Research Article |
Corresponding author: Jeremy Horowitz ( jerhorowitz@gmail.com ) Academic editor: James Reimer
© 2025 Jeremy Horowitz, Mina Barajas, Luke J. McCartin, Samuel A. Vohsen, Santiago Herrera.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Horowitz J, Barajas M, McCartin LJ, Vohsen SA, Herrera S (2025) Description of a new species of Stauropathes (Anthozoa, Antipatharia, Schizopathidae) from Puerto Rico. ZooKeys 1231: 331-346. https://doi.org/10.3897/zookeys.1231.136967
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A new species of black coral, Stauropathes monopinnata sp. nov., represented by two specimens collected 738 m and 1604 m deep off Puerto Rico and Hawaii, respectively, is recognized in the family Schizopathidae. The new species is characterized by a monopodial, unbranched corallum; simple, suboppositely arranged pinnules in two anterolateral rows along the stem with nearly 90° distal angles, spaced 12–17 mm apart in a row, and with smooth and triangular spines 0.05–0.08 mm tall; and polyps 4–9 mm in transverse diameter. A phylogeny composed of 90 taxa representing species in Schizopathidae and Cladopathidae (rooted in Cladopathidae) was reconstructed from 794 nuclear loci to show their systematic relationships. Herein, we provide morphological and molecular evidence to show that this new species is distinct from other species in the genus Stauropathes.
Black coral, genome skimming, molecular phylogenetics, morphology, targeted capture, taxonomy, ultra-conserved elements
Black corals are a group of hexacorals that occur in all oceans (except northern Arctic Ocean and hydrothermal vents) and depths from just below the surface to 8600 m. The taxonomy of black corals is undergoing an order-wide taxonomic review with novel data like next-generation sequencing techniques, which are providing greater phylogenetic resolution than single locus or even full mitochondrial genomes (
During the Schmidt Ocean Institute expedition FKt230417, titled ‘Health Diagnostics of Deep-Sea Coral’, 74 black corals were collected from the deep waters off Puerto Rico. This collection recently led to the discovery of new species representing a novel genus and family (
The holotype was collected at Whiting Bank, 25 km southeast of Puerto Rico, 738 m deep during the Schmidt Ocean Institute expedition FKt230417 entitled: ‘Health diagnostics of deep-sea coral’ (Fig.
The morphological characters of the specimens representing the new species were compared with nominal and currently accepted species in the genera Bathypathes and Stauropathes.
The skeletal spines were examined by cutting small fragments of the skeleton and removing the tissue with bleach and a sonicator. The fragments were then mounted on stubs and coated with a 30–40 nm thick layer of 60% gold: 40% palladium and imaged using a Zeiss EVO MA 15 scanning electron microscope (SEM). SEM stubs are deposited at the
We define the distinction between pinnule and pinnulated branch based on the similarity or dissimilarity of branching patterns at successive branch or ramification orders. If a ramification exhibits the same pinnulation pattern and length as its immediate lower-order ramification, it is a pinnulated branch, and its pinnules are first-order pinnules (Fig.
DNA was extracted from the holotype specimen USNM 1689279 alongside all specimens collected in Puerto Rico using the AutoGen GenePrep (AutoGen, Holliston, MA, USA) in the Laboratories of Analytical Biology (LAB) at the
For the paratype specimen from Hawaii (USNM 1424060) and all other specimens that were collected outside Puerto Rico waters, DNA was extracted with the DNeasy Blood and Tissue Kit (Qiagen, Germany), cleaned with the Qiagen Power Clean Pro kit, and concentrations were estimated using a High Sensitivity Qubit 4 Fluorometer (Invitrogen, US). High molecular weight DNA was sheared using a QSonica Inc Sonicator Q800R to a target size range of 400–800 bp and then checked via gel electrophoresis on a 1.5% agarose gel. Afterwards, DNA libraries were prepared with the Kappa Hyper Prep protocol using a ½ reaction with iTruSeq adapters and dual indexes (
For all specimens included in this study, DNA extraction and library preparation were conducted at LAB. Paired-end sequencing (150 bp) was performed on an Illumina - NovaSeq X Plus at the Oklahoma Medical Research Foundation Genomics Facility with other samples to obtain 10M paired-end (PE) reads (150 bp) per sample. Raw reads are deposited in the short read archive (SRA) of the National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/).
The conserved loci were obtained from the high-throughput sequencing data. Raw reads were trimmed using Trimmomatic v. 0.35 (
Corallum monopodial, unbranched or branched and pinnulate to the first order. Pinnules in two lateral or anterolateral rows and arranged in subopposite pairs. Spines smooth, triangular, and laterally compressed. Polyps 3–9 mm in transverse diameter.
Stauropathes staurocrada Opresko, 2002 (by original designation).
North-central Pacific Ocean.
This study demonstrates that the unbranched corallum with bilateral and subopposite pinnules is polyphyletic, occurring in the genera Bathypathes and Stauropathes, warranting emendation to the generic diagnosis for Stauropathes. Further, the two genera do not form monophyletic groups, where Stauropathes spp. (CMNI 2023-0258, USNM 1404493, and USNM 1424220) fall into the clade that consists of a majority of Bathypathes, while Bathypathes alaskensis Opresko & Molodtsova, 2021 (USNM 1013749) falls into the clade that consists of a majority of Stauropathes. Another finding of this study is that Telopathes is not polyphyletic, contradicting
Holotype • USNM 1689279, Whiting Bank, Puerto Rico, 17.8398°N, 65.6976°W, 738 m depth. Schmidt Ocean Institute R/V Falkor (too), FKt230417, Health diagnostic of deep-sea coral, ROV SuBastian dive 518, April 29, 2023 (SEM stub No. 538). Paratype • USNM 1424060, 250 km southeast of Midway Atoll, Hawaii, 26.65°N, 175.4°W, 1604 m depth. NOAA (National Oceanic and Atmospheric Administration) R/V Okeanos Explorer, Cruise EX1603, Hohonu Moana: Exploring Deep Waters off Hawaii, ROV Deep Discoverer dive 5, March 5, 2016 (SEM stub 539).
Whiting Bank, Puerto Rico, 738 m depth.
Corallum monopodial, planar, unbranched, and pinnulate to the first order. Pinnules in two anterolateral rows and arranged in subopposite (almost opposite) pairs. Lowermost pinnules on stem 8 cm or more in length, decreasing in length towards apex of colony. Spines smooth and triangular with a rounded apex, 0.05–0.08 mm tall. Polyps 4–9 mm in transverse diameter, 2–3 mm interpolypar space, four to eight polyps counted per 5 cm.
The holotype (USNM 1689279) is a 15 cm tall monopodial colony (Fig.
Stauropathes monopinnata sp. nov. holotype: USNM 1689279 A collected colony with B blue rectangle showing zoomed-in view of pinnule pattern C in situ image of colony D in situ image of colony showing zoomed-in view of polyp characteristics E section of pinnule showing polyp characteristics.
Polyps are arranged in a single row (Fig.
Spines (Fig.
The paratype (USNM 1424060) is a 14 cm tall colony (lowermost section of stem not collected) and the pinnulated section of stem is 12 cm (Fig, 5A). Based on in situ imagery (https://data.oceannetworks.ca/SeaTube?resourceTypeId=1000&resourceId=23621&diveId=3000&time=2016-03-06T00:56:55.000Z), the whole colony was approximated to be ~25 cm in length and the unpinnulated section of stem was ~7 cm in length. Striatum is present and distinct from the lower broken-off end of the stem to the lowermost pair of pinnules. Pinnules are simple, arranged in anterolateral rows and in subopposite pairs (Fig.
Maximum likelihood phylogeny of antipatharians of the families Schizopathidae and Cladopathidae based on a 50% complete matrix containing 794 loci. Taxa in green rectangle represent the holotype and paratype specimens of the new species. Ultrafast Bootstrap support values are 100% at all nodes unless noted with an asterisk (*). Red branches were artificially shortened and do not represent true branch length. The phylogeny rooted to Cladopathidae.
Polyps are arranged in a single row and are 4–6 mm in transverse diameter with an interpolypar space of 2 mm. Polypar density ranges from seven to eight per 5 cm. Based on in situ imagery, the tissue is dark red, and when preserved, it is brown to dark brown (Fig.
