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Research Article
New records of Provanna (Gastropoda, Provannidae) from the Costa Rica Margin and an identification key for the genus
expand article infoMelissa J. Betters, Erik E. Cordes
‡ Temple University, Philadelphia, United States of America
Open Access

Abstract

Consistent species identification is foundational to biological research and requires coordination among a diversity of researchers and institutions. However, such consistency may be hindered for rare organisms where specimens, identification resources, and taxonomic experts are few. This is often the case for deep-sea taxonomic groups. For example, the deep-sea gastropod genus Provanna Dall, 1918 is common at chemosynthetic sites throughout the world’s oceans, yet no formal guide to these species has yet been produced. Recent exploration has recovered new specimens of Provanna from hydrocarbon seeps off the Pacific Costa Rica Margin. The current work assesses the species identity of these specimens using shell morphology, radular morphology, and genetic barcoding (mitochondrial CO1 and nuclear H3). Records of occurrence for P. laevis Warén & Ponder, 1991, P. ios Warén & Bouchet, 1986, and P. pacifica Warén & Bouchet, 1986 are herein presented from the Costa Rica Margin. A critical taxonomic review of the 29 extant species within this genus was conducted and their genetic, morphological, and biogeographical distinction assessed. In this review, genetic and morphological support was found for nearly all current species delineations except for P. glabra Okutani et al., 1992, syn. nov. and P. laevis, syn. nov., which are herein synonymized to P. laevis, and for P. ios, syn. nov. and P. goniata Warén & Bouchet, 1986, syn. nov., which are synonymized to P. ios. Finally, the first species identification key for the extant species in this genus is presented. This work clarifies the taxonomy and systematics of this deep-sea gastropod genus and contributes a novel polytomous key for use in future research.

Key words

Gastropoda, identification, species delimitation, systematics, taxonomy

Introduction

Consistent species identification is foundational to biological research. Studies of populations, communities, and ecosystems all rely on authors from a wide range of backgrounds and locations coordinating species definitions. This is particularly salient for the global endeavor of deep-sea research, where many species are recent discoveries. As many regions of the ocean remain unexplored, taxonomic characterization of marine invertebrates are hindered by a lack of collections, occurrence records, identification resources, and taxonomic experts (Sigwart et al. 2019; Engel et al. 2021).

Throughout the world’s oceans, ecosystems reliant on chemosynthetic activity, such as hydrothermal vents and hydrocarbon seeps, are hotspots for productivity on the ocean floor, hosting an anomalously high biomass community consisting of numerous endemic species (Sibuet and Olu 1998). These ecosystems often host abundant gastropod populations which act as the primary grazers at these sites, feeding on the biofilms and bacterial mats that coat the hard surfaces of these environments (Sasaki et al. 2010). To identify such gastropods to the species level, researchers commonly rely on data sources such as shell morphology, genetic barcoding (e.g., mitochondrial cytochrome oxidase I gene (CO1)), and radular imaging (e.g., Nekhaev 2023). However, not all known species have been genetically barcoded, precluding the utility of these data in every case. With few taxonomic resources available for these ecosystems, researchers must rely on formal descriptions to identify species which assume a thorough, prior knowledge of taxon-specific language. Furthermore, comparisons across dozens of species may be necessary to come to a confident identification which can be arduous and time-consuming, particularly when species identification is just one part of a broader study. A solution to this problem is a key, which synthesizes a set of informative criteria and guides researchers to a workable species hypothesis. Keys are typically more easily implemented by researchers across expertise levels than formal descriptions, thus presenting an effective method with which to streamline and standardize species identifications.

The current work centers on aa genus of Abyssochrysoid snails Provanna (Dall, 1918), presenting new records, a taxonomic review, and a new identification key for its species. Provanna occur worldwide and are endemic to chemosynthetic environments (Johnson et al. 2010; Amano and Little 2012; Linse et al. 2019). In total, 29 extant species of Provanna are currently recognized on the World Register of Marine Species (WoRMs), six of which have recently been designated as Endangered or Critically Endangered on the IUCN Red List (Molloy et al. 2020a, b, c; Thomas and Sigwart 2020; Molloy and Thomas 2021a, b; IUCN 2022). Despite their cosmopolitan distribution and their threatened status, however, identification resources for this group are lacking, increasing the likelihood that some of the recognized species are synonymous and that other species are cryptic and have gone unrecognized within this genus. An understanding of the conservation status of species must begin with a confident identification of the species.

Species of Provanna, like other deep-sea gastropods, may be distinguished by their shell and radular morphology, making a morphology-based identification key useful. All Provanna share certain characteristics that distinguish the genus. Specimens have small, turbinate, dextral shells, a thin periostracum, no umbilicus, and usually no more than 2–3 shell whorls intact, regardless of size. They are never wider than they are tall and their apertures have a distinct shape; They are rarely circular or ovate. Rather, the columellar lip typically curves inwards near the bottom of the shell, such that it forms a near-right angle with the lower lip (see Fig. 2A for an example). They are also small, with one of the largest specimens recorded just 2 cm in length (Chen et al. 2018). They may be distinguished from their sister genus Desbruyeresia in that Desbruyeresia typically have tall, intact spires of > 3–4 whorls and more slender, turriform shells (Warén and Bouchet 1993). They also have distinct radular characteristics, with Desbruyeresia having multiple denticles on the cusps of their central teeth while Provanna have none (Warén and Bouchet 1993). Protoconchs (larval shells) are also useful in distinguishing these genera; However, protoconchs are almost unanimously missing in Provanna specimens (Warén and Ponder 1991; Warén and Bouchet 1993). Finally, genetic characterization of this group is still ongoing, with gene sequences currently unavailable for P. abyssalis (Okutani & Fujikura, 2002), P. admetoides (Warén & Ponder, 1991), P. chevalieri (Warén & Bouchet, 2009), P. goniata (Warén & Bouchet, 1986), P. muricata (Warén & Bouchet, 1986), P. nassariaeformis (Okutani, 1990), nor P. reticulata (Warén & Bouchet, 2009). This lack of sequence data makes an identification key based on morphology particularly relevant, especially one that is created using an integrative taxonomy approach that includes genetic data.

In the present study, we present formal records of Provanna from hydrocarbon seeps at the Costa Rica Margin that were sampled from 700 to 2000 meters depth. These sites were sampled during three cruises from 2017–2019, representing one of the most intensive sampling efforts in this region to date. The hydrocarbon seepage in this region is driven by the subduction of the Cocos Plate beneath the Caribbean plate (Suess 2014) and fuels chemosynthetic primary productivity at these sites (Cavanaugh et al. 1981; Suess 2014). This investigation aims to identify these Costa Rican hydrocarbon seep Provanna down to the species level using both morphological and genetic data. While the ecology and depth partitioning of these Provanna specimens have been recently investigated (Betters et al. 2023), the present study details the rigorous taxonomic identification of these specimens. We incorporate these data into a holistic review of the genus with the aim of assessing the morphological and genetic distinction among its extant species. Finally, we synthesize these results into the first polytomous species identification key for all currently known, extant Provanna species.

Materials and methods

Specimen collection

Specimens of Provanna were obtained from one of six sites at the Pacific Costa Rica Margin (CRM) during research expeditions conducted from 2017 to 2019 (Fig. 1, Table 1). Provanna were sampled by the human-operated vehicle (HOV) ‘Alvin’ and the remotely operated vehicle (ROV) ‘Subastian’ using various sampling tools attached to the HOV or ROV such as the manipulator arm or suction hose. The locations of sampling events were recorded for all specimens collected. Upon arrival to the surface, specimens were kept cold before being promptly preserved in > 95% ethanol. Specimens were then stored long term in ethanol at room temperature (20–25 °C).

Table 1.

Summary of hydrocarbon seep sites sampled at the Costa Rica Margin and their associated species yield. Abbreviations in cruise identities are defined as follows: FK = R/V ‘Falkor’ cruise number, AT = R/V ‘Atlantis’ cruise number. Abbreviations: SD = ROV ‘Subastian’ dive number, AD = HOV ‘Alvin’ dive number. *Previously identified as P. goniata.

Seep site Number of specimens Species composition GPS coordinates Depth (m) Cruise ID Dive ID
Jaco Summit 6 P. laevis (100%) 9.174°N, 84.800°W 740–760 FK19-0106 AT37-10 AT37-13 SD213 AD4874 AD4912 AD4913 AD4914
Jaco Scar 180 P. ios (100%)* 9.115°N, 84.836°W 1800–2000 AT42-03 AD4971 AD4973 AD4977 AD4989
FK19-0106 SD214
Quepos Seep 6 P. pacifica (100%) 8.922°N, 84.305°W 1000–1100 AT37-13 AD4924
The Thumb 815 P. laevis (100%) 9.049°N, 84.354°W 1071–1075 FK19-0106 SD217
Mound 12 803 P. laevis (100%) 8.930°N, 84.313°W 900–1050 AT37-13 AD4907 AD4910 AD4917
AT42-03 AD4974 AD4978 AD4984 AD4985 AD4987
Mound 11 5 P. lomana (40%), P. pacifica (60%) 9.031°N, 84.619°W 1300–1500 AT42-03 AD4988
Figure 1. 

Map of the Costa Rica Margin A overview of the Costa Rica continental shelf with hydrocarbon seep sites labelled B close-up view of the sites Mound 12 and Mound 11, which appear overlapping in the larger map. Bottom bathymetry is demarcated by black lines every 250 m.

Morphological analysis

All morphological characters and measurements are defined in Fig. 2 and Table 2. To begin identifying our specimens and constructing the key, original taxonomic descriptions of all extant Provanna species were obtained. The following shell characters were annotated for each species: The number of axial and spiral ribs on the body whorl, the relative strength of the body whorl sculptures, sculptural elements formed, how far down the body whorl the axial ribs extend, the presence of basal ribs, the average roundness (width / length) of the original holotype and paratype shells, the depth of the shell suture, and the descriptive shape of the aperture (Table 3). The following radular characters were also annotated: The relative width of the central teeth, the descriptive shape of the central teeth cusps, the roundedness of the central teeth’s anterior ridges, the number of denticles on the first lateral teeth, which denticle on the first lateral teeth is the most longest (“major” denticle), the descriptive shape of the first lateral major denticles, the angle of the first lateral posterior buttress, and the number of marginal tooth denticles (Table 3).

Table 2.

Definitions for selected terminology used to describe morphological characters.

