Research Article |
Corresponding author: Abdul-Rahim Azman ( abarahim@gmail.com ) Academic editor: Kai Horst George
© 2024 Chaichat Boonyanusith, Koraon Wongkamhaeng, Abdul-Rahim Azman.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Boonyanusith C, Wongkamhaeng K, Azman A-R (2024) Sipadantonius roihani gen. et sp. nov., a new genus and species of Pseudocyclopidae Giesbrecht, 1893 (Copepoda, Calanoida) from the marine cave “Turtle Tomb” of Sipadan Island, Sabah, Malaysia. ZooKeys 1219: 303-329. https://doi.org/10.3897/zookeys.1219.133132
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A new genus and species of the family Pseudocyclopidae, Sipadantonius roihani gen. et sp. nov., was described based on specimens collected using a light trap in the marine cave of Sipadan Island, Sabah, Malaysia. The new genus is most related to Pinkertonius, primarily based on the similarity observed in the armament of ancestral segment IV of the male antennules, the armament of the female P5 Exp-3, the segmentation of the male P5, the armament of the maxillular basal exite, and the relative length of the ancestral segment XXVII of the antennules. Nevertheless, it distinguishes itself from Pinkertonius and all other genera of the family by the absence of the lateral seta of the basis of all swimming legs, the presence of an inner seta on the coxa of the female P5, the reduction of furcal setae I and III, as well as the specific armament of the ancestral segment XX of the antennules and the maxillular coxal endite. The female of Sipadantonius roihani gen. et sp. nov. has aesthetascs on the ancestral segments IV and XX of the antennules, as well as six setae on the maxillular coxal endite, exhibiting the most plesiomorphic characteristics of the family Pseudocyclopidae. The latter characteristic has not been recorded in the order Calanoida. It was hypothesised that the new species was a particle feeder living in the pelagic zone of the marine cave. The existence of the new species supported the assumption that the regional distribution of the family Pseudocyclopidae exhibited the Tethyan track, which might have been the subsequent result of the colonisation of the habitats prior to the closure of the Tethys Sea.
Crustacea, Southeast Asia, systematics, taxonomy, Zooplankton
Based on the phylogenetic research conducted by
Pseudocyclopid copepods are prevalent in shallow benthopelagic or anchialine cave habitats within tropical and subtropical marine waters globally, as documented by various researchers (e.g.,
In the past decade, a great deal of research was conducted regarding the zooplankton ecosystem of Malaysian waters (
Morphologically, the new species appeared to resemble the genus Pinkertonius in the armament of the ancestral segment IV of the male antennule, the armament of the female P5 Exp-3, and the segmentation of both rami of the male P5. However, it bore a specific combination of the characteristics, particularly regarding the armament of the swimming legs and mouthparts; therefore, the status of a new genus was justified for the Malaysian specimens, and the name of Sipadantonius gen. nov. was proposed. The description and illustrations of the new taxon were provided hereafter.
Specimens were collected in the Turtle Tomb of Sipadan Island, Sabah, Malaysia, on 3 August 2023 (Fig.
The habitus and appendages were examined and subsequently drawn utilising a drawing tube attached to a compound microscope at 400 × and 1000 × magnifications, respectively. Description was made by adopting the terminology established by
The type material was deposited at the
Universiti Kebangsaan Malaysia Muzium Zoologi (
Superfamily Pseudocyclopoidea Giesbrecht, 1893
Family Pseudocyclopidae Giesbrecht, 1893
Female: Elliptical body. Single plate rostrum, with rounded tip, lacking rostral filaments. Six-segmented prosome. Symmetrical and rounded postero-lateral corners of the fifth pedigerous somite. Four-segmented and symmetrical urosome. Double-somite genital with genital operculum ventromedially. Symmetry furcal rami, with serrated hyaline frill on distal margin, armed with five setae on the tip of the ramus, without furcal setae I and III; spiniform seta II; normal-developed seta V, slightly longer than seta IV. Antennule with 26 segments-; ancestral segments II and fused III; ancestral segments X and partly fused XI; relatively short ancestral segment XXVII; with aesthetasc on ancestral segments I, III–XXI, XXV, and XXVII. Antennae with two-segmented Endp and nine-segmented Exp; segments I–VII of Exp each with one seta. Mandibles with un-modified coxal gnathobase, five-segmented Exp and two-segmented Endp; a distal segment of Endp with ten setae. Maxillulae with nine setae on coxal epipodite and six setae on coxal endite; unarmed basal exite; two-segmented, un-modified Endp. Seven-segmented maxillae lack an outer seta on the outer margin of the coxa. Eight-segmented maxillipeds; length of segments II–VI of Endp is equivalent to syncoxa; transformed proximalmost seta on segment III, with feather-like tip. Three-segmented P1–P5 with both rami; coxa with seta on the distomedial corner; the basis of all swimming legs lacking lateral seta, that of P2–P5 with cuticular window representing the remnant of armament on outer margin; the posterior surface of the basis of P1 with the curved hyaline process. Spine and setal complements of Exp-3 of P2–P5: 2.3.3.3 and 5.5.5.4, respectively; setal complement of Endp-3 of P2–P5: 8.7.7.6. Distolateral corner of P1 Endp-1 and Endp-2 of P1–P4 with bifid indentures; distolateral corner of both Endp-1 and Endp-2 of P5 un-fid. Male: Body shape, rostrum, prosome, mouthparts, furcal rami, and P1–P4 are identical to those of females. Slightly asymmetrical urosome. The left antennule is identical to that of the female; the 22-segmented right antennule, weakly geniculate; fused ancestral segments II–IV, XXI–XXIII, and XXIV–XXV. P5 is asymmetrical, with both three-segmented rami; basis with cuticular pores representing the remnant of armament on outer margin; Endp-1 of left and right legs lacks inner seta; separated Exp-2 and Exp-3; those of the right leg are modified to function as grasping organ.
