Towards a Global Names Architecture: The future of indexing scientific names

Richard Pyle

doi:10.3897/zookeys.550.10009

Eva María Domínguez Noya, Vítor Míguez (2022)
Unha mellora do CORGA extrapolable a outros corpus e linguas: a etiquetaxe da nomenclatura científica binomial. Estudos de Lingüística Galega : .

DOI: 10.15304/elg.14.8452

David Patterson, Dmitry Mozzherin, David Shorthouse, Anne Thessen (2016)
Challenges with using names to link digital biodiversity information. Biodiversity Data Journal 4: .

DOI: 10.3897/BDJ.4.e8080

Brian Stucky, James Balhoff, Narayani Barve, Vijay Barve, Laura Brenskelle, Matthew Brush, Gregory Dahlem, James Gilbert, Akito Kawahara, Oliver Keller, Andrea Lucky, Peter Mayhew, David Plotkin, Katja Seltmann, Elijah Talamas, Gaurav Vaidya, Ramona Walls, Matt Yoder, Guanyang Zhang, Rob Guralnick (2019)
Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. Biodiversity Data Journal 7: .

DOI: 10.3897/BDJ.7.e33303

Richard L. Pyle, Saroj K. Barik, Les Christidis, Stijn Conix, Mark John Costello, Peter Paul van Dijk, Stephen T. Garnett, Donald Hobern, Paul M. Kirk, Aaron M. Lien, Thomas M. Orrell, David Remsen, Scott A. Thomson, Nina Wambiji, Frank E. Zachos, Zhi-Qiang Zhang, Kevin R. Thiele (2021)
Towards a global list of accepted species V. The devil is in the detail. Organisms Diversity & Evolution 21: 657.

DOI: 10.1007/s13127-021-00504-0

Nathan S. Upham, Jacob A. Esselstyn, Walter Jetz, Andrew J. Tanentzap (2019)
Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation. PLOS Biology 17: e3000494.

DOI: 10.1371/journal.pbio.3000494

Nhung T. H. Nguyen, Axel J. Soto, Georgios Kontonatsios, Riza Batista-Navarro, Sophia Ananiadou, Robert Guralnick (2017)
Constructing a biodiversity terminological inventory. PLOS ONE 12: e0175277.

DOI: 10.1371/journal.pone.0175277

Dana L. Campbell, Anne E. Thessen, Leslie Ries (2020)
A novel curation system to facilitate data integration across regional citizen science survey programs. PeerJ 8: e9219.

DOI: 10.7717/peerj.9219

Nhung Nguyen, Roselyn Gabud, Sophia Ananiadou (2019)
COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature. Biodiversity Data Journal 7: .

DOI: 10.3897/BDJ.7.e29626

Samuel H. Church, Seth Donoughe, Bruno A. S. de Medeiros, Cassandra G. Extavour (2019)
A dataset of egg size and shape from more than 6,700 insect species. Scientific Data 6: .

DOI: 10.1038/s41597-019-0049-y

Samuel H. Church, Seth Donoughe, Bruno A. S. de Medeiros, Cassandra G. Extavour (2019)
Insect egg size and shape evolve with ecology but not developmental rate. Nature 571: 58.

DOI: 10.1038/s41586-019-1302-4

Nozomi Ytow (2016)
Taxonaut: an application software for comparative display of multiple taxonomies with a use case of GBIF Species API. Biodiversity Data Journal 4: .

DOI: 10.3897/BDJ.4.e9787

Jonathan Rees, Karen Cranston (2017)
Automated assembly of a reference taxonomy for phylogenetic data synthesis. Biodiversity Data Journal 5: .

DOI: 10.3897/BDJ.5.e12581

Giovanni Rapacciuolo, Jessica L. Blois (2019)
Understanding ecological change across large spatial, temporal and taxonomic scales: integrating data and methods in light of theory. Ecography 42: 1247.

DOI: 10.1111/ecog.04616

Carla Cicero, Michelle S. Koo, Emily Braker, John Abbott, David Bloom, Mariel Campbell, Joseph A. Cook, John R. Demboski, Andrew C. Doll, Lindsey M. Frederick, Angela J. Linn, Teresa J. Mayfield-Meyer, Dusty L. McDonald, Michael W. Nachman, Link E. Olson, Dawn Roberts, Derek S. Sikes, Christopher C. Witt, Elizabeth A. Wommack, Carlo Meloro (2024)
Arctos: Community-driven innovations for managing natural and cultural history collections. PLOS ONE 19: e0296478.

DOI: 10.1371/journal.pone.0296478

Thomas Pape (2017)
Editorial: BZN goes electronic-only. The Bulletin of Zoological Nomenclature 74: 4.