Aperture The opening of the shell from which the gastropod body would protrude
Axis of coiling The imaginary line that runs from the top of a shell’s spire to the tip of its base around which the shell is coiled
Axial sculpture The sculpturing of the shell running parallel to the axis of coiling
Growth lines Fine transverse lines marking shell growth. They are distinguished from axial sculpturing in that they are not raised or grooved.
Sculpture Three-dimensional, linear ornamentation on the outer surface of the shell. These rise away from the shell surface
Sculptural element Knob-, bead-, or spike-like protrusions that occur at intersections of the axial and spiral sculptures and that are raised higher than either sculpture. Note: If a Provanna shell has structural elements, it will typically have both an axial and spiral sculpture.
Body whorl margin The length between the posterior end of the aperture and the previous suture line
Spiral sculpture The sculpturing of the shell running perpendicular to the axis of coiling
Suture Where the whorls of the shell are fused, including where the aperture is fused with the body whorl
Whorl One complete revolution of shell growth
Table 3.

Summary of morphological characteristics for the type specimens of each Provanna species.

Species Axial ribs on body whorl Spiral ribs on body whorl Relative strength of ribs on body whorl Sculptural elements Axial body sculpture extends to
P. abyssalis Okutani & Fujikura, 2002 0 0 NA Absent NA
P. admetoides Warén & Ponder, 1991 35–45 2–3 Variable Minor spines/Absent Posterior end of aperture
P. annae Nekhaev, 2023 0 0 NA Absent NA
P. beebi Linse et al., 2019 >20 0–6 Spiral > Axial Beaded/ Absent Anterior end of shell
P. buccinoides Warén & Bouchet, 1993 10–20 3–4 Spiral < Axial Nodules Posterior end of aperture
P. chevalieri Warén & Bouchet, 2009 10–20 0–3 Spiral < Axial Absent Mid-body whorl
P. cingulata Chen et al., 2018 0 4–6 Spiral > Axial Absent NA
P. clathrata Sasaki et al., 2016 10–20 3–5 Variable Nodules/ Minor Spines Posterior end of aperture
P. cooki Linse et al., 2019 0 0–5 Spiral > Axial Absent NA
P. exquisita Chen & Watanabe, 2022 14–18 2–3 Spiral > Axial Major Spines/Keel Posterior end of aperture
P. fenestrata Chen et al., 2019 16–20 1–2 Variable Nodules/ Absent Posterior end of aperture
P. glabra Okutani et al., 1992 0 0 NA Absent NA
P. goniata Warén & Bouchet, 1986 15–20 2–3 Spiral > Axial Major Spines Posterior end of aperture
P. ios Warén & Bouchet, 1986 15 2 Spiral > Axial Minor Spines Posterior end of aperture
P. kuroshimensis Sasaki et al., 2016 0 0 NA Absent NA
P. laevis Warén & Ponder, 1991 0 0 NA Absent NA
P. lomana Warén & Bouchet, 1986 10–20 0 Spiral < Axial Absent Posterior end of aperture
P. lucida Sasaki et al., 2016 0 0–3 Spiral > Axial Absent NA
P. macleani Warén & Bouchet, 1989 10–20 4–5 Spiral > Axial Absent Posterior end of aperture
P. muricata Warén & Bouchet, 1986 14–16 1–2 Spiral < Axial Nodules/ Minor Spines Posterior end of aperture
P. nassariaeformis Okutani, 1990 20–25 3–5 Spiral = Axial Beaded Anterior end of shell
P. pacifica Warén & Bouchet, 1986 12–16 2–3 Spiral > Axial Nodules/ Minor Spines Posterior end of aperture
P. reticulata Warén & Bouchet, 2009 0–15 2–4 Spiral = Axial Minor Spines Posterior end of aperture
P. sculpta Warén & Ponder, 1991 15 3 Spiral < Axial Beaded Posterior end of aperture
P. segonzaci Warén & Ponder, 1991 10–20 2–3 Spiral < Axial Nodules/ Minor Spines Posterior end of aperture
P. shinkaiae Okutani & Fujikura, 2002 10–20 2–3 Spiral > Axial Major Spines Posterior end of aperture
P. stephanos Chen et al., 2019 10–20 2–3 Spiral > Axial Major Spines/Keel Posterior end of aperture
P. subglabra Sasaki et al., 2016 0 0 NA Absent NA
P. variabilis Warén & Bouchet, 1986 0–20 1–3 Spiral > Axial Nodules/ Absent Posterior end of aperture
Species Basal spiral ribs Width / Length Depth of suture Aperture shape description Central tooth width Central tooth cusp
P. abyssalis Okutani & Fujikura, 2002 Absent 0.5 Constricted Globose Typical Long, triangular
P. admetoides Warén & Ponder, 1991 Present 0.61 Moderate Fusiform Very narrow Very truncated
P. annae Nekhaev, 2023 Absent 0.6 Constricted Globose Typical Long, triangular
Species Basal spiral ribs Width / Length Depth of suture Aperture shape description Central tooth width Central tooth cusp
P. beebi Linse et al., 2019 Present 0.59 Moderate Fusiform/ Semicircle Broad Blunt, truncated
P. buccinoides Warén & Bouchet, 1993 Present 0.63 Moderate Globose Broad Blunt, truncated
P. chevalieri Warén & Bouchet, 2009 Present 0.55 Constricted Globose Broad Very short, triangular
P. cingulata Chen et al., 2018 Absent 0.61 Constricted Globose Broad Short, triangular
P. clathrata Sasaki et al., 2016 Present 0.61 Constricted Fusiform Typical Long, triangular
P. cooki Linse et al., 2019 Absent 0.57 Constricted Fusiform Broad Triangular
P. exquisita Chen & Watanabe, 2022 Present 0.55 Constricted Semicircular Typical Triangular
P. fenestrata Chen et al., 2019 Present 0.59 Moderate Variable Typical Triangular
P. glabra Okutani et al., 1992 Absent 0.6 Flat Globose Typical Triangular, blunt
P. goniata Warén & Bouchet, 1986 Present 0.59 Moderate Globose/ Fusiform Typical Long, triangular
P. ios Warén & Bouchet, 1986 Variable 0.54 Constricted Fusiform/ Semicircle NA Long, triangular
P. kuroshimensis Sasaki et al., 2016 Absent 0.58 Flat Fusiform Typical Long, triangular
P. laevis Warén & Ponder, 1991 Absent 0.56 Flat Variable Typical Short, triangular
P. lomana Warén & Bouchet, 1986 Present 0.55 Moderate Globose Typical Long, triangular
P. lucida Sasaki et al., 2016 Absent 0.59 Constricted Globose Typical Short, triangular
P. macleani Warén & Bouchet, 1989 Present 0.61 Moderate Fusiform Very narrow Very truncated
P. muricata Warén & Bouchet, 1986 Present 0.56 Constricted Globose Typical Triangular
P. nassariaeformis Okutani, 1990 Present 0.7 Flat Fusiform Broad Triangular, blunt, truncated
P. pacifica Warén & Bouchet, 1986 Present 0.61 Moderate Fusiform Very narrow Very truncated
P. reticulata Warén & Bouchet, 2009 Present 0.57 Moderate Fusiform Broad Blunt, truncated
P. sculpta Warén & Ponder, 1991 Present 0.55 Moderate Fusiform Typical Long, triangular
P. segonzaci Warén & Ponder, 1991 Present 0.59 Constricted Fusiform Typical Triangular
P. shinkaiae Okutani & Fujikura, 2002 Present 0.51 Moderate Semicircle Typical Long, triangular
P. stephanos Chen et al., 2019 Present 0.61 Flat Globose Typical Short, triangular
P. subglabra Sasaki et al., 2016 Absent 0.61 Flat Fusiform Typical Long, triangular
P. variabilis Warén & Bouchet, 1986 Variable 0.55 Moderate Globose Typical Long, triangular
Species Central tooth anterior ridge First lateral tooth cusps First lateral major cusp First lateral major cusp shape First lateral buttress angle Marginal tooth cusps
P. abyssalis Okutani & Fujikura, 2002 Concave 6–7 2nd Triangular, fused with first Right 9–10
P. admetoides Warén & Ponder, 1991 Rounded 3–4 2nd Spatulate Obtuse Alternating 7 or 14+
P. annae Nekhaev, 2023 Concave 3–4 2nd Long, lobate Right 7–9
P. beebi Linse et al., 2019 Flat 4–5 2nd Truncated, lobate Absent 13–17
P. buccinoides Warén & Bouchet, 1993 Rounded/Flat 7 Fourth Very truncated, lobate Absent ~30
P. chevalieri Warén & Bouchet, 2009 Variable 4–5 2nd Very truncated, lobate Sloping/ Absent 13–18
P. cingulata Chen et al., 2018 Round/Flat 4–5 3rd or 4th Rhomboid Absent 15–18
P. clathrata Sasaki et al., 2016 Concave 4–5 2nd Long, triangular Right/ Acute 9–10
P. cooki Linse et al., 2019 Concave 5–6 2nd Long, lobate Obtuse 11–14
Species Central tooth anterior ridge First lateral tooth cusps First lateral major cusp First lateral major cusp shape First lateral buttress angle Marginal tooth cusps
P. exquisita Chen & Watanabe, 2022 Concave 4–5 2nd Truncated, lobate Right/ Obtuse 20–24
P. fenestrata Chen et al., 2019 Concave 4–5 2nd Long, triangular Right 9–10
P. glabra Okutani et al., 1992 Concave 4–5 2nd Long, lobate Right/ Acute 8–12
P. goniata Warén & Bouchet, 1986 Concave 5–6 2nd Long, triangular Right/ Acute 15–25
P. ios Warén & Bouchet, 1986 Concave 4–5 2nd Long, triangular Right/ Acute 15–25
P. kuroshimensis Sasaki et al., 2016 Concave 4–5 2nd Long, lobate Right 10–13
P. laevis Warén & Ponder, 1991 Concave 4–5 2nd Truncated, lobate Acute 15–20
P. lomana Warén & Bouchet, 1986 Concave 4–5 2nd Long, triangular Acute Alternating 7 or 14+
P. lucida Sasaki et al., 2016 Concave 4–5 2nd Long, triangular Right/ Acute 13–15
P. macleani Warén & Bouchet, 1989 Rounded 3–4 2nd Spatulate Sloping/ Absent 15–20
P. muricata Warén & Bouchet, 1986 Concave 4–5 2nd Lobate Sloping/ Obtuse 15–20
P. nassariaeformis Okutani, 1990 Concave/Flat 4–5 2nd Truncated, lobate Absent 15–20
P. pacifica Warén & Bouchet, 1986 Rounded 3 2nd Lobate/Spatulate Sloping/ Obtuse 5–7
P. reticulata Warén & Bouchet, 2009 Concave 2–3 2nd Truncated, lobate Absent 15–20
P. sculpta Warén & Ponder, 1991 Concave 3–5 2nd Long, triangular Acute 15–20
P. segonzaci Warén & Ponder, 1991 Concave 5–7 2nd Multilobate Right/ Obtuse 15–20
P. shinkaiae Okutani & Fujikura, 2002 Concave 2–5 2nd Long, lobate Acute 10–14
P. stephanos Chen et al., 2019 Concave 4–5 2nd or 3rd Long, triangular, blunt Obtuse 12–14
P. subglabra Sasaki et al., 2016 Concave 4–5 2nd Long, triangular Right/ Obtuse 15–20
P. variabilis Warén & Bouchet, 1986 Concave 4–5 2nd Long, triangular Acute Alternating 7 or 14+
Figure 2. 

Visual definitions of morphological characters and measurements used in the study A shell morphological characters B informative measurements assessed for our own specimens C radular terminology and morphological characters. Abbreviations: SW: Shell Width, SL: Truncated Shell Length, GL: Maximum Granule Length, AL: Aperture Length, AW: Aperture Width.

To begin identifying the specimens from the CRM, they were first sorted into distinct morphotypes. Representatives from the full geographic, temporal, and size range of each morphotype were then selected for detailed morphological assessment. The following characters were measured for each specimen: Shell width (mm), truncated shell length (measured from the right, posterior tip of the penultimate whorl to the lowest point of the aperture (mm)), aperture length (mm), aperture width (mm), number of basal ribs (counted), relative shell texture (maximum granule length on the body whorl / truncated shell length), aperture roundness (width / length), and shell roundness (width / length). Truncated shell length was used as most Provanna lack any whorl past the penultimate whorl. Measurements of characters were taken from photographs captured by a mounted AmScope microscope adapter camera attached to a standard dissection microscope (Leica S6D, Leica Microsystems GmbH). A standardized 1-mm marker was present in every photo to allow for standardized measurements. Specimens were kept submerged in > 95% ethanol while images were taken. The line measurement tool within AmScope was used to measure morphological characters. To identify any potential collinearity among shell morphological characters, Pearson correlation coefficients (PCC) were calculated using the package Ggally (Schloerke et al. 2021) in R (v. 4.2.3; R Core Team 2022). One-way ANOVAs were then conducted in base R to identify significant differences in shell morphology among the morphotypes sampled from Costa Rica.

To characterize the radulae of each morphotype, we performed the following protocol. First, the body whorl of the shell was punctured using a sharp probe. The whole animal was then incubated in a 1.5 mL microcentrifuge tube containing a 10% solution of proteinase-k for 5–15 min at 56 °C. Incubation was monitored and terminated once tissue was visibly loose and degraded, but not fully digested. The microcentrifuge tube was removed from the heat source, pulse-vortexed three times, and then its contents were rinsed into a clean glass petri dish using deionized (DI) water. Under a dissection scope, the radular ribbon was identified, extricated from any remaining soft tissue, and moved to another clean glass petri dish containing DI water to further dilute the proteinase-k solution and prevent further breakdown of the radular ribbon. Silicon wafer chips cut into ~ 1 cm3 squares were used as mounting substrate for scanning electron microscopy. To mount the radula, a very small droplet of DI water was placed onto a chip. The radula was then placed into this water droplet and manipulated under a light microscope into a flat, teeth-up position using forceps or a sharp probe. Manipulation was most successful when the radula was wet but not submerged. The radula’s position was monitored and adjusted under a light microscope while the water was allowed to evaporate. Once dry, radulae naturally adhered to the chip’s surface and were then stored dry until imaging. Scanning electron microscopy was undertaken using a QuantaTM 450 FEG scanning electron microscope (FEI 2012) in its low-vacuum setting at Temple University College of Engineering’s Nano Instrumentation Center. High-quality images were obtained without sputter coating. Tentative morphological identities were then ascribed to our specimens.

Genetic analysis

To confirm the morphological identifications, the cytochrome oxidase 1 (CO1) mitochondrial gene and the histone 3 (H3) nuclear gene were sequenced. Tissue was obtained by pulling aside the operculum and pinching off a small sample of tissue from the foot (approximately 1 mm3). This tissue was then digested and its DNA extracted using a Qiagen Blood and Tissue DNA Extraction kit (QIAGEN, Valencia, CA). Extracted DNA was quantitated using a Nanodrop 2000 spectrophotometer. DNA was kept frozen at -20 °C following extraction. A 710 base pair (bp) section of the CO1 gene was targeted for sequencing using the primers LCO1490/HCO2198 and polymerase chain reaction protocol put forth by Folmer et al. (1994). A 274 bp section of the H3 gene was targeted for sequencing using the H3F/H3R primers put forth by Colgan et al. (2000) and the following PCR protocol: 94 °C for 1 min, 40 cycles of 95 °C for 30 seconds, 55 °C for 30 seconds, and 72 °C for 30 seconds, followed by a final extension period of 72 °C for 7 min. Forward and reverse reads were obtained through GeneWiz (Azenta Life Sciences, South Plainfield, NJ). Each sequence was quality-assured, trimmed, and reverse reads were reverse-complemented using the BioEdit desktop software (v. 7.2.5; Hall 1999). Forward and reverse reads were then used to create one consensus sequence per individual.

For all phylogenetic analyses, sequences were input and aligned using ClustalW embedded within the MEGA-X environment (v. 10.0.1; Kumar et al. 2018). The Model Finder embedded within MEGA-X was used to find the best-fit substitution model based on the lowest Bayesian Information Criterion. All base positions with less than 95% site coverage were excluded from analyses. Bootstrap confidences of branch points were assessed using 10,000 bootstrap replicates within MEGA-X. Bayesian topologies and Bayesian posterior probabilities (BPP) of branch points were computed using the joint programs BEAUti (v. 1.10.4) and BEAST (v. 1.10.4) (Suchard et al. 2018). The maximum clade credibility tree was then selected from the BEAST output using TreeAnnotator (v. 1.10.4). The resulting figures were cleaned and finalized using FigTree (v. 1.4.4) (Rambaut 2018) and Adobe Illustrator (v. 27.3.1). All published gene sequences were downloaded from the National Center for Biotechnology Information (NCBI) nucleotide database. All alignments are freely available on Github (Repository: melissajbetters/CRM_Provanna).

To verify inclusion within the genus Provanna, we assessed our novel sequences in relation to other Abyssochrysoids including species in the genera Abyssochrysos (Tomlin, 1927), Cordesia (Warén & Bouchet, 2009), Rubyspira (Johnson et al., 2010), Desbruyeresia (Warén & Bouchet, 1993), Alviniconcha (Okutani & Ohta, 1988), and Ifremeria (Bouchet & Warén, 1991). The Vetigastropods Caymanabyssia solis (Kano et al., 2016) and Notocrater pustulosus (Thiele, 1925) were used as the outgroup for investigations of CO1. The Vetigastropods Lepetodrilus pustulosus (McLean, 1988) and Pyropelta sp. (McLean & Haszprunar, 1987) were used as outgroup for investigations of H3. To verify the specific identity of our specimens, we assessed our novel CO1 sequences in relation to all other Provanna species available on NCBI. While CO1 sequences exist for P. annae (Nekhaev, 2023), these were amplified using a primer set that targeted a different region of the CO1 gene from our novel sequences, thus precluding comparison. To account for intraspecific variation, a maximum of three sequences per species (chosen at random) were included in the tree. Additionally, gene sequences with tentative or unknown identities were also included in case our novel sequences matched these. Desbruyeresia melanioides (Warén & Bouchet, 1993) was used as the outgroup.

To assess the robustness of current species delimitations within the genus, we calculated the average pairwise sequence divergence (APD) across CO1 sequences for Provanna. All sequences with verified species identities were included; Sequences with tentative or unknown species identities were excluded. Our novel sequences were assigned to their hypothesized species identities. All sequences were aligned using ClustalW embedded within MEGA-X and assessed using a Tamura 3-parameter substitution model (Tamura 1992), the pairwise deletion option (threshold = 95%), and 5,000 bootstrap replicates within MEGA-X. We then tested the number of species partitions supported within this dataset using the hierarchical clustering program ASAP (Assemble Species by Automatic Partitioning) (Puillandre et al. 2021).

Key construction

Using the conclusions drawn from the preceding sections, a taxonomic key for all genetically supported, extant species of Provanna was constructed. A polytomous key was chosen as the format to capture the natural variation found in Provanna shells (Fig. 3). Of the morphological characters annotated, we prioritized sorting shells based on aspects of shell sculpturing, as these characters are easily recognized and do not require additional processing to observe. Radular characteristics were only utilized within the key when no other shell character could discern between species. Several morphological characters were excluded from the key either because we determined that they would introduce too much subjectivity in responses (precluding consistent utility), overlapped among species, overlapped with other characters, or varied too much within species. Incorporating our own morphological results, the presence and number of basal ribs and penultimate whorl morphological characters were excluded. It is noted in the key where there is uncertainty in a species hypothesis which is then addressed in the Discussion.

Figure 3 

. Examples of Provanna shell morphological variety A P. kuroshimensis, no sculpturing, growth lines present, flattened suture B–F constricted suture: B P. cooki, spiral sculpture only, no sculptural elements C P. chevalieri, axial sculpture only, no sculptural elements D–F both axial and spiral sculpturing: D P. fenestrata, sculptures about equal in strength, no sculptural elements E P. clathrata, axial sculpture stronger than spiral, blunt, sloping nodules F P. reticulata, spiral sculpture stronger than axial, minor spines.