Sipadantonius roihani sp. nov.
Named after the type locality, Sipadan Island, Sabah, Malaysia, in combination with the -tonius stem from the existing generic name Pinkertonius Bradford-Grieve, Boxshall & Blanco-Bercial, 2014, alluding to the similarity of the genus Pinkertonius. The gender is masculine.
Holotype
• ♀ (adult), 0.95 mm long; 3 August 2023; coll. Azman, B.A.R.; light trap;
• 2 ♂♂ (adult); the data was identical to that of the holotype; preserved in 70% ethanol, subsequently retained in collection of the Sabah Parks Zoological Collection in Semporna, Sabah.
The marine cave “Turtle Tomb”, Sipadan Island, Sabah, Malaysia; the entrance is located at 4°07'04.8"N, 118°37'41.0"E. Samples were collected in the cave at a depth of 22.0 meters below the sea surface, ~ 100 meters from the entrance.
Body (Fig.
Sipadantonius roihani gen. et sp. nov. female: A habitus, dorsal view B habitus, lateral view C urosome, ventral view D urosome, lateral view E genital double-somite, ventral view F furcal rami, dorsal view G furcal rami, lateral view. Arrowheads indicate integumental pores. Scale bars: 200 μm (A, B); 100 μm (C, D); 50 μm (E−G).
Furcal rami (Fig.
Sipadantonius roihani gen. et sp. nov. female: A tip of furcal ramus, dorsal view B tip of furcal ramus, ventral view C antennule D rostrum and segments 1–17 of antennule E segments 18–22 of antennule F segments 23–26 of antennule. Roman numerals on antennule correspond to ancestral segments. Scale bars: 50 μm (A, B); 200 μm (C); 100 μm (D−F).
Rostrum (Figs
Antennules (Figs
Antennae (Fig.
Sipadantonius roihani gen. et sp. nov. female: A antenna B mandible C maxillule, with picture of setae on posterior surface of praecoxal arthrite and enlarged picture of coxal endite D maxilla E maxilliped, with enlarged picture of transformed seta. Arrowhead indicates transformed seta on maxilliped. Scale bars: 50 μm.
Mandibles (Fig.
Maxillulae (Fig.
Maxillae (Fig.
Maxillipeds (Fig.
P1–P4 (Figs
Armament of P1–P5 in Sipadantonius roihani gen. et sp. nov., (Legend: outer-inner element; outer-apical-inner element; Arabic numerals indicate number of setae; Roman numerals indicate number of spines).
Swimming leg | Coxa | Basis | Exopod | Endopod | ||||
---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 1 | 2 | 3 | |||
P1 | 0-1 | 0-1 | I-1 | 1-1 | II-I-4 | 0-1 | 0-2 | 1-2-3 |
P2 | 0-1 | 0-0 | I-1 | I-1 | II-I-5 | 0-1 | 0-2 | 2-2-4 |
P3 | 0-1 | 0-0 | I-1 | I-1 | III-I-5 | 0-1 | 0-2 | 2-2-4 |
P4 | 0-1 | 0-0 | I-1 | I-1 | III-I-5 | 0-1 | 0-2 | 2-2-3 |
P5 (female) | 0-1 | 0-0 | I-1 | I-1 | III-I-4 | 0-1 | 0-1 | 2-2-2 |
Left leg of P5 (male) | 0-0 | 0-0 | I-0 | I-0 | 0-I-I | 0-0 | 0-1 | 2-2-2 |
Right leg of P5 (male) | 0-0 | 0-0 | I-0 | I-0 | I-0-I | 0-0 | 0-1 | 2-2-2 |
Sipadantonius roihani gen. et sp. nov. photographs of lateral surface of basis of swimming legs, female (A−E) and male (F): A posterior hyaline process on basis of P1 (indicated by arrow) B P1 C P3 D P4 E, F P5. Arrowheads indicate cuticular windows on lateral margin of basis. Scale bars: 10 μm.
