PCR) and employed as genetic markers for phylogenetic analyses and genetic distance calculations (COI only). PCR primers, cycling conditions, and DNA sequencing were conducted following protocols established in our previous studies (
Phylogenetic trees were estimated using a concatenated dataset of the three aforementioned gene fragments generated from 70 mussel specimens (Suppl. material
Separate multiple alignments for each gene were performed by the MUSCLE algorithm using MEGA11 v. 11.0.13 (
Phylogenetic analyses were conducted using Maximum Likelihood (ML) and Bayesian Inference (BI) methods on the online CIPRES Science Gateway (
Intraspecific and interspecific genetic distances were assessed using uncorrected p-distances calculated in MEGA11 v. 11.0.13 (
Sequencing the target gene fragments from 19 specimens of Songkhlanaia produced 660 bp of COI, 481 bp of 16S rRNA, and 763–764 bp of 28S rRNA. After concatenated alignment of these three genes with outgroups, the final 1,959-bp matrix was generated and used for phylogenetic tree reconstruction. The ML and BI trees exhibited almost identical topologies; therefore, only the ML tree is depicted in Fig.
Maximum likelihood (ML) phylogenetic tree of freshwater mussels within the subfamily Gonideinae based on a combined DNA sequence dataset of COI, 16S rRNA, and 28S rRNA genes (1,959 bp). Branch support values are indicated on nodes as bootstrap percentages from ML analysis and Bayesian posterior probabilities from BI analysis, and shown as ML/BI. The scale bar represents the estimated evolutionary distance between taxa. The clade of the genus Songkhlanaia is highlighted in blue, and type specimens are indicated by an asterisk (*). Type species of Pseudodontini genera are marked with two asterisks (**).
Conchological feature | S. tamodienica (n = 7) | S. moreleti (n = 3) | S. songkhramensis sp. nov. (n = 4; types) |
---|---|---|---|
Shell length (mm) | 50.8–67.6 | 95.4–121.7 | 104.7–120.5 |
Shell height (mm) | 32.9–43.7 | 62.0–78.7 | 73.8–78.5 |
Shell width (mm) | 16.5–28.1 | 39.3–48.2 | 46.2–55.3 |
Shell shape | rectangular | subrhomboidal to ovate | subrhomboidal to ovate |
Shell inflatedness | rather compressed | rather inflated | rather inflated |
Shell thickness | not thick | moderate thick | thick |
Shell color (adult specimens) | rusty brown to dark brown | dark brown to black | dark brown to black |
Shell surface | fine growth lines, moderately roughened on the posterior slope | with irregular growth lines, roughened on the posterior slope and border of the shell | with irregular growth lines, roughened on the posterior slope and border of the shell |
Folds on posterior slope | two fine folds | one or two faint folds | one or two faint folds |
Umbo shape | tiny, slightly elevated | rounded, moderately elevated | rounded, wide, moderately elevated |
Dorsal margin | straight, anterior low, posterior end high | slightly curved, anterior low, posterior end high | curved to slightly curved, anterior low, posterior end high |
Ventral margin | slightly curved to almost straight | slightly curved to straight | slightly curved to straight |
Right valve pseudocardinal tooth | tubercular to hill-like | tubercular or knob-like | triangular or high tubercular |
Left valve pseudocardinal tooth | hill-like or lingula-shaped subcompressed | hill-like or triangulate, subcompressed | well-developed, rectangular, rather broad and high |
V-shaped furrow on posterior end of the hinge structure | weak, not prominent | wide | wide |
Anterior adductor muscle scar | shallow, somewhat droplet-like, contiguous with anterior protractor muscle scar | impressed, ovate, separated from anterior protractor muscle scar | impressed, somewhat drop-like, separated from anterior protractor muscle scar |
Posterior adductor muscle scar | somewhat rounded, shallow to very shallow | drop-like to ovate, shallow | drop-like to ovate, shallow |
Umbo cavity | shallow | moderate deep | deep, wide |
The phylogenetic relationship between S. moreleti and the new species is significantly supported as sister taxa (BS = 100%, BPP = 1). Meanwhile, S. tamodienica was placed at the basal position within Songkhlanaia. Phylogenetic analyses further confirm Songkhlanaia as a member of the subtribe Pseudodontina with strong support (BS = 100%, BPP = 1). However, the phylogenetic position of this genus in relation to other genera is not significantly supported.
Interspecific divergence among Songkhlanaia species ranged from 4.17 to 8.26% uncorrected p-distance of the COI gene (Table
Mean genetic distances (uncorrected p-distance: %±SD) based on 660-bp COI fragment sequences among Songkhlanaia species (below diagonal), and within each species (in bold).
Taxon | 1. | 2. | 3. |
---|---|---|---|
1. S. tamodienica | 0 | ||
2. S. moreleti | 8.26 ± 0.07 | 0.23 ± 0.02 | |
3. S. songkhramensis sp. nov. | 8.04 ± 0.18 | 4.17 ± 0.23 | 0.34 ± 0.02 |
Family Unionidae Rafinesque, 1820
Subfamily Gonideinae Ortmann, 1916
Tribe Pseudodontini Frierson, 1927
Subtribe Pseudodontina Frierson, 1927
Songkhlanaia
Songkhlanaia tamodienica Konopleva, Lheknim, Sriwoon, Kondakov, Vikhrev & Bolotov in
Songkhlanaia currently consists of three species: S. tamodienica (type species), S. moreleti comb. nov., and S. songkhramensis sp. nov.
Shell medium to large, rectangular or subrhomboidal, rather compressed to inflated. Anteriorly constricted, dorsal margin straight or slightly curved, slightly elevated posteriorly. One or two folds on posterior slope. Shell surface with fine or irregular growth lines, roughened on posterior slope or border of shell. One pseudocardinal tooth on each valve; lateral teeth obsolete.
Endemic to Indochina, including Songkhla Lake Basin, Tonle Sap Basin, and Middle to Lower Mekong basins.
Songkhlanaia is represented in multi-locus phylogenetic analyses as a distinct clade among the Pseudodontini genera (Fig.
Members of Songkhlanaia are likely the largest freshwater mussels in the tribe Pseudodontini recorded to date. The largest specimen examined herein is S. moreleti (
Songkhlanaia tamodienica
Thailand – Phatthalung Province • 7 shells; Tamot District, Mae Khari Subdistrict, Songkhla Lake Basin, Tamot Stream; 7.3302°N, 100.0873°E; 17 May 2023; E. Jeratthitikul leg.;
Shell medium, rectangular, thin, rather compressed. Anteriorly constricted, dorsal margin straight, slightly elevated posteriorly. Posterior slope with two prominent folds. Umbo tiny, slightly elevated. Shell surface with fine irregular growth lines, roughened on posterior slope. Right valve with one smooth tubercular or triangular pseudocardinal tooth, left valve with somewhat lingula-shaped tooth. V-shaped furrow on posterior end of hinge structure weak, not prominent. Anterior adductor muscle scar shallow, somewhat drop-like, contiguous with anterior protractor muscle scar. Umbo cavity shallow.
This species can be distinguished from the other two congeners by its much smaller (about half size) and thin shell, rectangular shape, and rather compressed lateral profile. It can also be distinguished by 39 fixed nucleotide substitutions in the COI gene fragment (Table
Fixed nucleotide differences of COI sequences among Songkhlanaia species useful for species diagnosis. Nucleotide position based on the sequence alignment in this study.
Taxon | Fixed nucleotide differences |
---|---|
1. S. tamodienica | 39G, 48A, 57A, 72A, 90C, 93G, 97T, 99G, 112C, 123G, 126C, 132A, 147A, 159C, 174G, 204C, 243A, 244T, 246G, 249C, 267G, 279C, 288A, 289T, 312A, 318C, 345T, 348A, 366C, 408T, 414G, 453A, 462G, 480A, 483A, 498T, 510A, 558A, 654T |
2. S. moreleti | 63A, 69A, 84A, 195C, 225G, 264A, 342C, 345A, 429C, 486C, 555A, 561G, 618T, 627T |
3. S. songkhramensis sp. nov. | 12C, 42C, 214G, 282A, 345G, 531T, 546T, 559C, 580C, 597C, 603C, 657A |
So far, known only from the type locality in Songkhla Lake Basin, southern Thailand (Fig.
Songkhlanaia tamodienica was described based on a single specimen. The holotype has a relatively small (shell length 44.2 mm), thin, lighter colored shell with shallow adductor muscle scar, and slightly elevated posterior wing (
Shells of Songkhlanaia species A, B topotype of S. tamodienica from Tamot Stream, Songkhla Lake Basin, Thailand A adult specimen
A, B map showing the geographical distribution of all known Songkhlanaia species (circles) and their type locality (stars). Map was generated using QGIS v. 3.36.0 with the outline of major river basins from the Freshwater Ecoregions of the World (
Monocondylea [sic] tumida Deshayes & Jullien, 1876: 117–120, pl. 5, figs 1–3 [in part; non Monocondylus tumidus Morelet, 1866].
Pseudodon moreleti
Crosse & Fischer, 1876: 330. Type Locality: “les marécages qui avoisinent les rives du Mékong; dans un lac, à Préai-Bac, arroyo de Peam-Chelang; ďeau de la province de Compong-Soai” [= Peam Chileang and Kampong Svay, Cambodia].
Pseudodon (Pseudodon) moreleti
—
Sundadontina moreleti
—
Pseudodon thomsoni
Morlet, 1884: 401, 402, pl. 13, figs 2, 2a. Type Locality: “Cambodge” [= Cambodia].