Spines are smooth, laterally compressed, and triangular with a rounded apex (Fig.
Both specimens possess simple pinnules with wide distal angles, arranged in slightly anterolateral rows, and in subopposite pairs that are almost opposite. Spacing between pinnules in one row is wide in both specimens: ≤ 1.7 cm in the holotype and ≤ 1.4 cm in the paratype, resulting in eight and ten pinnules per 5 cm. The spines on both specimens are short (≤ 0.06 mm tall), smooth, triangular with a rounded apex, and arranged in longitudinal rows, seven to eight of which are visible in lateral view. Tissue color is similar for both specimens; dark red in situ and a dark red-to-brown when preserved.
A minor difference between the holotype and paratype is that based on in situ footage, the paratype pinnules are more rigid than the holotype. A major difference between the holotype and paratype is their polyp characteristics, where the holotype has polyps 8–9 mm in transverse diameter with 0.2–0.3 mm interpolypar space, resulting in a density of four to five polyps per 5 cm, while the paratype’s smaller polyps are 4–6 mm in transverse diameter with 0.2 cm interpolypar space, resulting in a higher density of seven to eight per 5 cm. This is a notable difference that could be interpreted as the holotype and paratype representing different species. However, without additional specimens possessing similar morphological traits as these specimens with differing-sized polyps, it is premature to describe these two specimens as polyp size could vary within the species.
A total of 63–1052 conserved element loci were obtained per specimen. Total number of contigs ranged from 234,560 to 439,048,041 base pairs (bp) (average lengths ranged from 109 to 953 bp). The 50% taxon-occupancy matrix included 794 loci that were concatenated into an alignment with a total length of 385,232 bp. A 75% taxon-occupancy matrix, including 465 loci, was also run to compare results, and the topology in the region of the trees, including the new species, did not change. Read and locus summary statistics are detailed in Suppl. material
The two specimens representing the new species with 100% branch support fell sister to the clade containing Stauropathes staurocrada (USNM 98846 species- and genus-level holotype specimen, and USNM 1071042) (Fig.
Stauropathes monopinnata sp. nov. differs from the four other species in the genus morphologically. The most prominent difference is that the new species is unbranched whereas the other species are branched. The new species also has wider distances between pinnules in a row; reaching 1.7 cm in the holotype compared to a maximum of 1.2 cm in S. staurocrada and S. arctica (Lütken, 1871), and 0.8 cm in S. stellata and S. punctata. Four of the species in the genus possess small spine heights less than 0.07 mm (spine measurements were not reported for the type of S. punctata). The species however, differ in the number of rows of spines that can be seen in one lateral view of a pinnule. The number of rows for the new species (six to eight visible on a pinnule diameter of 0.25 mm) is greater than that for S. staurocrada (four to six on pinnule diameter of 0.28 mm) and S. stellata (three to four on pinnule diameter of 0.28 mm) and less than S. arctica (nine to ten on pinnule diameter of 0.34 mm). The new species also has polyps that are 4 to 9 mm in transverse diameter, equal to or larger than S. staurocrada (4 mm), and the range includes polyps of S. stellata (6 mm) and S. arctica (7 mm). The transverse diameter of the polyps was not reported for S. punctata. A complete comparison of the morphological features of Stauropathes species can be found in Table
Feature | S. monopinnata sp. nov. | S. monopinnata sp. nov. | S. staurocrada c | S. stellata d | S. punctata e | S. arctica f |
---|---|---|---|---|---|---|
holotypea | paratypeb | |||||
Corallum | unbranched | unbranched | branched | branched | branched | branched |
Stem length (cm) (pinnulated / unpinnulated) | 13 / 2 | 12 / 2 (unpinnulated section incomplete) | 13 / not collected | 6.3 / 6.1 | 21 / not collected | 20 / 5 |
Pinnule diameter near base (mm) | 1 | 1 | 1 | 0.5 | 1 | Not reported |
