Research Article |
Corresponding author: Vlada K. Peneva ( esn.2006@gmail.com ) Academic editor: Sergei Subbotin
© 2017 Milka Elshishka, Stela Lazarova, Georgi Radoslavov, Peter Hristov, Vlada K. Peneva.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
lshishka M, Lazarova S, Radoslavov G, Hristov P, Peneva VK (2017) Biogeography and phylogenetic position of Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. from Maritime Antarctic (Nematoda, Nordiidae). ZooKeys 697: 37-58. https://doi.org/10.3897/zookeys.697.13770
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The taxonomic position of the endemic Antarctic species Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975) is discussed on the basis of morphological study, including SEM, morphometric data, postembryonic observations, and sequence data of 18S rDNA and the D2-D3 expansion fragments of the large subunit rDNA. A number of characters such as the cuticle and stoma structures, including the presence of moderately developed cuticularised ring around the oral aperture, peculiarities of pharynx expansion, size and position of the posterior pair of pharyngeal nuclei, a less complex uterus, and the position of a posterior ventromedian supplement show that this species differs substantially from the other members of the genus Enchodelus. Furthermore, both the 18S and 28S rDNA-based phylogenetic trees of the Enchodelus sequences available in the GenBank formed two distinct clusters with E. signyensis being a part of a well-supported group with species of the genus Pungentus; therefore, it is proposed that its taxonomic position should be reconsidered.
Distribution, morphology, SEM, SNPs, taxonomy, 18S and D2-D3 rDNA
Antarctic represents unique types of habitats – polar deserts, caused by its geological history, harsh climate conditions, and remoteness. Therefore, terrestrial Antarctic biota, including nematodes, is characterised by a very high degree of endemism and low diversity (
Samples were collected from Livingston Island by Dr. N. Chipev (IBER), Dr. R. Mecheva (IBER), D. Apostolova (Sofia University) and from King George Island by Dr. R. Zidarova (Sofia University) during the regular Bulgarian Antarctic Expeditions (2006-2016). Nematodes were extracted from soils and plant materials by a Baerman funnel method (
Specimens used for SEM observations were rinsed in 0.1 M cacodylate buffer (twice for 10 min), post-fixed in 1% OsO4 for 2 h, washed twice for 10 min in 0.1 M cacodylate buffer and dehydrated in an ethanol series (
The locations of pharyngeal gland nuclei are given following
Genomic DNA was extracted from two female specimens per species using a standard nematode digestion protocol (
The 18S and D2-D3 28S rDNA sequences were compared with those of other nematode species available at the GenBank sequence database using BLASTN similarity search tool. The sequences revealing the highest similarity were used for sequence and phylogenetic analyses (
Twenty-eight females and twenty-one juveniles (J1-J4) from Livingston and King George Islands (Table
Origin of the examined materials of Enchodeloides signyensis gen. n., comb. n.
Site description | Collection year | Abbreviation |
---|---|---|
King George Island (KGI) | – | – |
Fildes Peninsula /Moist brown soil without vegetation, surrounded by moss | 2013 | KGI_F |
Livingston Island (LI) | – | – |
Svetilishteto | 2006–2007 | LI_SV |
Playa Bulgara /Mosses | 2008 | LI_M |
Punta Hesperides /Soil under moss crust | 2010 | LI_PH |
Punta Hesperides /Soil | 2016 | LI_PH_n |
Measurements. See Table
Morphometrics of Enchodeloides signyensis gen. n., comb. n. (females). All measurements, unless indicated otherwise, are in µm (and in the form: mean±SD (range)).
