#NEXUS [written Thu Apr 07 11:53:31 CDT 2016 by Mesquite version 3.04 (build 725) at nrsa-dhcp-215.inhs.illinois.edu/128.174.157.215] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=46; TAXLABELS Ancestor Actogidiella Aequigidiella Afridiella Artesia Aurobogidiella 'Bogidiella (albertimagni group)' 'Bogidiella (skopljensis group)' 'Bogidiella (niphargoides group)' Bermudagidiella Antillogidiella Dycticogidiella Guagidiella Hagidiella Medigidiella Arganogidiella Indogidiella Mesochthongidiella Mexigidiella Orchestigidiella Stygogidiella Argentinogidiella Xystriogidiella Xystriogidiella_juliani Bogidomma Bollegidia Cabogidiella Eobogidiella_purmamarcensis Hebraegidiella Kergueleniola Maghrebidiella Marigidiella Marinobogidiella Megagidiella Nubigidiella Patagongidiella Patagongidiella_wefkoi Parabogidiella Spelaeogammarus Grossogidiella Stockigidiella Omangidiella Fidelidiella Racovella Glyptogidiella Eobogidiella_indica_n._sp._ ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=29; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6"; CHARSTATELABELS 1 Modifications_of_the_outer_ramus_in_male_pleopod_1 / absent present, 2 Modifications_of_the_outer_ramus_in_male_pleopod_2 / absent present, 3 'Number of outer ramus segments in pleopods 1-3' / 3_or_more_sements 3_segments 2_or_3_segments 2_or_less_segments, 4 'Inner rami of pleopods 1-3' / 'multiarticulate, aequieramous' 'uniarticulate, aequiramous' 'uniarticulate, small' 'uniarticulate, reduced' vestigial absent, 5 Modifications_in_male_uropod_1 / absent spines_modified 'rami/peduncle and spines modified', 6 Modifications_in_male_uropod_2 / absent spines_modified rami_and_spines_modified, 7 'Dagger-shaped rami in female uropod 1' / absent present, 8 'Dagger-shaped rami in female uropod 2' / absent present, 9 'Dagger-shaped rami in male uropod 1' / absent present, 10 'Dagger-shaped rami in male uropod 2' / absent present, 11 Rami_of_uropod_3 / 'biramous, aequiramous' biramous_with_inner_ramus_greatly_in_size_reduced uniramous, 12 Outer_ramus_of_uropod_3 / '1-segmented' '2-segmented', 13 Gills / 'on pereonites 2-6' 'on pereonites 3-6 or 3-5' 'on pereonites 4-6' 'on pereonites 4-7', 14 Oostegites / 'on pereopods 2-5' 'on pereopods 2-5 or 3-5' 'on pereopods 3-5' 'on pereopods 3-4' '"absent"', 15 Number_of_segments_in_flagellum_of_antenna_2 / 5_or_more_segments 5_segments 5_or_less_segments, 16 Number_of_segments_in_accessory_flagellum / 3_or_more_segments 2_or_3_segments 2_segments 1_segment, 17 Number_of_palp_segments_in_maxilla_1 / 2_segments '1-2 segments' 1_segment, 18 Number_of_setae_on_inner_lobe_of_maxilla_1 / 3_setae 2_or_3_setae 2_setae 1_or_2_setae 1_seta setae_absent, 19 Number_of_spines_on_outer_lobe_of_maxilla_1 / 9_spines 7_or_8_spines 7_spines 6_or_7_spines 6_spines, 20 Maxilla_2 / normal reduced, 21 Mandibular_molar / triturative 'non-triturative', 22 Coxal_plates / longer_than_wide wider_than_long, 23 Telson_shape / longer_than_wide approximately_as_long_as_wide wider_than_long, 24 Apical_spines_of_telson / 4_or_more_spines 2_or_3_spines 2_spines 1_or_2_spines 1_spine spines_absent, 25 Subapical_spines_of_telson / '3-5 spines' '2-4 spines' 2_spines 1_or_2_spines 1_spines 0_or_1_spine spines_absent, 26 Mediosternal_processes / absent present, 27 Eyes / eyes_present '2-3 unpigmented lens cells' eyes_absent, 28 'Maxilliped, coxal endite' / present absent, 29 Coxa_5 / normal hypertrophied ; MATRIX Ancestor 00000000000000000000000000000 Actogidiella 01151010100020200220111460210 Aequigidiella 00000200000012120420010220210 Afridiella 00130000000020020220102430200 Artesia 00000000000001112521101060210 Aurobogidiella ??03??11??0010130020012460210 'Bogidiella (albertimagni group)'00150000000021120110012350210 'Bogidiella (skopljensis group)' 00130000000020110120011450210 'Bogidiella (niphargoides group)'00140000000020110020012440210 Bermudagidiella 0115??10??0020120220112440210 Antillogidiella 01130010000020120220112460210 Dycticogidiella 0113020000002?121020010440210 Guagidiella 00132000000020220220112440210 Hagidiella 01151000000020120220112540210 Medigidiella 00150100000020210220012360210 Arganogidiella 0015100000002?100220012440210 Indogidiella 00131100000020000220012360210 Mesochthongidiella 11130200000020120020010420210 Mexigidiella 11140000000021120130111440210 Orchestigidiella 001410000000202202200123402?0 Stygogidiella 01150000000020110120012350210 Argentinogidiella 1113010000002?121220010430210 Xystriogidiella 01130100000020100020012330210 Xystriogidiella_juliani 001500??00003?220510012220210 Bogidomma ??15??00??0020120521110260010 Bollegidia 00350011110013122510011460210 Cabogidiella 00150010100000120220112340210 Eobogidiella_purmamarcensis ??13??00??00??122020012410210 Hebraegidiella 001300??00??2?100220012460210 Kergueleniola ??31??????001?030440012560210 Maghrebidiella ??14??00??0020120520112220200 Marigidiella 00220011110020122221110460210 Marinobogidiella 001200??11001?122021012460210 Megagidiella 00130000000020130020011100210 Nubigidiella ??15??00??0010120520112460200 Patagongidiella 0102200000002?000020010241210 Patagongidiella_wefkoi 0112200000002?000020010021210 Parabogidiella 0010000000000?132521110240210 Spelaeogammarus 00110000000020000020000310210 Grossogidiella 0002000000002?000020010241210 Stockigidiella 001500??00001?120240112560210 Omangidiella ??15??00??0020130020010020200 Fidelidiella ??15??????002?120521112260210 Racovella ??13??????001?120040012260210 Glyptogidiella ??15??????002?122541100260211 Eobogidiella_indica_n._sp._ 001311??00001?132220112510210 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 29; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 29; END; BEGIN NOTES; TEXT TAXA = Taxa TAXON = 7 TEXT = '=''Bogidiella A'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 8 TEXT = '=''Bogidiella B'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 9 TEXT = '=''Bogidiella C'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 15 TEXT = '=''Medigidiella A'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 16 TEXT = '=''Medigidiella B'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 17 TEXT = '=''Medigidiella C'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 21 TEXT = '=''Stygogidiella A'' from Koenemann & Holsinger (1999)'; TEXT TAXA = Taxa TAXON = 22 TEXT = '=''Stygogidiella B'' from Koenemann & Holsinger (1999)'; AN T = 29 A = 0 DC = 2015.8.17.10.52.42 DM = 2015.8.17.10.52.42 ID = 014f3c5cdcf31 I = _ TF = (CM ) ; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1460048011699; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5783266539923845005; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 28 29 30 31 32 33 34 35 38 36 39 54 38 40 41 42 43 44 45; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3220447671341312822; mqVersion 304; checksumv 0 3 3287486929 null getNumChars 29 numChars 29 getNumTaxa 46 numTaxa 46 short true bits 127 states 127 sumSquaresStatesOnly 120469.0 sumSquares 120469.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1247 913; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3220447671341312822 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 194; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1147 841; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames off; toggleShowTaxonNames on; toggleTight off; toggleThinRows on; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 200; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor; tell It; makeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1147 841; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam; endTell; rowsAreCharacters on; toggleConstrainChar on; toggleConstrainCharNum 3; togglePanel off; toggleSummaryPanel off; endTell; showWindow; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #3220447671341312822 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1147 841; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;