DOI: 10.21805/bzn.v74.a003

Gabriel Muñoz, W. Daniel Kissling, E. Emiel van Loon (2019)
Biodiversity Observations Miner: A web application to unlock primary biodiversity data from published literature. Biodiversity Data Journal 7: .

DOI: 10.3897/BDJ.7.e28737

Ricardo A. Correia, Ivan Jarić, Paul Jepson, Ana C.M. Malhado, José A. Alves, Richard J. Ladle (2018)
Nomenclature instability in species culturomic assessments: Why synonyms matter. Ecological Indicators 90: 74.

DOI: 10.1016/j.ecolind.2018.02.059

Ijaz Hussain, Sohail Asghar (2017)
A survey of author name disambiguation techniques: 2010–2016. The Knowledge Engineering Review 32: .

DOI: 10.1017/S0269888917000182

Kathryn A Sullivan, Erika M Tucker, Nicolas J Dowdy, Julie M Allen, Vijay Barve, James H Boone, Sarah E Bush, Neal L Evenhuis, Michael Hastriter, Jessica E Light, Teresa Mayfield-Meyer, Barry M OConnor, Jorrit H Poelen, Gabor R Racz, Katja C Seltmann, Jennifer M Zaspel, Jeffrey Lozier (2023)
Building a community-based taxonomic resource for digitization of parasites and their hosts. Insect Systematics and Diversity 7: .

DOI: 10.1093/isd/ixad023

Nico M. Franz, Chao Zhang, Joohyung Lee (2018)
A logic approach to modelling nomenclatural change. Cladistics 34: 336.

DOI: 10.1111/cla.12201

Savvas Paragkamian, Georgia Sarafidou, Dimitra Mavraki, Christina Pavloudi, Joana Beja, Menashè Eliezer, Marina Lipizer, Laura Boicenco, Leen Vandepitte, Ruben Perez-Perez, Haris Zafeiropoulos, Christos Arvanitidis, Evangelos Pafilis, Vasilis Gerovasileiou (2022)
Automating the Curation Process of Historical Literature on Marine Biodiversity Using Text Mining: The DECO Workflow. Frontiers in Marine Science 9: .

DOI: 10.3389/fmars.2022.940844

Brandon Seah (2023)
Paying it forward: Crowdsourcing the harmonisation and linking of taxon names and biodiversity identifiers. Biodiversity Data Journal 11: .

DOI: 10.3897/BDJ.11.e114076

Marco Sigovini, Erica Keppel, Davide Tagliapietra, Nick Isaac (2016)
Open Nomenclature in the biodiversity era. Methods in Ecology and Evolution 7: 1217.

DOI: 10.1111/2041-210X.12594

Peter G. Beninger, Thierry Backeljau (2019)
Understanding taxonomic and nomenclatural instability – a case study of the Manila clam. Aquaculture 504: 375.

DOI: 10.1016/j.aquaculture.2019.02.016

Viktor Senderov, Kiril Simov, Nico Franz, Pavel Stoev, Terry Catapano, Donat Agosti, Guido Sautter, Robert A. Morris, Lyubomir Penev (2018)
OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system. Journal of Biomedical Semantics 9: .

DOI: 10.1186/s13326-017-0174-5

Aurélien Miralles, Teddy Bruy, Katherine Wolcott, Mark D Scherz, Dominik Begerow, Bank Beszteri, Michael Bonkowski, Janine Felden, Birgit Gemeinholzer, Frank Glaw, Frank Oliver Glöckner, Oliver Hawlitschek, Ivaylo Kostadinov, Tim W Nattkemper, Christian Printzen, Jasmin Renz, Nataliya Rybalka, Marc Stadler, Tanja Weibulat, Thomas Wilke, Susanne S Renner, Miguel Vences, Matt Friedman (2020)
Repositories for Taxonomic Data: Where We Are and What is Missing. Systematic Biology 69: 1231.

DOI: 10.1093/sysbio/syaa026

Emily L. Sandall, Aurore A. Maureaud, Robert Guralnick, Melodie A. McGeoch, Yanina V. Sica, Matthew S. Rogan, Douglas B. Booher, Robert Edwards, Nico Franz, Kate Ingenloff, Maisha Lucas, Charles J. Marsh, Jennifer McGowan, Stefan Pinkert, Ajay Ranipeta, Peter Uetz, John Wieczorek, Walter Jetz (2023)
A globally integrated structure of taxonomy to support biodiversity science and conservation. Trends in Ecology & Evolution 38: 1143.

DOI: 10.1016/j.tree.2023.08.004

Sandra Young (2019)
Using lexicography to characterise relations between species mentions in the biodiversity literature. Proceedings of the 3rd International Conference on Digital Access to Textual Cultural Heritage : 143.

DOI: 10.1145/3322905.3322918