Locality | King George Island | Livingston Island | |||
---|---|---|---|---|---|
Characters | KGI_F | LI_SV | LI_PH | LI_M | LI_PH_n |
n | 7 | 4 | 3 | 12 | 2 |
L (mm) | 1.59±0.1 (1.47–1.66) | 1.45±0.05 (1.39–1.49) | 1.43; 1.51; 1.44 | 1.35±0.1 (1.20–1.45) | 1.27, 1.37 |
a | 28.9±1.9 (26.9–32.8) | 28.1±1.2 (26.7–29.5) | 28.5; 31; 27 | 29.5±1.4 (27.6–32.4) | 26.1, 28.2 |
b | 5.3± 0.3 (4.7–5.6) | 4.8± 0.2 (4.6–4.9) | 5; 5; 4.8 | 4.5± 0.2 (4.2–4.8) | 4.1, 4.6 |
c | 43.7±2.1 (40.6–46.9) | 48.2±3.1 (43.8–50.7) | 49.3; 48; 44.8 | 43.7±3.9 (37–50) | 50.1, 53.2 |
c‘ | 1.0±0.04 (1.0–1.1) | 1.0±0.1 (0.9–1.0) | 0.9; 1.0; 1.0 | 1.0±0.1 (0.8–1.1) | 0.9, 0.9 |
V % | 50.4±0.7 (49.5–51.5) | 53.8±1.3 (52–55) | 51; 54; 53 | 54.4±1.0 (52–56) | 55, 56 |
Lip region diameter | 14.3±0.4 (14–15) | 14.2±0.2 (14–14.4) | 14; 14; 15 | 14.1±0.7 (13–15) | 14, 13 |
Odontostyle length | 19.9±0.8 (19–21) | 18.9±0.7 (18–19.5) | 19; 20; 20 | 19.2±0.8 (18–20) | 18, 19 |
Odontophore length | 25.2±0.8 (24–26.5) | 26.5±0.4 (26–27) | 25; 23.5; 25 | 26.4±2.8 (22–32) | 27, 26 |
Anterior end to guiding ring | 12.0±0.7 (11–13) | 12.6±0.3 (12–13) | 12; 11; 12 | 12.1±0.6 (11–13) | 12, 12 |
Pharynx length | 297.8±11.4 (277–310) | 304.0±3.8 (302–308) | 283; 301; 297 | 302.2±11.8 (271–314.5) | 307, 300 |
Pharyngeal base diameter | 51.5± 3.8 (45–55) | 46.7±2.4 (44–49) | 47; 45; 47.5 | 43.3± 2.9 (38–46.5) | 45, 45.5 |
Mid-body diameter | 55.2±3.5 (50–60) | 51.8±1.8 (49–54) | 50; 49; 53 | 45.9±3.8 (39–51) | 48, 48.5 |
Prerectum length | 104.2±32.2 (72–166) | – | 71 | 84.5±24.5 (62–128) | -, 75 |
Rectum length | 36.4±3.0 (32–40) | 32, 46 | 30.5; 37; 41 | 33.4±2.0 (31–36.5) | -, 37.5 |
Tail length | 36.4±2.1 (32–39) | 30.3±2.7 (28–34) | 29; 31.5; 32 | 31.2±3.4 (25–35) | 25, 26 |
Female. Habitus curved ventrally after fixation, adopting a C-shape. Cuticle consisting of four layers with different refraction, the outer two layers thinner, the second outer with stronger refraction, the inner layers thicker, especially at tail region. Cuticle 2–3 µm thick at postlabial region at the level of the guiding ring, 2–4 µm at mid-body and 4–6 µm on tail; outer layer with very fine transverse striations, innermost layer coarsely striated (Figs
Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975). Female: A–E Anterior region (A, B specimens from Livingston Island C, D, E specimens from King George Island), black arrows indicate the minute basal swellings F, G Amphideal fovea (E specimen from Livingston Island G specimen from King George Island) H, I Entire body J, K Pharyngeal bulb (J specimen from Livingston Island K specimen from King George Island) L Posterior genital branch (specimen from Livingston Island) M Uterus (specimen from Livingston Island) N–Q Vulval regions (N, O specimens from Livingston Island P, Q specimens from King George Island). Scale bars: 10 μm (A–G, J, K, M–Q); 200 μm (H, I); 20 μm (L).
Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975). Female: A–D Tail ends (A specimen from King George Island; B, C, D specimens from Livingston Island) E–G Tail ends with saccate bodies (E specimen from King George Island F, G specimens from Livingston Island). Scale bar: 10 μm.
SEM micrographs. Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975). Female: A, D, E Lip region, in face view, amphid aperture B, F Lip region, in sublateral view C Cephalic and labial papillae G–I Vulval region J–L Tail ends. Scale bars: 2 μm (A, C, D, E, F, G); 5 μm (B, I, J); 10 μm (L).
Morphometrics of Enchodeloides signyensis gen. n., comb. n. (juveniles). All measurements, unless indicated otherwise, are in µm (and in the form: mean±SD (range)).
Locality | Livingston Island | King George Island | ||||
---|---|---|---|---|---|---|
Characters | LI_S | LI_M | LI_PH_n | KGI | ||
Stages | J1 | J2 | J3 | J4 | J4 | J4 |
n | 6 | 1 | 1 | 7 | 1 | 4 |
L (mm) | 0.40±0.1 (0.37–0.42) | 0.60, 0.62 | 0,7 | 1.02±0.1 (0.93–1.13) | 1.03 | 1.23±0.1 (1.07–1.34) |
a | 26.5±1.1 (24.7–27.9) | 27.0, 27.5 | 27 | 28.9±1.8 (26.8–31.7) | 26.9 | 28.3±1.6 (26.9–30.4) |
b | 3.2±0.5 (2.9–4.2) | 3.6, 3.8 | 3,5 | 3.9± 0.2 (3.7–4.1) | – | 4.9, 5.2 |
c | 13.6±0.9 (12.8–14.8) | 24.7, 26.2 | 27,6 | 36.8±2.3 (33.7–39.6) | 35.5 | 39.0±2.7 (36.5–42.8) |
c‘ | 2.8±0.2 (2.6–3.1) | 1.5, 1.5 | 1,4 | 1.1±0.1 (1.0–1.2) | 1.1 | 1.0±0.05 (1.0–1.1) |
Lip region diameter | 7.3±0.2 (7–7.5) | 8.5, 8 | 11 | 11.8± 0.3 (11–12) | 11 | 12.2±0.4 (12–12.5) |
Odontostyle length | 6.6±0.4 (6–7) | 8, 8 | 11 | 14.7±0.2 (14–15) | 15 | 15.6±0.2 (15–16) |
Replacement odontostyle length | 8.2±0.2 (8–8.3) | 11, 10 | 14 | 18.5±0.4 (18–19) | 20 | 19.3±0.9 (18–20) |
Pharynx length | 126.2±15.9 (95–140) | 165.5, 163 | 200.5 | 258.8±14.2 (244–281) | – | 207, 249 |
Pharyngeal base diameter | 16.0±0.3 (15.6–16.3) | 23, 23 | 27 | 35.3±2.5 (32–40) | 36 | 40.5±3.1 (37–44) |
Mid-body diameter | 15.0±0.4 (14–15.5) | 22, 23 | 26 | 35.4±2.9 (31–40) | 38.5 | 43.4±4.3 (40–47) |
Prerectum length | 35 | – | – | 87, 110 | – | 76, 86, 82 |
Rectum length | 14,5 | – | – | 25.5±2.7 (21.5–28.5) | 26 | 33, 30, 35 |
Tail length | 29.6±2.2 (27–31) | 24, 24 | 25 | 27.7±1.2 (26–30) | 29 | 31.4±2.1 (29–34) |
Pharyngeal characters of Enchodeloides signyensis gen. n., comb. n. For abbreviations see Loof & Coomans (1970) and Andrássy, 1998b.
LI_ | LI_PH | LI_S | KGI_F | |
---|---|---|---|---|
DN=D | 67–70 | 69 | 72, 68 | 63–67 |
DO | 64, 64, 62 | 63 | 66, 62 | 55–63 |
S1N1 | – | – | 80 | – |
S1N2 | – | – | 79 | – |
S2N | 89–91 | 90, 91 | 92, 90 | 89–90 |
S2O | 92 | – | 93 | 90, 91 |
AS1 | – | – | 37 | – |
AS2 | – | – | 35 | – |
PS1 | 65–71 | 70 | 71, 68 | 67–74 |
PS2 | 66–72 | 68 | 70, 69 | 67–72 |
Juveniles. Based on morphometrics of juvenile specimens and the relationships between the lengths of their functional and replacement odontostyles and body lengths, four juvenile stages were identified (Figs
Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975). Juveniles: A–D Anterior ends (J1-J4) (specimens from Livingston Island) Female (specimen from Livingston Island) E Anterior end F Amphideal fovea G Pharyngeal bulb. Enchodelus groenlandicus (Ditlevsen, 1927) H Pharyngeal bulb. Scale bar: 50 μm.