Results

New occurrence records

Superfamily Abyssochrysoidea

Family Provannidae

Genus Provanna (Dall, 1918)

Provanna laevis Warén & Ponder, 1991

New records

Costa Rica • 25 specimens; Costa Rica Margin, Mound 12; 8.930°N, 84.313°W; 999 m; 22 May 2017; Lisa Levin, Charlotte Seid leg.; ALVIN Dive 4907, from wood; Scripps Benthic Invertebrate Collection (SBIC) M16112. 11 specimens; Costa Rica Margin, Mound 12; 8.930°N, 84.313°W; 1004 m; 25 May 2017; Greg Rouse, Todd Litke leg.; ALVIN Dive 4910, from rock; SBIC M16104 and M16106. 16 specimens; Costa Rica Margin, Mound 12; 8.929°N, 84.315°W; 964 m; 1 June 2017; Greg Rouse, Ben Moran leg.; ALVIN Dive 4917, from mussel shells; SBIC M16176. 89 specimens; Costa Rica Margin, Mound 12; 8.930°N, 84.313°W; 1003 m; 20 October 2018; Lisa Levin, Kyle Metcalfe leg.; ALVIN Dive 4974, from mussel shells; SBIC M16765. 78 specimens; Costa Rica Margin, Mound 12; 8.931°N, 84.313°W; 1004 m; 24 October 2018; Erik Cordes, Melissa Betters leg.; ALVIN Dive 4978, from mussel shells. 104 specimens; Costa Rica Margin, Mound 12; 8.931°N, 84.313°W; 1002–1004 m; 30 October 2018; Erik Cordes, Melissa Betters leg.; ALVIN Dive 4984, from mussel shells. 5 specimens; Costa Rica Margin, Mound 12; 8.930°N, 84.313°W; 1001 m; 31 October 2018; Erik Cordes, Melissa Betters leg.; ALVIN Dive 4985, from mussel shells. 475 specimens; Costa Rica Margin, Mound 12; 8.930°N, 84.312–84.313°W; 1002–1007 m; 2 November 2018; Erik Cordes, Melissa Betters leg.; ALVIN Dive 4987, from tubeworms. 6 specimens; Costa Rica Margin, Jaco Summit; 9.174°N, 84.800°W; 742 m; 6 January 2019; Greg Rouse, Allison Miller leg.; SUBASTIAN Dive 213, from wood; SBIC M17030. 793 specimens; Costa Rica Margin, The Thumb; 9.049°N, 84.354–84.394°W; 1071–1075 m; 10 January 2019; Erik Cordes, Melissa Betters leg.; SUBASTIAN Dive 217, from mussel shells. 22 specimens; Costa Rica Margin, The Thumb; 9.049°N, 84.354–84.394°W; 1071–1075 m; 10 January 2019; Erik Cordes, Melissa Betters leg.; SUBASTIAN Dive 217, from tubeworms.

Remarks

The range of P. laevis is here expanded to three hydrocarbon seep locations at the CRM: Mound 12, Jaco Summit, and The Thumb. Their known distribution in the Eastern Pacific Ocean ranges from the Juan de Fuca Ridge to the Costa Rica Margin. Their known depth distribution in the Eastern Pacific Ocean is between 700–2000 m (Table 4).

Table 4.

Summary of biogeographic information for each known species of Provanna. S = Seep, V = Vent, F = Organic Fall. Note that P. glabra is herein synonymized with P. laevis and P. goniata is herein synonymized with P. ios.

Species Region(s) Localities Depth (m) Habitat Citations
P. abyssalis Okutani & Fujikura, 2002 W Pacific Japan Trench 5379 S Okutani and Fujikura 2002
P. admetoides Warén & Ponder, 1991 Gulf of Mexico Off St. Petersburg, Gulf of Mexico 624–631 S Warén and Ponder 1991
P. annae Nekhaev, 2023 N Pacific Piip Volcano, Bering Sea 387–472 Nekhaev 2023; Rybakova et al. 2023
P. beebi Linse et al., 2019 Caribbean Sea Beebe Vent Field, Mid-Cayman Spreading Center 4956–4972 V Linse et al. 2019
P. buccinoides Warén & Bouchet, 1993 W Pacific Hine Hina, Lau Basin; North Fiji Basin 1900–2765 V Warén and Bouchet 1993
P. chevalieri Warén & Bouchet, 2009 E Atlantic Regab, off West Africa 3150 S Warén and Bouchet 2009
P. cingulata Chen et al., 2018 W Pacific Shinkai Seep Field, Mariana Forearc 5687 S Chen et al. 2018
P. clathrata Sasaki et al., 2016 W Pacific Irabu Knoll, Hatoma Knoll, Yaeyama Knoll, Okinawa Trough; Haima seep, South China Sea; Manus Basin 1385–2190 V,S Sasaki et al. 2016; Miyazaki et al. 2017; Poitrimol et al. 2022; He et al. 2023
P. cooki Linse et al., 2019 Southern East Scotia Ridge, Southern Ocean 2396–2639 V Linse et al. 2019
P. exquisita Chen & Watanabe, 2022 W Pacific Eifuku Volcano, Mariana Arc 1606 V Chen and Watanabe 2022
P. fenestrata Chen et al., 2019 W Pacific Crane, Tarama Hill, Okinawa Trough; Sakai vent field; Haima seep, South China Sea 1385–1973 V,S Chen et al. 2019; He et al. 2023
P. ios Warén & Bouchet, 1986 (Synonymous with: P. goniata Warén & Bouchet, 1986) E Pacific 17 S, 13 N, 21 N, EPR; Guaymas Basin, Gulf of California; Galapagos Rift Zone; Costa Rica Margin 2000–2616 V,S Warén and Bouchet 1986; Warén and Ponder 1991; Warén and Bouchet 2001; This study
P. kuroshimensis Sasaki et al., 2016 W Pacific Kuroshima Knoll, off Okinawa 644 S Sasaki et al. 2016
P. laevis Warén & Ponder, 1991 (Synonymous with: P. glabra Okutani et al., 1992) W & E Pacific Guaymas Basin, Gulf of California; Juan de Fuca; Oregon Margin; Off Hatsushima, Sagami Bay; Minami-Ensei Knoll, Iheya Ridge, Okinawa Trough; Costa Rica Margin 500–2004 V,S Okutani et al. 1992; Warén and Ponder 1991; Okutani and Fujiwara 2000; Warén and Bouchet 2001; Fujikura et al. 2002; This study
P. lomana Warén & Bouchet, 1986 E Pacific Off San Diego, off Point Dume, California; Oregon Margin; Off San Nicolas 450–1200 V,F Warén and Bouchet 1986; Warén and Bouchet 2001; Smith and Baco 2003
P. lucida Sasaki et al., 2016 W Pacific Minami-Ensei Knoll, Okinawa Trough 701 V Sasaki et al. 2016
P. macleani Warén & Bouchet, 1989 E Pacific Oregon Margin 2750 F Warén and Ponder 2001
P. muricata Warén & Bouchet, 1986 E Pacific 21 N, East Pacific Rise; Galapagos Rift 2450–2615 V Warén and Bouchet 1986; Warén and Ponder 1991
P. nassariaeformis Okutani, 1990 W Pacific Snail Pit, Mariana Back-Arc Basin; Manus Basin 1912–3680 V Okutani 1990; Wang et al. 2018
P. pacifica Warén & Bouchet, 1986 E Pacific Gulf of Panama; Oregon Margin; Costa Rica Margin 1017–2750 F Warén and Bouchet 1986; Warén and Bouchet 2001; This study
P. reticulata Warén & Bouchet, 2009 E Atlantic Regab, off West Africa 3150 S Warén and Bouchet 2009
P. sculpta Warén & Ponder, 1991 Gulf of Mexico Off Louisiana, Gulf of Mexico 576 S Warén and Ponder 1991; Warén and Bouchet 2001
P. segonzaci Warén & Ponder, 1991 W Pacific Fiji Back-Arc; Hine Hina, Lau Basin 1750–1900 V Warén and Ponder 1991; Warén and Bouchet 1993
P. shinkaiae Okutani & Fujikura, 2002 W Pacific Japan Trench 5343 S Okutani and Fujikura 2002
P. stephanos Chen et al., 2019 W Pacific Off Hatsushima, Sagami Bay 860–908 S Chen et al. 2019; Chen and Nomaki 2021
P. subglabra Sasaki et al., 2016 W Pacific Hatoma Knoll, Izena Hole, Irabu Knoll, Minami-Ensei Knoll, Yaeyama Knoll, Okinawa Trough; Haima Seep, South China Sea 710–2190 V,S Sasaki et al. 2016; Miyazaki et al. 2017; Xu et al. 2016; He et al. 2023
P. variabilis Warén & Bouchet, 1986 E Pacific Endeavor Segment, Axial Seamount, Explorers Ridge, Juan de Fuca Ridge; Oregon Margin 1500–2927 V Warén and Bouchet 1986; Warén and Bouchet 1993; Warén and Bouchet 2001

Provanna ios Warén & Bouchet, 1986

New records

Costa Rica • 42 specimens; Costa Rica Margin, Jaco Scar; 9.118°N, 84.839°W; 1757 m; 20 March 2017; Elena Perez, Geoff Cook leg.; ALVIN Dive 4874, from tubeworms; SBIC M12301. 3 specimens; Costa Rica Margin, Jaco Scar; 9.115°N, 84.836°W; 1834 m; 27 March 2017; Victoria Orphan, Kat Dawson leg.; ALVIN Dive 4912, from mussels; SBIC M16110 and M16127. 1 specimen; Costa Rica Margin, Jaco Scar; 9.116°N, 84.840°W; 1898 m; 28 March 2017; Greg Rouse, Jorge Cortes leg.; ALVIN Dive 4913, from tubeworms; SBIC M16144. 10 specimens; Costa Rica Margin, Jaco Scar; 9.117°N, 84.840°W; 1802 m; 29 March 2017; Chris Roman, Alanna Durkin leg.; ALVIN Dive 4914, from tubeworms; SBIC M16153, M16164, and M16166. 7 specimens; Costa Rica Margin, Jaco Scar; 9.117°N, 84.840°W; 1806 m; 17 October 2018; Erik Cordes, Rebecca Rutstein leg.; ALVIN Dive 4971, from rocks; SBIC M16730 and M16754. 1 specimen; Costa Rica Margin, Jaco Scar; 9.118°N, 84.840°W; 1803 m; 19 October 2018; Victoria Orphan, Natalya Gallo leg.; ALVIN Dive 4973, from mussels; SBIC M16724. 1 specimen; Costa Rica Margin, Jaco Scar; 9.118°N, 84.840°W; 1803 m; 19 October 2018; Victoria Orphan, Natalya Gallo leg.; ALVIN Dive 4973, from rock; SBIC M16741. 38 specimens; Costa Rica Margin, Jaco Scar; 9.118°N, 84.840°W; 1803 m; 23 October 2018; Erik Cordes, Joanna Klein leg.; ALVIN Dive 4977, from mussels; SBIC M16807. 37 specimens; Costa Rica Margin, Jaco Scar; 9.118°N, 84.841°W; 1780 m; 4 November 2018; Erik Cordes, Melissa Betters leg.; ALVIN Dive 4989, from tubeworms. 40 specimens; Costa Rica Margin, Jaco Scar; 9.117°N, 84.840°W; 1802–1812 m; 7 January 2019; Erik Cordes, Melissa Betters leg.; SUBASTIAN Dive 214, from mussels.

