Lyubomir Penev, Mariya Dimitrova, Viktor Senderov, Georgi Zhelezov, Teodor Georgiev, Pavel Stoev, Kiril Simov (2019)
OpenBiodiv: A Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science.
Publications7: 38.
DOI: 10.3390/publications7020038
Beckett Sterner, Joeri Witteveen, Nico Franz (2020)
Coordinating dissent as an alternative to consensus classification: insights from systematics for bio-ontologies.
History and Philosophy of the Life Sciences42: .
DOI: 10.1007/s40656-020-0300-z
Thierry Bourgoin, Nicolas Bailly, René Zaragueta, Régine Vignes-Lebbe (2021)
Complete formalization of taxa with their names, contents and descriptions improves taxonomic databases and access to the taxonomic knowledge they support.
Systematics and Biodiversity19: 738.
DOI: 10.1080/14772000.2021.1915895
Beckett Sterner, Steve Elliott, Edward E Gilbert, Nico M Franz (2023)
Unified and pluralistic ideals for data sharing and reuse in biodiversity.
Database2023: .
DOI: 10.1093/database/baad048
Nico M. Franz, Naomi M. Pier, Deeann M. Reeder, Mingmin Chen, Shizhuo Yu, Parisa Kianmajd, Shawn Bowers, Bertram Ludäscher (2016)
Two Influential Primate Classifications Logically Aligned.
Systematic Biology65: 561.
DOI: 10.1093/sysbio/syw023
Thomas Pape (2017)
Editorial: BZN goes electronic-only.
The Bulletin of Zoological Nomenclature74: 4.
DOI: 10.21805/bzn.v74.a003
Min Hyung Cho, Kwang-Hwi Cho, Kyoung Tai No (2023)
PhyloSophos: a high-throughput scientific name mapping algorithm augmented with explicit consideration of taxonomic science, and its application on natural product (NP) occurrence database processing.
BMC Bioinformatics24: .
DOI: 10.1186/s12859-023-05588-3
Beckett Sterner, Nathan Upham, Atriya Sen, Nico Franz (2020)
Avenues into Integration: Communicating taxonomic intelligence from sender to recipient.
Biodiversity Information Science and Standards4: .
DOI: 10.3897/biss.4.59006
Nico M. Franz, Lukas J. Musher, Joseph W. Brown, Shizhuo Yu, Bertram Ludäscher, Sergei L. Kosakovsky Pond (2019)
Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion.
PLOS Computational Biology15: e1006493.
DOI: 10.1371/journal.pcbi.1006493
Amélia Carlos Tuler, Carolyn Elinore Barnes Proença, Tatiana Tavares Carrijo, Ariane Luna Peixoto (2018)
Typification and nomenclatural notes on Psidium cattleyanum (Myrtaceae).
TAXON67: 1194.
DOI: 10.12705/676.17
Ross Mounce, Malin Rivers, Suzanne Sharrock, Paul Smith, Samuel Brockington (2018)
Comparing and contrasting threat assessments of plant species at the global and sub-global level.
Biodiversity and Conservation27: 907.
DOI: 10.1007/s10531-017-1472-z
Colin Favret (2024)
The 5 ‘D’s of Taxonomy: A User’s Guide.
The Quarterly Review of Biology99: 131.
DOI: 10.1086/732044
Nico Franz, Edward Gilbert, Beckett Sterner (2019)
Distributed, but Global in Reach: Outline of a de-centralized paradigm for biodiversity data intelligence.
Biodiversity Information Science and Standards3: .
DOI: 10.3897/biss.3.37749
Dana L. Campbell, Anne E. Thessen, Leslie Ries (2020)
A novel curation system to facilitate data integration across regional citizen science survey programs.
PeerJ8: e9219.
DOI: 10.7717/peerj.9219
Beckett Sterner, Nathan Upham, Prashant Gupta, Caleb Powell, Nico Franz (2021)
Wanted: Standards for FAIR taxonomic concept representations and relationships .
Biodiversity Information Science and Standards5: .
DOI: 10.3897/biss.5.75587
Brandon Seah (2023)
Paying it forward: Crowdsourcing the harmonisation and linking of taxon names and biodiversity identifiers.
Biodiversity Data Journal11: .
DOI: 10.3897/BDJ.11.e114076
Nico M. Franz, Chao Zhang, Joohyung Lee (2018)
A logic approach to modelling nomenclatural change.
Cladistics34: 336.
DOI: 10.1111/cla.12201
Brian Stucky, James Balhoff, Narayani Barve, Vijay Barve, Laura Brenskelle, Matthew Brush, Gregory Dahlem, James Gilbert, Akito Kawahara, Oliver Keller, Andrea Lucky, Peter Mayhew, David Plotkin, Katja Seltmann, Elijah Talamas, Gaurav Vaidya, Ramona Walls, Matt Yoder, Guanyang Zhang, Rob Guralnick (2019)
Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.
Biodiversity Data Journal7: .
DOI: 10.3897/BDJ.7.e33303
J. W. dos Santos, R. A. Correia, A. C. M. Malhado, J. V. Campos‐Silva, D. Teles, P. Jepson, R. J. Ladle (2020)
Drivers of taxonomic bias in conservation research: a global analysis of terrestrial mammals.
Animal Conservation23: 679.
DOI: 10.1111/acv.12586
Matteo Conti, Pier Luigi Nimis, Stefano Martellos (2021)
Match Algorithms for Scientific Names in FlorItaly, the Portal to the Flora of Italy.
Plants10: 974.
DOI: 10.3390/plants10050974
Yi‐Yun Cheng, Nico Franz, Jodi Schneider, Shizhuo Yu, Thomas Rodenhausen, Bertram Ludäscher (2017)
Agreeing to disagree: Reconciling conflicting taxonomic views using a logic‐based approach.
Proceedings of the Association for Information Science and Technology54: 46.
DOI: 10.1002/pra2.2017.14505401006
Viktor Senderov, Kiril Simov, Nico Franz, Pavel Stoev, Terry Catapano, Donat Agosti, Guido Sautter, Robert A. Morris, Lyubomir Penev (2018)
OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system.
Journal of Biomedical Semantics9: .
DOI: 10.1186/s13326-017-0174-5
Ryan A. Folk, Carolina M. Siniscalchi (2021)
Biodiversity at the global scale: the synthesis continues.
American Journal of Botany108: 912.
DOI: 10.1002/ajb2.1694
M. Andrew Johnston, Rolf Aalbu, Nico Franz (2018)
An updated checklist of the Tenebrionidae sec. Bousquet et al. 2018 of the Algodones Dunes of California, with comments on checklist data practices.
Biodiversity Data Journal6: .
DOI: 10.3897/BDJ.6.e24927
Jessica Tam, Malgorzata Lagisz, Will Cornwell, Shinichi Nakagawa (2022)
Quantifying research interests in 7,521 mammalian species with h-index: a case study.
GigaScience11: .
DOI: 10.1093/gigascience/giac074
Ricardo A. Correia, Ivan Jarić, Paul Jepson, Ana C.M. Malhado, José A. Alves, Richard J. Ladle (2018)
Nomenclature instability in species culturomic assessments: Why synonyms matter.
Ecological Indicators90: 74.
DOI: 10.1016/j.ecolind.2018.02.059
Kari E. A. Norman, Scott Chamberlain, Carl Boettiger, Samantha Price (2020)
taxadb: A high‐performance local taxonomic database interface.
Methods in Ecology and Evolution11: 1153.
DOI: 10.1111/2041-210X.13440
Büşra Kaya, Mehtap Bayır (2024)
Computational analysis of superoxide dismutase genes (sod1, sod2, and sod3) and comprehensive tissue-specific gene expression profiling in Tetraodon (Tetraodon nigroviridis).
Ege Journal of Fisheries and Aquatic Sciences41: 261.
DOI: 10.12714/egejfas.41.4.02
David Patterson, Dmitry Mozzherin, David Shorthouse, Anne Thessen (2016)
Challenges with using names to link digital biodiversity information.
Biodiversity Data Journal4: .
DOI: 10.3897/BDJ.4.e8080
Fortunate M Phaka, Jean Hugé, Fortune Ravhuanzwo, Maarten PM Vanhove, Louis H du Preez (2025)
Naming South African frogs and reptiles in nine Indigenous languages.
African Journal of Herpetology
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DOI: 10.1080/21564574.2024.2441663
Simon Scheider, Frank O. Ostermann, Benjamin Adams (2017)
Why good data analysts need to be critical synthesists. Determining the role of semantics in data analysis.
Future Generation Computer Systems72: 11.
DOI: 10.1016/j.future.2017.02.046
Nico Franz, Edward Gilbert, Bertram Ludäscher, Alan Weakley (2016)
Controlling the taxonomic variable: Taxonomic concept resolution for a southeastern United States herbarium portal.
Research Ideas and Outcomes2: .
DOI: 10.3897/rio.2.e10610
Nico M. Franz, Mingmin Chen, Parisa Kianmajd, Shizhuo Yu, Shawn Bowers, Alan S. Weakley, Bertram Ludäscher, Krysztof Janowicz, Benjamin Adams, Birgitta König-Ries, Deborah McGuinness, Mark Schildhauer (2016)
Names are not good enough: Reasoning over taxonomic change in the Andropogon complex1.
Semantic Web7: 645.
DOI: 10.3233/SW-160220
Beckett Sterner, Nico M. Franz (2017)
Taxonomy for Humans or Computers? Cognitive Pragmatics for Big Data.
Biological Theory12: 99.
DOI: 10.1007/s13752-017-0259-5
Desalegn Chala, Dag Endresen, Sebsebe Demissew, Laura A. Slaughter, Einar Broch Johnsen, Nils Chr. Stenseth (2024)
Stop using racist, unethical, and inappropriate names in taxonomy.
Proceedings of the National Academy of Sciences121: .
DOI: 10.1073/pnas.2415490121
Stephanie Walton, Laurence Livermore, Olaf Bánki, Robert Cubey, Robyn Drinkwater, Markus Englund, Carole Goble, Quentin Groom, Christopher Kermorvant, Isabel Rey, Celia Santos, Ben Scott, Alan Williams, Zhengzhe Wu (2020)
Landscape Analysis for the Specimen Data Refinery.
Research Ideas and Outcomes6: .
DOI: 10.3897/rio.6.e57602
Cynthia S. Parr, Anne E. Thessen (2018)
Ecological Informatics.
Chapter 17: 375.
DOI: 10.1007/978-3-319-59928-1_17
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