Pinnular angle (distal / interior) | 45–90°/ 160–180° | 80–90°/ 160–180° | 60–70°/ 90–150° | 80–90°/ 160–180° | 80–90°/ 160–180° | 80–90°/ 160–180° |
Distance between pinnules on one side (mm) | 13–17 | 12–14 | 8–12 | 5–10 | 6–8 | 12 |
Max Pinnule length (cm): | 8.3 | 8 | 2 | 5.5 | 1 | 3 |
Pinnule density per 5 cm (both rows) | 8 | 10 | 5–6 | 8 | Not reported | Not reported |
Number of orders of pinnules | 1 | 1 | 1 | 1 | 1 | >1?g |
Spine height (mm) | 0.03–0.05 | 0.03–0.06 | 0.04–0.06 | 0.06–0.07 | Not reported | 0.02–0.06 |
Spine ornamentation | Smooth | Smooth | Smooth | Smooth | Not reported | Smooth |
Number of spine rows per view | 6–7 | 7–8 | 4–6 | 3–4 | Not reported | 9–10 |
Space between spines in one row (mm) | 0.12–0.17 | 0.11–0.44 | 0.12–0.24 | 0.21–0.33 | Not reported | 0.06–0.12 |
Spine density per 1 mm | 4–5 | 4 | 8 | 4–6 | Not reported | 5 |
Polyp transverse diameter (mm) | 8–9 | 4–6 | 2–4 | 5–6 | Not reported | 3–7 |
Polyp density per 5 cm | 4–5 | 7–8 | 10–11 | 6–7 | Not reported | Not reported |
Number of polyps between adjacent pinnules in the same row | 2 | 2 | 2 | Not reported | Not reported | Not reported |
Striatum | Lowest section not collected | Striations present until first row of pinnules | Present | Present from 2 cm above basal plate and extends 4 cm | Not reported | Not reported |
While the lack of branches and the two rows of subopposite pinnules in the new species is typical of Bathypathes species, it differs morphologically in several ways: the distances between the members of each subopposite pair are smaller, and in some cases, the pinnules are almost opposite; the colonies have wider spaces between pinnules in a row, and the longest pinnules are also the lowermost ones on the stem.
The specific name derives from the Latin “mono” (one) and “pinnata” (feathered) referring to the new species general appearance due to the distinctive lack of branches compared to the other species in the genus.
Known from North Central Atlantic Ocean to North Pacific Ocean from 738 to 1604 m depth.
This study presents morphological and molecular evidence to support the description of a new species within the genus Stauropathes. Furthermore, this study provides the most speciose molecular phylogeny of the family Schizopathidae to date, including specimens representing all 13 accepted schizopathid genera, holotypes or paratypes of 20 species, five of which also represent types at the genus level, and 12 species sequenced for the first time.
The new Stauropathes species, which lacks branches (like Bathypathes), required an emendation of the diagnosis of Stauropathes to include unbranched morphotypes. Additionally, the finding of one Bathypathes species in the Stauropathes clade and two Stauropathes species in the Bathypathes clade suggests they have a complicated evolutionary history, possibly driven by convergent evolution or hybridization.
Speciation is complex, and the phylogenetic models used in black coral studies have relied on maximum likelihood analyses with General Time Reversible substitution model, which does not account for processes like hybridization, recombination, or site-specific variation in substitution rates (
The authors wish to thank W. Keel, W. Moser, and K. Reed for their assistance during visits to the Museum Support Center at the
The authors have declared that no competing interests exist.
No ethical statement was reported.
This project was funded in part by the Smithsonian Institution Barcode Network.
Conceptualization: JH. Data curation: JH, LJM, SH. Formal analysis: JH, LJM. Funding acquisition: SH. Investigation: LJM, SAV, MB, JH. Methodology: LJM, SH, MB, JH. Project administration: JH. Supervision: JH, SH. Validation: LJM. Visualization: MB, SH. Writing – original draft: LJM, JH, SH, MB, SAV. Writing – review and editing: LJM, JH, SAV, MB.
Jeremy Horowitz https://orcid.org/0000-0002-2643-5200
Luke J. McCartin https://orcid.org/0000-0001-5374-3148
Samuel A. Vohsen https://orcid.org/0000-0003-1710-292X
Santiago Herrera https://orcid.org/0000-0001-7204-9434
Raw sequence reads were submitted to GenBank under BioProject # PRJNA1078781. Bioproject and biosample information for all specimens are listed in Suppl. material
Read and locus summary statistics for all specimens included in the study
Data type: xlsx