P1 (Figs
P2 (Fig.
P3 (Figs
P4 (Figs
P5 (Figs
Body (Fig.
Furcal rami (Fig.
Antennules asymmetrical. Left antennule non-geniculate, reaching distal margin of urosomite 2; articulation and setation identical to those of female. Right antennule geniculate, representing 22-segmented (Fig.
Sipadantonius roihani gen. et sp. nov. male: A segments 1–15 of antennule, with picture of segment 12 that aesthetasc is removed B segments 16–22 of antennule C P5 furcal view D Exp-2 and Exp-3 of right leg of P5, lateral view E Endp-1 and Endp-2 of left leg of P5, posterior surface. Arrowheads indicate the important characteristic of the structure and Roman numerals on antennule correspond to ancestral segments. Scale bars: 200 μm (A, B); 50 μm (C−E).
Antenna, mandible, maxillula, maxilla, maxilliped, and P1−P4 as those of female.
P5 (Fig.
Based on three male specimens, including the allotype, the inner seta was absent from the right P4 Exp-1 in the allotype. There was no additional remarkable variation between the females and males.
There was a curved suture on the right side of the ventral surface of the genital somite in one male (Fig.
The specific epithet was conferred in honour of Mr Roihan Han, a Malaysian deep dive record holder (at a depth of 164 m), who also led the Turtle Tomb exploration activity. Consequently, the name is a noun in the genitive singular.
The new taxon belonged to the superfamily Pseudocyclopoidea Giesbrecht, 1893, indicated by the following diagnostic characteristics mentioned in
Epacteriscidae Fosshagen, 1973 and Pseudocyclopidae Giesbrecht, 1893 (
Following the recent morphological examination, the new species demonstrated a close affinity to the family Pseudocyclopidae through the presence of the following shared characteristics:
It was noted that the new species exhibited an affinity to the family Epacteriscidae, characterised by the presence of aesthetasc on the ancestral segment IV of the antennule and the absence of inner process on Exp-2 of the right leg of the male P5. Furthermore, a combination of the presence of aesthetasc on the ancestral segment XIX of antennule in both sexes and the presence of aesthetasc on the ancestral segment XX of the female antennule, as identified in the new species, had been observed exclusively in Caiconectes Fosshagen & Iliffe, 2007. Nevertheless, the new species could not be classified as a member of this family due to its lack of a bilobed rostrum, rostral filament, and raptorial-adaptive features of mouthparts. An example of the last characteristic was the enlargement of the ventral teeth (e.g.,
Consequently, the placement of the new species within the superfamily Pseudocyclopoidea and the family Pseudocyclopidae was deemed justified. It was suggested that the presence of aesthetasc on ancestral segment IV of the female antennule and the absence of inner process on Exp-2 of the right leg of the male P5 constituted merely an occasional occurrence of the characteristic within the representatives of the justified family. Following the synonymisation of the families Boholinidae and Ridgewayiidae with the family Pseudocyclopidae, 14 calanoid genera were included. The genera Boholina, Exumella, Placocalanus, Pseudocyclops and Ridgewayia are polytypic; whereas the remaining genera are monotypic, represented by one species. Among these genera, the monotypic genus Pinkertonius is considered the basal taxon. The phylogenetic study indicated four characteristics that distinguished Pinkertonius from other genera: (1) the separation of ancestral segments II and III of the female antennule, (2) the presence of aesthetasc on the ancestral segment IV of the male antennule, (3) the presence of medial seta 4 on the female P5 Exp-3, and (4) the separation of Exp-2 and Exp-3 of both rami of the male P5. Based on the aforementioned characteristics, the new species represented one of the phylogenetic transitional stages between the genus Pinkertonius and other genera, as the same conditions of characteristics (2), (3), and (4) were present in the new species with separated ancestral segments II and III of the female antennule. Other characteristics shared by the new species and Pinkertonius ambiguus Bradford-Grieve, Boxshall & Branco-Bercial, 2014 included (1) the shape and the armament of Exp-3 and Endp of the right leg of the male P5, (2) the absence of armature element of maxillular basal exite, and (3) the relative length of ancestral segment XXVII of antennule.