Margaritana thomsoni
—
Pseudodon (Pseudodon) thomsoni
—
Pseudodon (Bineurus) thomsoni
—
?Pseudodon thomsoni—
Syntypes
Thailand – Sa Kaeo Province • 1 shell; Aranyaprathet District, Aranyaprathet Subdistrict, Tonle Sap Basin, Phrom Hot Stream; 13.6694°N, 102.5210°E; 31 Jan. 2015; E. Jeratthitikul leg.;
Shell large, subrhomboidal to ovate, moderately thickened, rather inflated. Anteriorly constricted, dorsal slightly curved, slightly elevated posteriorly. Posterior slope with one or two faint folds. Umbo rounded, moderately elevated. Shell surface with irregular growth lines, roughened on posterior slope and border of shell. Right valve with one smooth tubercular pseudocardinal tooth, left valve with hill-like or triangulate pseudocardinal tooth, subcompressed. V-shaped furrow on posterior end of hinge structure prominent, wide. Anterior adductor muscle scar impressed, ovate, separated from anterior protractor muscle scar. Umbo cavity moderately deep.
This species is much larger and more inflated than the type species. Irregular growth lines on the shell surface are rougher, especially on the posterior slope and along the shell border. This species is also distinct from congenerics due to 14 fixed nucleotide substitutions in the COI gene fragment (Table
Tonle Sap Basin in Thailand and Cambodia (
Originally, Songkhlanaia moreleti was described based on a partially misidentified specimen from Cambodia as Monocondylus tumidus Morelet, 1866 by
Pseudodon thomsoni Morlet, 1884 was described based on specimens collected from Cambodia by Auguste Jean-Marie Pavie. Later,
The molecular data examined in this study included individuals of S. moreleti solely collected from the headwater areas of the Tonle Sap Basin in Thailand. In fact, previous freshwater mollusk surveys of areas surrounding the Tonle Sap Lake in Cambodia by
Holotype
Thailand – Sakon Nakhon Province • Phang Khon District, Hai Yong Subdistrict, Songkhram Basin, Prahang River; 17.4376°N, 103.7569°E; 7 Apr. 2023; E. Jeratthitikul and W. Siriwut leg.;
Thailand – Nong Khai Province • 5 shells; Si Chiang Mai District, Nong Pla Pak Subdistrict, Mekong Basin, Nam Mong River; 17.8914°N, 102.5341°E; 7 Apr. 2015; E. Jeratthitikul, K. Wisittikoson, and P. Prasankok leg.;
Shell large, subrhomboidal to ovate, thick, rather inflated. Anteriorly constricted, dorsal slightly curved, slightly elevated posteriorly. Posterior slope with one or two faint folds. Umbo rounded, wide, moderately elevated. Shell surface with irregular growth lines, roughened on posterior slope and border of shell. Right valve with one smooth triangular or high tubercular pseudocardinal tooth, left valve with well-developed, rectangular, rather broad and high pseudocardinal tooth. V-shaped furrow on posterior end of hinge structure prominent and wide. Anterior adductor muscle scar impressed, somewhat droplet-like, separated from anterior protractor muscle scar. Umbo cavity moderately deep and wide.
This new species can be distinguished from S. moreleti by having well-developed pseudocardinal teeth (Fig.
Shell large-sized (shell length 104.7–120.5 mm, shell height 73.8–78.5 mm, shell width 46.2–55.3 mm; Table
Pseudocardinal teeth, left valve on the left-hand side, and right valve on the right-hand side A S. tamodienica, topotype
Shell measurements and GenBank accession numbers for the type series of Songkhlanaia songkhramensis sp. nov. Measurements in millimeters (mm).
Status of specimen | Specimen voucher | Shell dimensions (mm) | Genbank accession | ||||
---|---|---|---|---|---|---|---|
length | height | width | COI | 16S rRNA | 28S rRNA | ||
Holotype |
|
120.5 | 78.5 | 55.3 | PQ231674 | PQ236709 | PQ236725 |
Paratype |
|
116.4 | 76.2 | 47.9 | - | - | - |
Paratype |
|
109.8 | 76.3 | 53.5 | PQ231673 | PQ236708 | PQ236724 |
Paratype |
|
104.7 | 73.8 | 46.2 | - | - | - |
Inner side of shell: ligament long, narrow, dark brown in color. Pseudocadinal teeth one on each valve; smooth, triangular or high tubercular shape on right valve; well-developed, smooth, rectangular shape, rather broad and high on left valve; in shell coupling position, pseudocadinal tooth on right valve situated well anteriorly. Lateral teeth obsolete. Posterior end of hinge structure with wide V-shaped furrow. Anterior muscle scars impressed; anterior adductor muscle scar somewhat droplet-like, contiguous with anterior pedal retractor, but separated from anterior protractor muscle scars; pedal retractor muscle scar rounded, protractor muscle scar bean-shaped. Posterior adductor muscle scar large, drop-like to ovate, shallow. Pallial line well-marked and continuous. Umbo cavity deep, wide, with one row of 5–10 muscle scars. Nacre whitish blue to yellowish.
Siphon apertures with strip of dark pigmentation running along aperture edge. Exhalant aperture smooth, shorter than inhalant. Inhalant aperture with one row of conical papillae, varying in length, with more of the longer papillae near ventral edge. Small epithelial fold divides exhalant and inhalant aperture. Gills elongated and slightly ribbed; outer gills narrower than inner gills; anterior margin of inner gills slightly longer than outer gills. Labial palps elongate, somewhat pointed at tip. Glochidia unknown.
The species name songkhramensis refers to the Songkhram Basin, a sub-river basin of the Middle Mekong Basin in northeastern Thailand, in which this species is highly abundant. The type locality of the species is also situated in the Songkhram Basin.
The new species occurs in the Songkhram Basin and tributaries of the Mekong River in northeastern Thailand. It is a common freshwater mussel in the middle to upper part of Songkhram Basin (Fig.
Among the mussel species commonly found sympatrically with S. songkhramensis sp. nov., Thaiconcha callifera is the most similar in overall shell features, and thus may confuse the identification. However, the new species can be easily distinguished from T. callifera by its thick shell (vs moderately thick), subrhomboidal to ovate shape (vs elliptical or rounded shape), higher shell (vs somewhat elongate), wider and more elevated umbo (vs narrow and slightly elevated), less shiny shell (vs somewhat shiny shell), shell surface sculptured with irregular growth lines, heavily roughened on the posterior slope (vs shell surface rather smooth, with fine growth lines, slightly roughened on the posterior slope), and rectangular and rather broad pseudocardinal teeth (vs tubercular pseudocardinal teeth) (
This study integrated molecular evidence, shell morphology, and biogeography into the identification of two additional species in the Songkhlanaia. One is a new combination of the previously recognized nominal taxon, S. moreleti, while the other is a new species from the Middle Mekong Basin, namely S. songkhramensis sp. nov. The discovery of the new species adds to the known diversity of the tribe Pseudodontini, making it the most speciose tribe of the Unionidae in Southeast Asia, with a total of 51 species across eleven genera, more than the 35 species in Contradentini and the 28 species in Gonideini (
Members of the Pseudodontini share common characteristics of the obsolete lateral teeth and the single pseudocardinal tooth on each valve, which can be represented as either weakly or well-developed knob-like pseudocardinal teeth. Meanwhile, other conchological traits exhibit a broad range of variability, and species in the taxon range from having thin and ultra-elongate shells to rather thick and rounded shells (
Multi-locus phylogenetic analysis (COI + 16S rRNA + 28S rRNA) in this study recovered members of Songkhlanaia as a well-supported clade (Fig.
Alternatively, the unclear relationships among genera within the Pseudodontina might be attributed to rapid radiation within the group, where lineages may have undergone a series of speciation events in a relatively short period of time. This phenomenon could result in a complex evolutionary history that complicates the resolution of phylogenetic trees with certain features such as short internal branches and poorly supported nodes, as evidenced in other groups of animals (e.g.,
We thank S. Klomthong, K. Wisittikoson, members of Animal Systematics and Molecular Ecology Laboratory Mahidol University (ASME lab), and members of Animal Systematic Research Unit (ASRU), Chulalongkorn University for their assistance in collecting samples, and extend our thanks to D.J. Anderson for grammar checking and comments. The CIPRES Science Gateway V3.3 provided access to computational analysis.
The authors have declared that no competing interests exist.
The animal uses in this study have been approved by the Faculty of Science, Mahidol University Animal Care and Use Committee, SCMU-ACUC (MUSC65-013-606 and MUSC66-016-646).
This study has been supported by the Centre of Excellence on Biodiversity (BDC), Office of Higher Education Commission (BDC-PG1-166001) and the National Research Council of Thailand (NRCT) (N34E670115).
EJ and CS developed the concept of the study. EJ and PP collected specimens and conducted molecular analyses. EJ performed phylogenetic analyses and prepared taxonomic accounts with input from CS. CS prepared shell images. EJ prepared the manuscript and all illustrations. All authors discussed, gave input and acknowledged the final version of the manuscript.
Ekgachai Jeratthitikul https://orcid.org/0000-0002-3477-9548
Chirasak Sutcharit https://orcid.org/0000-0001-7670-9540
Pongpun Prasankok https://orcid.org/0000-0001-5967-223X
All of the data that support the findings of this study are available in the main text or Supplementary Information.
List of voucher specimens with GenBank accession numbers used in phylogenetic analysis
Data type: docx