Sequences and phylogenetic analyses. The phylogenies based on both gene regions showed that Enchodelus sp. and E. signyensis are parts of two distantly related and well-supported groups (I and II), and in both analyses, they revealed similar relationships with other dorylaimid species (Figs
Phylogenetic relationships of Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975) based on 18S rDNA inferred from a Bayesian analysis (GTR+G model) and two Aporcelaimellus species used as an outgroup. * Thonus is currently considered a synonym of Crassolabium (Peña-Santiago and Ciobanu, 2008).
Phylogenetic relationships of Enchodeloides signyensis (Loof, 1975), gen. n., comb. n. (= Enchodelus signyensis Loof, 1975) based on 28S rDNA D2-D3 inferred from a Bayesian analysis (GTR+G model) and two Aporcelaimellus species used as an outgroup. * Thonus is currently considered a synonym of Crassolabium (Peña-Santiago & Ciobanu, 2008).
The estimates of evolutionary divergences (p-distances) between D2-D3 28S rDNA sequences within and between both groups are presented in Table
Genetic distances using D2-D3 28S rDNA sequence data (p-distances given in percents). Pair-wise comparisons are based on alignment with 790 nucleotide positions (all positions containing gaps were eliminated).
Sequence number/species | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |
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1 | KY881719E. signyensis gen. n., comb. n., Antarctica | |||||||||
2 | AY593050Pungentus engadinensis (Altherr, 1950) Altherr, 1952 | 7.6 | ||||||||
3 | AY593052Pungentus silvestris (de Man, 1912) Coomans & Geraert, 1962, 1 NL | 7.4 | 2.7 | |||||||
4 | AY593053P. silvestris 2, NL | 7.5 | 2.8 | 0.1 | ||||||
5 | AY593054Enchodelus macrodorus (de Man, 1880) Thorne, 1939, NL | 7.5 | 2.8 | 0.1 | 0.3 | |||||
6 | KY766260Enchodelus sp., Bulgaria | 17.1 | 17.3 | 16.0 | 16.2 | 16.2 | ||||
7 | EF207240Enchodelus sp., NL | 16.6 | 16.1 | 14.9 | 15.0 | 15.0 | 6.5 | |||
8 | KP190119E. longispiculus Guerrero, Liébanas & Peña-Santiago, 2008, Iran | 17.0 | 17.1 | 15.9 | 16.0 | 16.0 | 0.8 | 6.3 | ||
9 | KP190120Enchodelus sp. 1, Iran | 17.1 | 17.3 | 16.0 | 16.2 | 16.2 | 1.5 | 7.1 | 1.2 |
Based on the main morphological characters, the studied populations are very similar, but specimens from King George Island differ by a somewhat longer (average 1.47–1.66 vs 1.20–1.51 mm), and wider body (55.2 ± 3.5 (50–60) µm vs 48.0±3.9 (39–54) µm), longer female genital branches (anterior 298.3±31.9 (245–330) µm and posterior 323.1 ± 46.4 (243–361) µm vs 236.2 ± 23.3 (186–275) µm and 208.2 ± 34.4 (143–259) µm, respectively, vulva position (V=50.4 ± 0.7 (49.5–51.5)% vs V=54.1±1.3 (51–56)%), and tail (32–39 vs 25–35 µm). The specimens examined generally agree well with data previously reported for this species (
Nordiidae. Nematodes of medium size. Cuticle dorylaimoid, consisting of four layers, outer layer finely, inner layer coarsely transversally striated. Lip region angular; stoma entrance surrounded by a moderately developed cuticularised ring, appearing as small perioral refractive dots. Amphidial fovea cup-shaped, its aperture about half of lip region diameter, curved. Odontostyle short and slender, straight. Odontophore with small swellings. Guiding ring double. Anterior region of pharynx enlarging gradually into pharyngeal expansion. Posterior pair of pharyngeal nuclei smaller than dorsal nucleus, located posteriorly in pharyngeal expansion. Cardia rounded conoid. Female genital system amphidelphic. Uterus not differentiated. Vagina moderately sclerotised. Vulva a transverse slit. Males rare. Spicula stout ventrally curved. Lateral guiding pieces present. Sperm cells spindle-shaped. Supplements 2 to 4 in number preceded by an ad-cloacal pair of papillae, starting far behind the level of the spicules. Tail bluntly conoid, with numerous saccate bodies on tail. First juvenile stage with elongate conical tail with long central peg.
The new genus resembles members of the subfamily Pungentinae Siddiqi, 1969, especially the genera Enchodelus, Pungentella Andrássy, 2009, Pungentus and Stenodorylaimus Álvarez-Ortega & Peña-Santiago, 2011. It differs from Enchodelus by having lip region with six radial striae starting from inner and ending at outer labial papillae vs absent (seen under SEM), four vs three layered cuticle, two vs one thicker inner layer at tail region (under light microscopy), cheilostom thin walled vs thick walled, a moderately developed cuticularised ring around the oral aperture vs absent; less developed vs well developed basal swellings; a pharynx enlargement gradually expanding vs abruptly expanding into basal expansion (Fig.
Consequently, the new combination Enchodeloides signyensis (Loof, 1975) is proposed to accommodate the only nordiid species occurring in Maritime Antarctic.
Enchodeloides signyensis is a widespread endemic for the Maritime Antarctic, occurring in several islands: Signy (
Distribution of Enchodeloides signyensis gen. n., comb. n. in Antarctic islands and habitats.
Island | Microhabitats and plant associations | References |
Signy | Tortula excelsa Card (type host) Deschampsia antarctica Desv. Colobanthus quitensis (Kunth) Bartl. |
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Polytrichastrum alpinum (Hedwig), Chorisodontium aciphyllum (Hook. f. & Wilson) Broth., Sanionia uncinata (Hedw.), Calliergon sarmentosum (Wahlenb.), Calliergidium austro-stramineum (C. Muell.) Bartr. |
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P. alpinum, Ch. aciphyllum, S. uncinata, C. sarmentosum, Cephaloziella varians (Gottsche) Steph., soils contaminated by vertebrate, e.g. close to seabird nests |
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Coronation | D. antarctica |
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Elephant | D. antarctica Polytrichum sp. | |
Galindez | D. antarctica | |
Blaiklock | P. alpinum, Pohlia nutans (Hedw.) | |
Alamode | S. uncinata | |
Moss |
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Dream | Moss mats with green algae |
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Charcot | Soil, moss clumps, algae, various lichens |
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Moss, lichen and soil |
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Livingston | D. antarctica, S. uncinata, Sanionia georgico-uncinata (Müll. Hal.) Ochyra & Hedenäs, C. quitensis, P. alpinum, Bryum sp., Usnea sp., Cladonia sp., Polytrichum juniperinum Hedw., Bartramia patens Brid. |
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Moss; soil under moss crust; soil | Present study | |
Alexander | Moss; lichen; soil; microbial mat |
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King George | D. antarctica, C. quitensis, Sanionia sp., Syntrichia filaris (Müll.Hal.), Syntrichia magellanica (Mont.) |
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Moist brown soil without vegetation, surrounded by moss | Present study |
This study was funded by the project № 64/27.04.2016, the program for career development of young scientists, Bulgarian Academy of Sciences. The authors are thankful to Dr. R. Zidarova, Dr. N. Chipev, Dr. R. Mecheva, and D. Apostolova for collecting the samples, to Mr. N. Dimitrov (Faculty of Chemistry and Pharmacy, Sofia University) for his assistance with SEM photographs. The authors are thankful to Dr Nathalie Yonow from Swansea University, Wales, UK for critical reading of the manuscript and helpful suggestions.
18S Parsimoni informative sites TemporaryMEGA17
Data type: (nucleotide)
Explanation note: 18S rDNA Phylogenetic analysis between tree Genus based on Parsimony informative nucleotide sites.
28S Parsimoni informative sites TemporaryMEGA15
Data type: (nucleotide)
Explanation note: 28S rDNA Phylogenetic analysis between tree Genus based on Parsimony informative nucleotide sites.