Biodiversity information platforms: From standards to interoperability

Walter Berendsohn; Anton Güntsch; Niels Hoffmann; Andreas Kohlbecker; Katja Luther; Andreas Müller

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Nicolas Bailly, Vasilis Gerovasileiou, Christos Arvanitidis, Anastasios Legakis (2016)
Introduction to the Greek Taxon Information System (GTIS) in LifeWatchGreece: the construction of the Preliminary Checklists of Species of Greece. