Review Article |
Corresponding author: Derek S. Sikes ( dssikes@alaska.edu ) Academic editor: Jan Klimaszewski
© 2024 Derek S. Sikes, Margaret K. Thayer, Alfred F. Newton.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Sikes DS, Thayer MK, Newton AF (2024) Large carrion and burying beetles evolved from Staphylinidae (Coleoptera, Staphylinidae, Silphinae): a review of the evidence. ZooKeys 1200: 159-182. https://doi.org/10.3897/zookeys.1200.122835
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Large carrion beetles (Silphidae) are the focus of ongoing behavioral ecology, forensic, ecological, conservation, evolutionary, systematic, and other research, and were recently reclassified as a subfamily of Staphylinidae. Twenty-three analyses in 21 publications spanning the years 1927–2023 that are relevant to the question of the evolutionary origin and taxonomic classification of Silphidae are reviewed. Most of these analyses (20) found Silphidae nested inside Staphylinidae (an average of 4.38 branches deep), two found Silphidae in an ambiguous position, and one found Silphidae outside Staphylinidae, as sister to Hydrophilidae. There is strong evidence supporting the hypothesis that large carrion beetles evolved from within Staphylinidae and good justification for their classification as the subfamily Silphinae of the megadiverse, and apparently now monophyletic, Staphylinidae. Considerable uncertainty remains regarding the interrelationships and monophyly of many staphylinid subfamilies. Nonetheless, the subfamily Tachyporinae was found to be the sister of Silphinae in more analyses (7) than any other subfamily.
Monophyly, Nicrophorini, Nicrophorus, paraphyly, rove beetles, Silphidae, Silphini
“Silphidae may instead be a sister group to Staphylinidae, or an isolated basal lineage within it, and its exact relationship to Staphylinidae sensu latissimo is in our opinion the most difficult remaining issue concerning the monophyly of Staphylinidae.” –
Paraphyly is a common classification error often resulting from a lineage evolving into a new ecological space that differs significantly from its closest relatives. Classic examples include tetrapods from fish (
Large carrion beetles are a relatively well-known small monophyletic group of approximately 189 extant species worldwide. They have traditionally been treated as a family (Silphidae) with two subfamilies: Nicrophorinae and Silphinae (
Although there has long been consensus that Silphidae are monophyletic (
We limit our review to works that were conducted in such a way that Silphidae could root inside or outside the Staphylinidae. Thus, we excluded works that used Silphidae as an outgroup of Staphylinidae (
For each study we provide information to help judge the robustness of the analysis and its findings relevant to the placement of Silphinae. We include the number and type of datasets used. Number of datasets was approximately equivalent to number of genes analyzed (we counted mitogenome analysis as 16 datasets because there are 15 non-tRNA genes in beetle mitochondrial genomes and we count all the tRNAs as a single gene because of their small size). Generally, phylogenetic accuracy increases with the number of genes and number of taxa used in an analysis. We indicate what type of analysis was performed (viz. non-algorithmic, parsimony, Maximum Likelihood, Bayesian). Using subfamilies as terminals, we provide a simplified figure, built using MESQUITE v. 3.6 (
Simplified Staphylinidae phylogenies from A
Analyses relevant to the evolutionary origin of the Silphinae. In/out: whether Silphinae joined inside Staphylinidae. Depth: number of branches that would need to collapse for Silphinae to fall into a polytomy with basal Staphylinidae. Depth Strength: number of such branches well supported. Methods: NA, non-algorithmic; MP, maximum parsimony; ML, Maximum Likelihood; BI, Bayesian Inference. % St-oidea: Percentage of the six families of Staphylinoidea represented, not counting Silphidae and Staphylinidae.
Analysis | Year | In/out | Datasets/ genes | Data description | Method(s) | Depth | Depth Strength | OTUs | Staph OTUs | % St-oidea | Sister to Silphinae | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Hatch | 1927 | in | 1 | morphology | NA | +9 | n/a | 31 | 19 | 50 | 5 subfam. incl. Tachyporinae |
2 | Lawrence and Newton | 1982 | in | 1 | morphology | NA | n/a | n/a | n/a | n/a | 100 | n/a |
3 | Beutel and Molenda | 1997 | ? | 1 | morphology | MP | 1 | n/a | 29 | 22 | 50 | All remaining Staphylinidae |
4 | Hansen | 1997 | in | 1 | morphology | MP | +5 | n/a | 37 | 22 | 83 | Apateticinae |
5 | Ballard et al. | 1998 | in | 3 | rDNA (12S), mtDNA (Cyt b), morphology | MP | +4 | +1 | 25 | 23 | 33 | In polytomy with Tachyporinae |
6 | Korte et al. | 2004 | out | 2 | rDNA (18S, 28S) | MP, BI | n/a | n/a | 35 | 6 | 33 | n/a |
7 | Caterino et al. | 2005 | in | 2 | rDNA (18S) and morphology | MP, ML, BI | +3 | +1 | 105 | 35 | 67 | Phloeocharinae |
8 | Hunt et al. | 2007 | in | 3 | rDNA (18S), mt-rDNA (16S) and COI | MP, BI | +6 | 0 | 340 | 20 | 67 | Tachyporinae |
9 | Grebennikov and Newton | 2009 | in | 1 | rDNA (18S) | MP, NJ, BI | +5 | +2 | 93 | 75 | 67 | Tachyporinae |
10 | Lawrence et al. | 2011 | in | 1 | morphology | MP | +4 | 0 | 359 | 11 | 100 | Tachyporinae+Staphylininae |
11 | Grebennikov and Newton | 2012 | ? | 1 | morphology | MP | 1 | 0 | 36 | 34 | 33 | All remaining Staphylinidae |
12 | Bocak et al. | 2014 | in | 4 | rDNA (18S, 28S), mtDNA (rrnL, COI) | ML | +8 | 0? | 8,441 | 349 | 67 | Tachyporinae |
13 | McKenna et al. | 2015 | in | 2 | rDNA (28S), CAD | BI, ML | +3 | +3 | 282 | 51 | 83 | Tachyporinae |
14 | Timmermans et al. | 2016 | in | 16 | mitogenomes | ML, BI | +4 | +3 | 245 | 11 | 33 | Habrocerinae and Aleocharinae (in part) |
15 | Zhang et al. | 2018 | in | 95 | protDNA (Amino Acids) | ML, BI | +5 | +2 | 373 | 16 | 83 | Apateticinae, Scaphidiinae, and Osoriinae |
16 | Kypke (PhD diss: fig4) | 2018 | in | 993 | genomics | ML | +3 | +3 | 33 | 25 | 50 | Oxytelinae |
17 | Kypke (PhD diss: fig. 5) | 2018 | in | 1,033 | genomics | ML | +2 | 0 | 57 | 41 | 83 | many subfamilies |
18 | McKenna et al. | 2019 | in | 4,818 | genomics | ML | +2 | +2 | 146 | 4 | 50 | Staphylininae |
19 | McKenna et al. | 2019 | in | 89 | DNA | ML | +4 | +2 | 521 | 20 | 83 | Apateticinae, Scaphidiinae, and Osoriinae |
20 | Lü et al. | 2019 | in | 6 | nDNA (CAD, Wg, 28S, 18S), mtDNA (Cyt b, 16S) | ML | +6 | 0 | 664 | 614 | 83 | Tachyporinae |
21 | Cai and Li | 2021 | in | 13 | mtDNA (protein coding genes only) | ML | +4 | 0 | 40 | 11 | 50 | Staphylininae |
22 | Song et al. | 2021 | in | 16 | mitogenomes | BI | +6 | +3 | 107 | 95 | 17 | Tachyporinae (in part) |
23 | Zhao et al. | 2022 | in | 16 | mitogenomes | ML | +7 | +5 | 93 | 85 | 50 | Tachyporinae (in part) |
Lawrence and Newton (1982), using cladistic reasoning (but non-algorithmic) and phenotypic characters (morphology and behavior) of adults and larvae, delimited groups of staphylinid subfamilies and commented on the family Silphidae. Their “staphylinine group” contains many mostly predatory species which share the behavior of extraoral digestion, among other characters. They added that the families Silphidae and Scydmaenidae share traits with this subfamily group and these families may have evolved from Staphylinidae. They did not include a phylogenetic analysis in their work, but their comprehensive review of staphylinid higher taxon relationships warrants review here. This work is historically important in being the first of the modern phylogenetic era (post-Hennig) to suggest that Silphidae may belong inside Staphylinidae. We categorized their findings as support for
Note that the larva identified as “Euaesthetus sp.” in
Simplified Staphylinidae phylogenies from A
Simplified Staphylinidae phylogenies from A
Considering all 23 analyses, it is apparent that the data type, number of genes, and analysis method do not matter: 97% failed to reject
With analyses ranging from a single gene to 4,818 genes and having a range of staphylinid OTUs from four to 614 with an average of 71.5, including a mega-analysis with 8,441 beetle OTUs, and most analyses including three or more of the six additional staphylinoid families, the evidence is strong for
We do not think so. Systematic errors that are known to reduce phylogenetic accuracy, such as long branch attraction and other forms of model misspecification, do not seem to explain these results – particularly since some were based on morphological data and many used inference methods (e.g., Maximum Likelihood) known not to be predisposed to such biases. Could we have missed a significant number of publications that found contrary results? We do not think so. It is possible we have missed some analyses but doubt we have missed any large-scale, well-done, and relevant phylogenetic works that fit our criteria for inclusion and rejected
The reviewed analyses found a variety of different possible sister taxa of Silphinae, but Tachyporinae was found to be the sister group more often than any other subfamily (7 times in 19 analyses that included Tachyporinae). Three analyses did not include any Tachyporinae (
Considerable uncertainty remains in our understanding of the intrafamilial relationships of the Staphylinidae. Although costly and difficult to accomplish, it would be ideal to have an analysis with hundreds of Staphylinidae representing all the subfamilies and most tribes, many outgroups including all staphylinoid families, hundreds of genes, as well as a morphological dataset, and no missing data. Given the apparent conflicting phylogenetic signal among many of the analyses we review, we suspect that even with such an ideal study design, the analysis will encounter many difficult challenges.
We conclude that with the addition of Silphinae as the 34th subfamily of Staphylinidae, this megadiverse family is finally monophyletic.
Fossils were not formally included in any of the phylogenetic analyses discussed above, even those based at least in part on morphology. This is partly because of the lack, until recently, of fossils that are adequately preserved and clearly attributable to Silphinae until the mid–late Tertiary (ca 35 Mya or younger), when fossils resembling or placed in modern genera of Silphinae appear (e.g.,
Based on this current state of knowledge of silphine fossils, we can conclude that the known age of silphines is comparable to that of the earliest known fossils reliably attributable to any other group of Staphylinidae, i.e., mid-Jurassic (e.g.,
From the multiple lines of phylogenetic evidence presented above, supported by the ever-expanding fossil record of Staphylinidae (29, possibly 30, of the 34 subfamilies now known), it seems well justified to treat Silphinae as a subfamily of a strongly supported monophyletic Staphylinidae.
We thank Jan Klimaszewski and Jong-Seok Park for their editorial and peer review, respectively, which improved the manuscript.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No funding was reported.
Conceptualization: DSS. Investigation: AFN, DSS, MKT. Methodology: DSS, MKT. Validation: DSS, MKT, AFN. Visualization: DSS. Writing - original draft: DSS, AFN. Writing - review and editing: DSS, MKT, AFN.
Derek S. Sikes https://orcid.org/0000-0002-4336-2365
Margaret K. Thayer https://orcid.org/0000-0003-0061-9981
Alfred F. Newton https://orcid.org/0000-0001-9885-6306
All of the data that support the findings of this study are available in the main text and the respective data files of most of the analysis reviewed.