Nevertheless, the new species was unable to be classified as a member of the genus Pinkertonius and all genera of the family Pseudocyclopidae based on the combination of the following characteristics:
Consequently, the new generic rank Sipadantonius gen. nov. was established within the family Pseudocyclopidae, intended to accommodate the new calanoid species from the Turtle Tomb of Sipadan Island, Sabah, Malaysia. Furthermore, the female exhibited the most plesiomorphic characteristics of the family Pseudocyclopidae by having aesthetascs on the ancestral segments IV and XX of antennule and six setae on the maxillular coxal endite. The number of setae on the maxillular coxal endite in Calanoida exhibited variability; however, it was noted that there had never been more than five setae (
The order Calanoida had been divided into nine superfamilies by
The existence (= the presence/absence) of aesthetascs on certain segments of the antennule was employed in morphology-based phylogenetic analysis of the superfamily Pseudocyclopoidea (
Five plesiomorphic characteristics of Pinkertonius were noted: (1) the female antennule segmentation between the ancestral segments II and III; (2) the male antennule with aesthetasc on the ancestral segment IV; (3) Endp-1 of the male right P5 with medial seta; (4) Exp-3 of the female P5 with medial seta 4; (5) the P5 with three-segmented Endp in both sexes. The new species exhibited a close phylogenetic relatedness with Pinkertonius, characterised by the presence of the combination of characteristics (2), (4), and (5), which served to distinguish the new species and Pinkertonius from all other Pseudocyclopidae. The characteristic (2) demonstrated a high phylogenetic signal in morphology-based phylogenetic analyses of the superfamily (
Certain characteristics link Pinkertonius to the family Pseudocyclopidae, including: (1) the existence of an aesthetasc on a certain segment of the female antennule; (2) segmentation and armament of the Endp of the mandible; (3) the armament of epipodite of the maxillule; (4) ornamentation of the basis of the P1, and (5) segmentation and ornamentation of the male P5 (
It was noted that the new species bore six elements on the maxillular coxal endite and furcal rami, lacking furcal seta I and seta III. The presence of six elements on the maxillular coxal endite constituted the most plesiomorphic characteristic among the representatives of Calanoida, in which the maximum number of setae on the endite was five (
A distinctive characteristic of the new species was the reduction of furcal setae I and III. In Pseudocyclopoidea, the complete reduction of furcal setae was reported for the furcal setae I and II, with the latter being specific to Miheptneria (
The superfamily Pseudocyclopoidea had frequently been reported from cave habitats, and it appeared likely that no relevant adaptive feature was specific to copepods inhabiting this type of environment. It was possible that such a morphological adaptation/modification was related to the zones of the water column in which the copepods lived (
The two assumptions regarding the pelagic adaptation and the secondary colonisation of the pelagic realm of the new species were likely interconnected with the geological history of the sampling area and the ecological characteristics of the cave. From a geological perspective, the Turtle Tomb is located beneath Sipadan Island, which is the top of a volcanic cone located within the complex zone formed by the convergence of three tectonic plates, namely the Philippines Sea, Indian and Pacific Plates (
The second possibility was hypothesised based on the ecological characteristics of the cave. The new species was collected in the Turtle Tomb, recognised as one of the largest marine caves of Southeast Asia, located at Sipadan Island, from ~ 20 meters below the sea surface within the cave. The cave has a large entrance measuring ~ 20 meters wide and a horizontal gallery with depths varying from ~ 18–21 meters. Crystal-clear water with settled sediment at the sampling site indicates a slow movement of water currents. The broad space of the cave, coupled with the slow movement of water currents, likely facilitates an adaptation towards the planktonic lifestyle, enabling organisms to navigate through the free water masses within the cave. Exumellina is another example of a copepod exhibiting a planktonic lifestyle, having been collected in the pelagic zone of a marine cave (i.e., Norman’s Pond Cave). Exumellina is characterised by a slender body and relatively small and equal outer spines of Exp of P1–P4 (
Gratitude was extended to Roihan Han, Boy Jay Alexius Petrus, Ag Ahmad Zaki Abu Bakar, Rex Andoh, Jackson Tang, Maxime Cheminade, Por Parasu Komaradat and Fitria Mock for their assistance with the Turtle Tomb cave studies. Gratitude was expressed towards Dr. Nasrulhakim Maidin, Mr. Jufri Hj. Nasri, and Mr Johny Buis from the Sipadan Island Park (Sabah Parks) and Sabah Biodiversity Council (SaBC) for granting permission to conduct these investigations. The authors thank the reviewers for their constructive comments and helpful suggestions, which significantly enhanced the manuscript.
The authors have declared that no competing interests exist.
No ethical statement was reported.
The biological collections from Turtle Tomb received support from the Nagao Natural Environment Foundation-Japan for A.-R. Azman.
A.R.A. conceived the data collection and data validation; C.B., K.W. and A.R.A. collated the information. All authors analysed the results. C.B. wrote the first draft of the manuscript, and all authors contributed to the writing of the manuscript.
Chaichat Boonyanusith https://orcid.org/0000-0003-1487-2160
Koraon Wongkamhaeng https://orcid.org/0000-0001-7671-8869
Abdul-Rahim Azman https://orcid.org/0000-0002-8964-6638
All of the data that support the findings of this study are available in the main text.