Remarks

Detailed in full below, the specimens of P. ios presented here were previously referred to as P. goniata (Betters et al. 2023). The range of P. ios (inclusive of P. goniata), is here expanded to one seep locality at the CRM (Jaco Scar). Their range now includes the sites 17S, 13N, and 21N at the East Pacific Rise, the Guaymas Basin, the Galapagos Rift Zone, and the Costa Rica Margin between 2000–2616 m depth (Table 4).

Provanna pacifica Warén & Bouchet, 1986

New records

Costa Rica • 3 specimens; Costa Rica Margin, Quepos Seep; 9.031°N, 84.619°W; 1413 m; 7 June 2017; Lisa Levin, Kris Krasnosky leg.; ALVIN Dive 4924, from mussels; SBIC M16204. 6 specimens; Costa Rica Margin, Mound 11; 8.922°N, 84.305°W; 1017 m; 3 November 2018; Victoria Orphan, Hang Yu leg.; ALVIN Dive 4988, on wood; SBIC 16955.

Remarks

The range of P. pacifica is here expanded to one hydrocarbon seep (Quepos Seep) and one organic fall at the CRM (Mound 11). Their occurrence here on Bathymodiolin mussels represents the first time they have been observed as, potentially, permanent denizens of a hydrocarbon seep environment. Their distribution now includes the Oregon Margin, the Costa Rica Margin, and the Gulf of Panama between 1017–2750 m depth (Table 4).

Morphological analysis

In total, 1,817 Provanna specimens were sampled from six sites at the CRM (see Table 1 for details). All specimens were sorted into one of four distinct morphotypes and subsequently assigned the following species identities: Provanna laevis (n = 1624) sampled from Jaco Summit, The Thumb, and Mound 12, Provanna ios (n = 180) sampled from Jaco Scar, Provanna pacifica (n = 9) sampled from Quepos Seep and Mound 11, and Provanna cf. lomana (n = 2) sampled from Mound 11 (Fig. 4). Provanna laevis was identified as it is the only smooth-shelled species from the Eastern Pacific. Our specimens of P. ios fit most closely the morphological description of P. goniata and were originally designated as such (Warén and Bouchet 1986; Betters et al. 2023) However, given our genetic results (detailed in the Results section Genetic Analysis), we amend this original identification to P. ios and address the validity of P. goniata as a distinct species in the Discussion. Specimens of P. pacifica were identified based on their sculpturing, their relatively small size, and the fact that this species was originally described from a soft-bottom, low-productivity seep in the Gulf of Panama very similar to its habitat at Costa Rica (Warén and Bouchet 1986). Provanna cf. lomana was tentatively identified by its unique feature of having only axial sculpturing on its body whorl. Of these specimens, a total of 158 representative Provanna covering the full geographic, temporal, and size range of each morphotype were measured (P. laevis, n = 96; P. ios, n = 52; P. pacifica, n = 8; and P. cf. lomana, n = 2). Representative radulae were successfully extracted and imaged for all species except P. cf. lomana (Fig. 5).

Figure 4. 

Provanna morphotypes sampled from the CRM A, B P. laevis from mussel shells, Mound 12, AD4917, 965 m C, D P. ios from unknown substrate, Jaco Scar, SD214, 1803 m E Specimens of P. pacifica from sunken wood, Mound 11, AD4988, 1017 m F Specimen of P. cf. lomana from mussel shells, Quepos Seep, AD4924, 1413 m. Both the dorsal and ventral view of each shell is shown. Scale bars: 1 mm.

Across all Costa Rican specimens, measurements of shell length, shell width, aperture length, and aperture width showed significant collinearity (PCC > +0.95, all pairs). Because the whorls past the body whorl showed variable levels of degradation, shell size was represented in analyses by aperture length alone, as we had more confidence in this measurement. All species sampled were comparable in size, with Provanna ios being the largest and P. pacifica being the smallest (Fig. 6B). The number of basal ribs, despite being commonly used to describe Provanna species, showed variation across all morphotypes (Fig. 6C). The difference in relative texture between P. ios and P. pacifica was significant (p < 0.001), supporting the utility of their sculptural elements in delineating species (Fig. 6D). In general, shells with granules longer than 3% of the shell length (major spines) were reliably P. ios. Provanna ios had the most oblique shell shape overall (Fig. 6E) and P. laevis had the most oblique aperture shape overall (Fig. 6F).

Figure 5. 

Representative radulae of Costa Rican Provanna species A P. laevis from mussel shells B P. laevis from unknown substrate C P. ios from mussel shells D P. ios from unknown substrate E, F P. pacifica from wood. Scale bars: 20 µm (F); 30 µm (E); 40 µm (C); 50 µm (A, B, D).

Figure 6. 

A the four morphotypes sampled B–F comparison of morphological traits among each morphotype. The number of individuals represented on the graph and included in one-way ANOVAs are denoted by “n =” above or below each bar. Resultant p-values from one-way ANOVAs are denoted above each graph (p-value: 0 < *** < 0.001 < ** < 0.01 < * 0.05). Provanna cf. lomana was excluded from all ANOVAs due to the small number of individuals, but is included here for graphical comparison. Note that the graphs of Shell Roundness E and Aperture Roundness F have y-axes that do not start at zero. Scale bars: 1 mm.

Genetic analysis

CO1 sequences were obtained from our specimens of P. laevis (n = 4), P. ios (n = 2), and P. pacifica (n = 2). All efforts to amplify CO1 for specimens of P. cf. lomana were unsuccessful. CO1 sequences generated were uploaded to GenBank and assigned accession numbers (OM914402OM914408 & OP577954). H3 sequences were obtained from our specimens of P. laevis (n = 1), P. ios (n = 2), P. pacifica (n = 2), and P. cf. lomana (n = 1). H3 sequences generated were uploaded to GenBank and assigned accession numbers (OR687645OR687650).

Phylogenetic analyses support the inclusion of our specimens in the genus Provanna with high confidence for CO1 (Bayesian Posterior Probability (BPP) = 100, ML = 90) (Fig. 7A) and H3 (BPP = 100, ML = 93) (Fig. 7B). Species-level investigations showed that sequences from the same Provanna species nested together and away from others on the tree (Fig. 8). Our specimens of P. laevis nested among P. laevis and P. glabra with high confidence and little to no distinction (BPP = 100, Bootstrap = 92). Despite our samples matching the physical description of P. goniata, these grouped together with sequences of P. ios and P. aff. ios with moderate confidence (BPP = 85). These were, however, all delineated as the sister group to P. variabilis (BPP = 100, Bootstrap = 80). Our specimens of P. pacifica grouped together and away from all other species on the tree (BPP = 100, Bootstrap = 99), though they were most closely related to P. aff. pacifica. However, given that P. pacifica has never been barcoded before, and that our specimens closely match the physical description and geographic distribution of the species proper, we assert that our specimens are indeed P. pacifica.

Figure 7. 

Bayesian topology of Abyssochrysoid gastropod mollusks A topology based on a 449 bp region of the mitochondrial CO1 gene. Topology was inferred using the HKY+G+I substitution model B topology based on a 266 bp region of the nuclear H3 gene. Novel sequences are bolded and highlighted in yellow. Numbers above branch nodes represent Bayesian posterior probabilities. Numbers below branch nodes represent the proportion of replicate trees in which the associated taxa clustered together in the bootstrap test (10,000 replicates). Only values above 50% are shown. The tree is drawn to scale, with branch lengths representing the number of base substitutions accumulated over time.

Figure 8. 

Bayesian phylogenetic tree of Provanna based on a 452 bp region of the mitochondrial CO1 gene. Novel sequences are bolded and highlighted in yellow. Topology was inferred using the HKY+G+I substitution model. Numbers above branch nodes represent Bayesian posterior probabilities. Numbers below branch nodes represent the proportion of replicate trees in which the associated taxa clustered together in the bootstrap test (10,000 replicates). Only values above 50 are shown. The tree is drawn to scale, with branch lengths representing the number of base substitutions accumulated over time.

Sequences of unknown identity (Provanna sp. 1 (GQ290577) and Provanna sp. 2 (GQ290578)) did not group together with any known species on the tree. Sequences from the Manus Basin that were previously identified as P. clathrata (Poitrimol et al. 2022) nested with high confidence among sequences of P. clathrata from the Okinawa Trough (Sasaki et al. 2016) (BPP = 100, Bootstrap = 99), confirming this identification and the range expansion for this species (see Table 4). As previously found, sequences from the Woodlark and Lau Basins group apart from all other known species on tree, as well as each other (Poitrimol et al. 2022) (BPP = 100, Bootstrap = 99). However, more detailed morphological investigations are needed to address whether these represent P. buccinoides, P. segonzaci, or one or more new species.

Average pairwise sequence divergences (APD) were computed across CO1 sequences (n = 236) (Table 5). APD calculations confirmed Provanna species as being more closely related to each other than to the outgroup (ingroup < 0.2 < outgroup). Almost all APD calculations fell between 0.05–0.13, confirming robust species distinctions overall within this genus (Hebert et al. 2003; Johnson et al. 2008). One exception to this was P. glabra and P. laevis, which showed very low sequence divergence (APD = 0.01, SE = 0.00). Provanna variabilis also appeared closely related to P. ios (APD = 0.04, SE = 0.01), supporting the topology from Fig. 8 designating them as sister clades. Comparisons within species were limited to those with more than one representative CO1 sequence, thus excluding P. cingulata, P. cooki, P. exquisita, P. fenestrata, P. lomana, P. sculpta, P. shinkaiae, and P. stephanos. Of the remaining species, average within-species APD’s fell below 0.03, confirming that intraspecific divergence was lower than interspecific divergence across Provanna species.

Table 5.

Genetic distance estimates among and within known Provanna species. Distances were calculated using the Tamura 3-parameter model and 5,000 bootstrap replicates. Numbers below central margin represent the number of base substitutions per site, averaging over all sequence pairs. Numbers above central margin represents standard errors. The central margin represents within-group genetic distances. Calculations were conducted using 236 total nucleotide sequences. Outgroup = Desbruyeresia melanioides.

Provanna 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
1. beebi 0.00 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.02 0.02 0.01 0.02 0.02 0.03
2. cingulata 0.06 NA 0.02 0.01 0.03 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.03
3. clathrata 0.11 0.12 0.01 0.02 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.02 0.03
4. cooki 0.06 0.06 0.11 NA 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.03
5. exquisita 0.09 0.11 0.08 0.09 NA 0.02 0.02 0.02 0.02 0.02 0.02 0.03 0.03 0.02 0.02 0.03 0.02 0.02 0.02 0.05
6. fenestrata 0.11 0.11 0.08 0.10 0.08 NA 0.02 0.02 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.02 0.02 0.03
7. glabra 0.09 0.12 0.11 0.10 0.08 0.09 0.01 0.01 0.02 0.00 0.01 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.04
8. ios 0.10 0.11 0.10 0.11 0.08 0.10 0.08 0.02 0.01 0.01 0.01 0.02 0.02 0.02 0.01 0.01 0.02 0.02 0.01 0.04
9. kuroshimensis 0.10 0.11 0.11 0.09 0.10 0.08 0.08 0.08 0.01 0.02 0.01 0.02 0.02 0.01 0.02 0.02 0.02 0.02 0.01 0.03
10. laevis 0.09 0.11 0.10 0.10 0.08 0.09 0.01 0.07 0.08 0.01 0.01 0.02 0.02 0.02 0.01 0.02 0.02 0.02 0.01 0.04
11. lomana 0.10 0.10 0.10 0.08 0.07 0.08 0.06 0.08 0.07 0.07 NA 0.02 0.02 0.02 0.01 0.02 0.02 0.02 0.01 0.03
12. lucida 0.13 0.12 0.11 0.11 0.12 0.12 0.14 0.13 0.11 0.14 0.12 0.00 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.03
13. macleani 0.09 0.10 0.11 0.09 0.10 0.10 0.09 0.11 0.09 0.09 0.11 0.12 0.00 0.02 0.02 0.02 0.02 0.02 0.02 0.03
14. pacifica 0.08 0.09 0.08 0.09 0.08 0.08 0.09 0.09 0.08 0.09 0.08 0.10 0.09 0.00 0.01 0.02 0.01 0.02 0.02 0.03
15. sculpta 0.09 0.10 0.08 0.09 0.06 0.08 0.08 0.08 0.08 0.08 0.06 0.13 0.11 0.08 NA 0.02 0.01 0.02 0.01 0.03
16. shinkaiae 0.09 0.11 0.10 0.11 0.10 0.11 0.09 0.06 0.09 0.09 0.09 0.11 0.11 0.10 0.09 NA 0.02 0.02 0.01 0.04
17. stephanos 0.09 0.10 0.04 0.10 0.05 0.07 0.10 0.08 0.09 0.09 0.08 0.10 0.10 0.07 0.07 0.10 NA 0.01 0.01 0.03
18. subglabra 0.10 0.10 0.07 0.11 0.08 0.09 0.10 0.10 0.12 0.10 0.09 0.14 0.11 0.12 0.09 0.11 0.08 0.01 0.02 0.03
19. variabilis 0.11 0.11 0.11 0.11 0.08 0.10 0.08 0.04 0.08 0.08 0.08 0.13 0.11 0.10 0.08 0.07 0.09 0.11 0.03 0.03
20. Outgroup 0.23 0.24 0.22 0.25 0.24 0.24 0.26 0.27 0.24 0.26 0.25 0.24 0.22 0.25 0.25 0.28 0.24 0.24 0.26 0.01

Hierarchical clustering performed by ASAP yielded 14 discreet subsets from an input of 19 hypothesized species (n = 236 sequences, p < 0.0001): (1) P. glabra-P. laevis, (2) P. variabilis-P. ios, (3) P. pacifica, (4) P. fenestrata, (5) P. cooki, (6), P. beebi, (7), P. cingulata, (8) P. exquisita-P. stephanos-P. clathrata, (9) P. sculpta, (10) P. lomana, (11) P. macleani, (12) P. subglabra, (13) P. kuroshimensis, (14) P. lucida. The threshold distance (Dt) used to partition the samples into species was 0.0496 (p < 0.0001) and the most common genetic distance between sequence pairs fell between 0.09–0.1.

Polytomous key for species identification

1 Only axial sculpturing 2
Only spiral sculpturing 3
Both axial and spiral sculpturing 4
No sculpturing present 5
2 Axial sculpture extends to the posterior end of the aperture, but not into the basal area P. lomana
Axial sculpture does not extend to the posterior end of the aperture, instead stopping midway down the body whorl P. chevalieri
3 Shell is thin and translucent; One can easily see through the shell 6
Shell is not noticeably translucent; One cannot easily see through the shell 7
4 Sculptural elements absent 9
Sculptural elements present 10
5 Sculptural elements present P. beebi
Sculptural elements absent 26
6 1–3 spiral ribs on the body whorl above the posterior end of the aperture P. lucida
4 or more spiral ribs on the body whorl above the posterior end of the aperture P. cingulata
7 Central radular teeth highly diminished, being very narrow with a very truncated, cusp (see Fig. 2C for definitions) P. macleani
Central radular teeth broad with a truncated cusp and a flat or rounded anterior ridge P. beebi
Central radular teeth broad with a very short cusp and concave anterior ridge P. reticulata
Central teeth are typical of genus with a triangular cusp 8
8 First lateral teeth have long, lobate major denticles and an obtuse buttress angle (see Fig. 2C for definitions) P. cooki (see Discussion)
First lateral teeth have long, triangular major denticles and an acute buttress angle P. variabilis (see Discussion)
9 Axial and spiral sculptures are strong, raised, and equally spaced, creating a regular lattice-like sculpture (see Fig. 3D for example 11
Regular, lattice-like sculpture is not formed 12
10 Sculptural elements are major spines (see Fig. 2A for definitions) 13
Sculptural elements are minor spines 14
Sculptural elements are punctuated, rounded beads 15
Sculptural elements are blunt and sloping nodules 16
11 There are more than 30 axial ribs on the body whorl and 2–3 spiral ribs P. admetoides
There are 15–20 spiral ribs on the body whorl and 1–2 spiral ribs P. fenestrata
12 Central radular teeth highly diminished and narrow with a very truncated, cusp (see Fig. 2C for definitions) P. macleani
Central radular teeth broad with a short cusp and a flattened anterior ridge P. chevalieri
13 Major spines on the second or third spiral rib on the body whorl connect at times to form a flattened shelf or keel 17
Major spines do not obviously connect nor do they form a flattened keel 18
14 There are more than 30 axial ribs on the body whorl, forming a regular, lattice-like sculpture P. admetoides
There are fewer than 30 axial ribs on the body whorl 19
15 Shell globose; Shell roundness (Shell Width / Truncated Length) (see Fig. 2B) > 0.65 P. nassariaeformis
Shell not globose; Shell roundness < 0.65 22
16 Axial and spiral sculptures are strong, evenly raised, and equally spaced, creating a regular lattice-like sculpture (see Fig. 3D for example) P. fenestrata
Axial and spiral sculptures vary in strength across the body whorl; Regular, lattice-like sculpture is not formed 23
17 Axial ribs form clear cords that are present along the entire body whorl, rectangular lattice-like sculpturing formed (see Fig. 3D for example) P. exquisita
Axial ribs vary in strength along the body whorl, sometimes disappearing entirely, no clear lattice-like sculpturing formed P. stephanos
18 Shell is very slender; Shell roundness (Shell Width / Truncated Length) (see Fig. 2B) < 0.55 P. shinkaiae (see Discussion)
Shell roundness > 0.55 P. ios (previously P. goniata) (see Discussion)
19 Central radular teeth highly diminished and narrow with a very truncated, cusp (see Fig. 2C for definitions) P. pacifica
Central radular teeth broad with a very short, blunt cusp P. reticulata
Central radular teeth are typical of genus with a triangular cusp 20
20 Anterior end of aperture has a round, globose shape P. muricata
Anterior end of aperture has elongated, tapering shape 21
21 First lateral teeth have major denticles that are notched on the internal edge and rounded (see Fig. 2C for definitions) P. segonzaci
First lateral teeth have major denticles that are not notched 22
22 Shell is globose; Shell roundness (Shell Width / Truncated Length) (see Fig. 2B) ≥ 0.6 P. clathrata (see Discussion)
Shell is slender; Shell roundness ≤ 0.55 P. ios (previously goniata) (see Discussion)
23 Sculptural elements appear as small pockmarks and extend to the anterior end of the shell P. beebi
Sculptural elements appear as flat lines of beads arranged longitudinally, stopping abruptly at the first basal rib P. sculpta
24 Axial sculpture varies in strength across the body whorl, sometimes disappearing entirely or extending only part of the way down the body whorl P. variabilis
Axial sculpture is strong and even along the body whorl 25
25 Central radular teeth are highly diminished and narrow with a very truncated, cusp (see Fig. 2C for definitions) P. pacifica
Central radular teeth are broad with blunt cusps and rounded or flat anterior ridges P. buccinoides
Central radular teeth are typical of genus with triangular cusps 26
26 First lateral teeth have major denticles that are notched interiorly and lobate (see Fig. 2C for definitions) P. segonzaci
Marginal teeth alternate in form between having 15–20 denticles P. muricata
Marginal teeth all have between 9–10 denticles P. clathrata
27 Shell is thin and translucent, one can easily see the body through the shell 28
Shell is not noticeably translucent 29
28 Central radular teeth have a long, triangular cusp; first lateral teeth have major denticles that are long and lobate (see Fig. 2C for definitions) P. annae (see Discussion)
Central radular teeth have a short, triangular cusp; first lateral teeth have major denticles that are long and triangular P. lucida (see Discussion)
29 Shell suture is highly constricted, giving the whorls an inflated, rounded appearance 30
Shell suture is not highly constricted 31
30 Shell roundness (Shell Width / Truncated Length) (see Fig. 2B) ~ 0.5 P. abyssalis
Shell roundness ~ 0.6 P. cooki
31 First lateral teeth have very truncated, short denticles P. laevis
First lateral teeth have long major denticles 32
32 Central teeth have short, blunt cusps; lateral teeth have major denticles that are long, lobate (see Fig. 2C for definitions) P. laevis (previously P. glabra)
Central teeth have long, sharp, triangular cusps; lateral teeth have major denticles that are long, lobate P. kuroshimensis (see Discussion)
Central teeth have long, sharp, triangular cusps; lateral teeth have major denticles that are long, sharp P. subglabra (see Discussion)

Discussion

This study presents new records and gene sequences for P. laevis, P. ios, P. pacifica, and P. cf. lomana from the Costa Rica Margin. Integrating these novel morphological and genetic data, we review the distinction among species and present the first polytomous identification key for the genus Provanna. In both our morphological and genetic investigations, similarities among species were revealed and are discussed below.

Cryptic species

Several Provanna species show little to no morphological distinction. For example, certain shell morphotypes of P. clathrata and P. ios have no discernable differences from one another besides the number of denticles on their outer marginal teeth (P. clathrata have about ten while P. ios have about 20) (Table 3). Certain shell morphotypes of P. ios and P. shinkaiae may also resemble one another. Yet, the lobate major denticles of P. shinkaiae’s first lateral teeth distinguish it from P. ios. Depending on morphotype, P. cooki and P. variabilis may also display criticism. Both may have no axial ribs, three spiral ribs on the body whorl, and no sculptural elements. However, they may be distinguished by the shape of the major denticles of their first lateral teeth (Table 3). Finally, P. annae and P. lucida both have unsculptured, translucent shells with constricted sutures. Their distinguishing feature is the shape of the major denticles of their first lateral teeth (P. annae are lobate, P. lucida are triangular). Regardless of the reliability of these radular characteristics, each of these species pairs may also be readily distinguished through CO1 barcoding (Table 5) (Nekhaev 2023).

The smooth-shelled species P. laevis, P. glabra, P. kuroshimensis, and P. subglabra are also morphologically indistinguishable based on shell characters (Table 3). All species have no sculpturing, slender shells, and a flattened suture. Provanna subglabra may be distinguished from the other three by having long, sharp major denticles on its first lateral teeth. Similarly, P. laevis should be distinguishable by having truncated, lobate denticles on its first lateral teeth and its location in the Eastern Pacific. Contrary to expectations, the radulae of our specimens from the CRM closely resembled that of P. glabra or P. kuroshimensis with long, lobate major denticles (Fig. 5A, B). Genetic characterization could not distinguish P. laevis from P. glabra, but could readily distinguish P. kuroshimensis (Fig. 8, Table 5).

Specimens collected from the Costa Rica Margin revealed that not all shell characters are useful in delineating species. Despite its widespread use in taxonomic descriptions, the number of basal ribs showed notable variation within species. Furthermore, as basal ribs are often very weak and difficult to count consistently, these were not used as a taxonomically informative characters in the key, nor do we recommend their use in distinguishing species in the future.

Species delimitation

Our genetic investigations supported most current taxonomic delimitations, finding robust genetic distances among the 19 species from which CO1 sequences exist. Nonetheless, automatic partitioning based on CO1 supported the consolidation of several species. Provanna variabilis and P. ios, for example, were not partitioned. However, as these species are distinguished in both our phylogenetic analyses as well as by their morphological characteristics, more data are needed to verify this genetic similarity before taxonomic revision is undertaken. Similarly, the species P. exquisita, P. stephanos, and P. clathrata were also not partitioned. However, as these are also distinguished in our phylogenetic analyses and by their shell and radular characteristics, we believe more data are needed to warrant collapse.

Provanna laevis from the Eastern Pacific and P. glabra from the Western Pacific exhibited significant genetic overlap in our species-level phylogeny (Fig. 8), our distance matrix (Table 5) and were not distinguished during automatic partitioning. This similarity has been noted by previous studies (Sasaki et al. 2016; Linse et al. 2019). Given that CO1 seems informative for the rest of this genus, this similarity is noteworthy. Both P. laevis and P. glabra inhabit similar depth ranges, a variety of chemosynthesis-based environments, and are morphologically indistinct in all but radular morphology (Warén and Bouchet 1986; Okutani et al. 1992), which may not be sufficient to indicate complete lineage sorting. They have typically been distinguished by their distributions. Nevertheless, there may be numerous, undiscovered chemosynthetic sites, including large biomass falls (e.g., whale falls) that could provide the stepping stones necessary for connectivity across the Pacific. Furthermore, Pacific northern equatorial and subsurface counter currents may transport upper and lower layers of water, respectively, from west to east along the 7°N latitude (Kessler 2006), coinciding neatly with the region of study in Costa Rica (~ 8–9°N). Conversely, water upwelled at the Costa Rica Dome may flow east across the Pacific via the Northern Equatorial Current (Kessler 2006) and into the North Pacific Gyre, where it may realistically encounter the Eastern shores of Japan and even the Western shores of North America. Recent work supports the highly adaptable nature of P. laevis, which may explain a very broad distribution (Betters et al. 2023). Given these morphological, genetic, and biogeographic data, collected over several independent studies (Sasaki et al. 2016; Linse et al. 2019; Betters et al. 2023) and supported once again here, it is thus recommended that P. glabra and P. laevis be considered one species. As P. glabra is the younger name, we here synonymize it with P. laevis, as per the International Code of Zoological Nomenclature Article 23.1. These species are thus treated as synonymous hereafter.

Specimens of P. ios from the CRM were originally identified as P. goniata, given that their shells are decorated with major spines rather than minor spines (Fig. 4C, D) and that they are found at hydrocarbon seeps, rather than that at hydrothermal vents (Betters et al. 2023). We first reconsidered this identification when genetic barcoding of both CO1 and H3 could not reliably distinguish these specimens from P. ios (Figs 7, 8, Table 5). Furthermore, recent work has found that when specimens at the CRM were sampled from higher concentrations of hydrocarbons and sulfides, they tended to have more slender, thinner, and larger shells (Betters et al. 2023). This means that as they inhabit more vent-like conditions, they resemble more closely the vent species P. ios (Table 3). Thus, it is highly likely that these two species are actually ecotypes of a single molecular taxonomic unit, where P. ios is the vent ecotype and P. goniata is the seep ecotype. Additionally, both species are found at similar depths in the Eastern Tropical Pacific. Given that this study presents one of the most extensive collections of the morphospecies P. goniata known to date and is the first to genetically characterize them, we suggest that P. goniata and P. ios are one species. As P. goniata is the younger name, we here synonymize it with P. ios, as per the International Code of Zoological Nomenclature Article 23.1. These species are thus treated as synonymous hereafter.

Biogeography

Provanna are currently found in nearly every oceanic basin (Table 4). While many original descriptions distinguish species based on oceanic basin, the effect of geographic distance on population divergence of these gastropods from chemosynthetic habitats remains unclear (Distel et al. 2000; Vrijenhoek 2010; Breusing et al. 2023). For instance, while P. laevis (inclusive of P. glabra) spans the entire perimeter of the Northern Pacific Gyre with little genetic distinction, P. laevis, P. kuroshimensis, P. lucida, and P. subglabra all have overlapping biogeographic ranges at the Okinawa Trough yet display marked genetic divergence. Provanna are also notably adaptable across habitats, with six species currently known from more than one chemosynthesis-based ecosystem. These results indicate that more work is still needed to understand the drivers of genetic variation and isolation within this genus across a variety of contexts.

Finally, this study amends the biogeographic distribution of P. muricata. This species is listed as present in the North Fiji and Lau Basins in several secondary sources (Sasaki et al. 2016; Linse et al. 2019) based on Desbruyeres et al. (2006). This resource, however, does not present new records of occurrence, and instead summarizes known occurrence records. However, no primary literature nor museum specimens exist that place this species there. Therefore, until specimens are collected from the Western Pacific Basins and positively identified as P. muricata, this study proposes an amendment to their published biogeographic range, limiting it to the Eastern Pacific vents from which they were first found and described (Table 4).

Conclusions

This study expands the ranges of P. laevis, P. ios, and P. pacifica to hydrocarbon seeps at the Pacific Costa Rica Margin. We also present a thorough review of the genus Provanna, consolidating the geographic distributions, genetics, and morphology for each extant species. We find that shell and radular morphological characters may be used to identify Provanna species and present the first identification key for this group. We also find that current species delineations within the genus Provanna are, for the most part, well-supported by genetic data. For those that are not, we herein synonymize P. glabra with P. laevis and P. goniata with P. ios. Future work will no doubt reveal new morphological varieties, species, and occurrences of Provanna snails. This key is designed to be a starting point from which researchers may begin this vital work.

Acknowledgements

We thank the crews of the R/V Falkor during FK19-0106, the R/V Atlantis during AT37-10, AT37-13, and AT42-03, as well as the operating teams of HOV ALVIN, ROV SUBASTIAN, and AUV Sentry from 2017–2019. We thank Ellen Strong, Greg Rouse, Charlotte Seid, Daniel Geiger, and Shannon Johnson for providing material that benefitted this project. We thank Dmitriy Dikin for his assistance in capturing scanning electron microscope images as well as Chloe Berger and Liv Nguyen for their molecular laboratory assistance. We also thank the science team aboard the R/V Thompson cruise TN401 for volunteering to test an early draft of this key. We thank Chong Chen, Eike Neubert, and one anonymous reviewer for their valuable feedback which improved this manuscript. Finally, we thank the people and nation of Costa Rica for allowing us to conduct this scientific research in their national waters.

Additional information

Conflict of interest

The authors have declared that no competing interests exist.

Ethical statement

No ethical statement was reported.

Funding

This research was supported by the National Science Foundation (OCE 1635219), Temple Uni-versity, and the American Malacological Society.

Author contributions

Conceptualization: EEC, MJB. Data curation: MJB. Formal analysis: MJB. Funding acquisition: EEC. Investigation: MJB. Methodology: MJB. Supervision: EEC. Validation: EEC. Visualization: MJB. Writing – original draft: MJB. Writing – review and editing: EEC.

Author ORCIDs

Melissa J. Betters https://orcid.org/0000-0002-8975-257X

Erik E. Cordes https://orcid.org/0000-0002-6989-2348

Data availability

Gene sequences generated in this study are accessible on GenBank under the accession numbers OM914402OM914408, OP577954, and OR687645OR687650. Morphological and genetic data from novel specimens are available on Github (Repository: melissajbetters/CRM_Provanna) or through correspondence with the lead author. The data underpinning the analysis reported in this paper are deposited at GBIF, the Global Biodiversity Information Facility, and are available at [https://doi.org/10.15468/4w9oc7] and [https://ipt.pensoft.net/resource?r=crm_provanna].

References

  • Amano K, Little CT (2012) Miocene abyssochrysoid gastropod Provanna from Japanese seep and whale-fall sites. Acta Palaeontologica Polonica 59(1): 163–172. https://doi.org/10.4202/app.2012.0002
  • Betters M, Stabbins A, Keller A, Cordes E (2023) Biogeography and depth partitioning in deep‐sea gastropods at the Pacific Costa Rica Margin. Journal of Biogeography 50(12): 2109–2121. https://doi.org/10.1111/jbi.14722
  • Bouchet P, Warén A (1991) Ifremeria nautilei, nouveau gastéropode d’évents hydrothermaux, probablement associé à des bactéries symbiotiques. Comptes Rendus de l’Académie des Sciences, Paris 312(3): 495–501.
  • Breusing C, Johnson SB, Mitarai S, Beinart RA, Tunnicliffe V (2023) Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models. Evolutionary Applications 16(1): 22–35. https://doi.org/10.1111/eva.13326
  • Cavanaugh CM, Gardiner SL, Jones ML, Jannasch HW, Waterbury JB (1981) Prokaryotic cells in the hydrothermal vent tube worm Riftia pachyptila Jones: Possible chemoautotrophic symbionts. Science 213(4505): 340–342. https://doi.org/10.1126/science.213.4505.340
  • Chen C, Watanabe HK, Ohara Y (2018) A very deep Provanna (Gastropoda: Abyssochrysoidea) discovered from the Shinkai seep field, southern Mariana Forearc. Journal of the Marine Biological Association of the United Kingdom 98(3): 439–447. https://doi.org/10.1017/S0025315416001648
  • Chen C, Watanabe HK, Sasaki T (2019) Four new deep-sea provannid snails (Gastropoda: Abyssochrysoidea) discovered from hydrocarbon seep and hydrothermal vents in Japan. Royal Society Open Science 6(7): e190393. https://doi.org/10.1098/rsos.190393
  • Colgan DJ, Ponder WF, Eggler PE (2000) Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences. Zoologica Scripta 29(1): 29–63. https://doi.org/10.1046/j.1463-6409.2000.00021.x
  • Desbruyeres D, Segonzac M, Bright M (2006) Handbook of deep-sea hydrothermal vent fauna. Denisia 18: e132.
  • Distel DL, Baco AR, Chuang E, Morrill W, Cavanaugh C, Smith CR (2000) Do mussels take wooden steps to deep-sea vents? Nature 403(6771): 725–726. https://doi.org/10.1038/35001667
  • Engel MS, Ceríaco LM, Daniel GM, Dellapé PM, Löbl I, Marinov M, Reis RE, Young MT, Dubois A, Agarwal I, Lehmann AP (2021) The taxonomic impediment: A shortage of taxonomists, not the lack of technical approaches. Zoological Journal of the Linnean Society 193(2): 381–387. https://doi.org/10.1093/zoolinnean/zlab072
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3(5): 294–299. https://europepmc.org/article/med/7881515
  • Fujikura K, Hashimoto J, Okutani T (2002) Estimated population densities of megafauna in two chemosynthesis based communities: A cold seep in Sagami Bay and a hydrothermal vent in the Okinawa Trough. Benthos Research 57(1): 21–30. https://doi.org/10.5179/benthos1996.57.1_21
  • Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
  • He X, Xu T, Chen C, Liu X, Li YX, Zhong Z, Gu X, Lin YT, Lan Y, Yan G, Sun Y, Qiu J-W, Qian P-Y, Sun J (2023) Same (sea) bed different dreams: Biological community structure of the Haima seep reveals distinct biogeographic affinities. The Innovation Geoscience 1(2): e100019. https://doi.org/10.59717/j.xinn-geo.2023.100019
  • Hebert PD, Cywinska A, Ball SL, DeWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B, Biological Sciences 270(1512): 313–321. https://doi.org/10.1098/rspb.2002.2218
  • Johnson SB, Warén A, Lee RW, Kano Y, Kaim A, Davis A, Strong EE, Vrijenhoek RC (2010) Rubyspira, new genus and two new species of bone-eating deep-sea snails with ancient habits. The Biological Bulletin 219(2): 166–177. https://doi.org/10.1086/BBLv219n2p166
  • Kano Y, Takano T, Schwabe E, Warén A (2016) Phylogenetic position and systematics of the wood-associate limpet genus Caymanabyssia and implications for ecological radiation into deep-sea organic substrates by lepetelloid gastropods. Marine Ecology 37(5): 1116–1130. https://doi.org/10.1111/maec.12376
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35(6): 1547–1549. https://doi.org/10.1093/molbev/msy096
  • Linse K, Nye V, Copley JT, Chen C (2019) On the systematics and ecology of two new species of Provanna (Gastropoda: Provannidae) from deep-sea hydrothermal vents in the Caribbean Sea and Southern Ocean. The Journal of Molluscan Studies 85(4): 425–438. https://doi.org/10.1093/mollus/eyz024
  • Miyazaki J, Kawagucci S, Makabe A, Takahashi A, Kitada K, Torimoto J, Matsui Y, Tasumi E, Shibuya T, Nakamura K, Horai S, Sato S, Ishibashi J, Kanzaki H, Nakagawa S, Hirai M, Takaki Y, Okino K, Watanabe HK, Kumagai H, Chen C (2017) Deepest and hottest hydrothermal activity in the Okinawa Trough: The Yokosuka site at Yaeyama Knoll. Royal Society Open Science 4(12): e171570. https://doi.org/10.1098/rsos.171570
  • McLean JH (1988) New archaeogastropod limpets from hydrothermal vents; superfamily Lepetodrilacea I. Systematic descriptions. Philosophical Transactions of the Royal Society of London, Series B, Biological Sciences 319(1192): 1–32. https://doi.org/10.1098/rstb.1988.0031
  • Nekhaev IO (2023) Who lives in the hot heart of the cold sea? A new species of Provanna (Caenogastropoda: Provannidae) from the Hydrothermal zone of Piip Volcano, Northwestern Pacific. Diversity 15(4): e581. https://doi.org/10.3390/d15040581
  • Okutani T (1990) Two new species of Provanna (Gastropoda: Cerithiacea) from “snail pit” in the hydrothermal vent site at the Mariana Back-Arc Basin. Venus 49(1): 19–24. https://doi.org/10.18941/venusjjm.49.1_19 [Japanese Journal of Malacology]
  • Okutani T, Fujikura K (2002) Abyssal gastropods and bivalves collected by Shinkai 6500 on slope of the Japan Trench. Venus 60(4): 211–224. https://doi.org/10.18941/venus.60.4_211 [Journal of the Malacological Society of Japan]
  • Okutani T, Tsuchida E, Fujikura K (1992) Five bathyal gastropods living within or near the Calyptogena-community of the Hatsushima Islet, Sagami Bay. Venus 51(3): 137–148. https://doi.org/10.18941/venusjjm.51.3_137
  • Poitrimol C, Thiébaut É, Daguin-Thiébaut C, Le Port AS, Ballenghien M, Tran Lu YA, Jollivet D, Hourdez S, Matabos M (2022) Contrasted phylogeographic patterns of hydrothermal vent gastropods along South West Pacific: Woodlark Basin, a possible contact zone and/or stepping-stone. PLOS ONE 17(10): e0275638. https://doi.org/10.1371/journal.pone.0275638
  • R Core Team (2022) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. https://www.R-project.org/ [Accessed 1 December 2023]
  • Rybakova E, Krylova E, Mordukhovich V, Galkin S, Alalykina I, Sanamyan N, Nekhaev I, Vinogradov G, Shilov V, Pakhnevich A, Gebruk A, Adrianov A (2023) Mega-and macrofauna of the hydrothermally active submarine Piip Volcano (the southwestern Bering Sea). Deep-sea Research, Part II, Topical Studies in Oceanography 208: e105268. https://doi.org/10.1016/j.dsr2.2023.105268
  • Sasaki T, Ogura T, Watanabe HK, Fujikura K (2016) Four new species of Provanna (Gastropoda: Provannidae) from vents and a seep off Nansei-shoto area, southwestern Japan. Venus 74: 1–7. https://doi.org/10.18941/venus.74.1-2_1
  • Sasaki T, Warén A, Kano Y, Okutani T, Fujikura K (2010) Gastropods from recent hot vents and cold seeps: systematics, diversity and life strategies. In: Kiel S (Ed.) The Vent and Seep Biota: Aspects from Microbes to Ecosystems. Springer Science & Business Media, Dordrecht, 169–254. https://doi.org/10.1007/978-90-481-9572-5_7
  • Schloerke B, Cook D, Larmarange J, Briatte F, Marbach M, Thoen E, Elberg A, Crowley J (2021) GGally: Extension to ‘ggplot2’_. R package (v. 2.1.2). https://CRAN.R-project.org/package=GGally [Accessed 1 December 2023]
  • Sibuet M, Olu K (1998) Biogeography, biodiversity and fluid dependence of deep-sea cold-seep communities at active and passive margins. Deep-sea Research, Part II, Topical Studies in Oceanography 45(1–3): 517–567. https://doi.org/10.1016/S0967-0645(97)00074-X
  • Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ, Rambaut A (2018) Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution 4(1): vey016. https://doi.org/10.1093/ve/vey016
  • Suess E (2014) Marine cold seeps and their manifestations: Geological control, biogeochemical criteria and environmental conditions. International Journal of Earth Sciences 103(7): 1889–1916. https://doi.org/10.1007/s00531-014-1010-0
  • Thiele J (1925) Gastropoden der Deutschen Tiefsee-Expedition. II Teil. Wissenschaftliche Ergebnisse der Deutschen Tiefsee-Expedition auf dem Dampfer “Valdivia” 1898–1899. 17(2): 35–382.
  • Tomlin JRB (1927) Reports on the Marine Mollusca in the Collections of the South African Museum. II. Families Abyssochrysidae, Oocorythidae, Haliotidae, Tonnidae. Annals of the South African Museum 25(1): 77–83.
  • Wang X, Li C, Wang M, Zheng P (2018) Stable isotope signatures and nutritional sources of some dominant species from the PACManus hydrothermal area and the Desmos caldera. PLoS ONE 13(12): e0208887. https://doi.org/10.1371/journal.pone.0208887
  • Warén A, Bouchet P (2009) New gastropods from deep-sea hydrocarbon seeps off West Africa. Deep-sea Research, Part II, Topical Studies in Oceanography 56(23): 2326–2349. https://doi.org/10.1016/j.dsr2.2009.04.013
  • Warén A, Ponder WF (1991) New species, anatomy, and systematic position of the hydrothermal vent and hydrocarbon seep gastropod family Provannidae fam. n. (Caenogastropoda). Zoologica Scripta 20(1): 27–56. https://doi.org/10.1111/j.1463-6409.1991.tb00273.x
  • Xu T, Sun J, Chen C, Qian PY, Qiu JW (2016) The mitochondrial genome of the deep-sea snail Provanna sp. (Gastropoda: Provannidae). Mitochondrial DNA, Part A, DNA Mapping, Sequencing, and Analysis 27(6): 4026–4027. https://doi.org/10.3109/19401736.2014.1003827
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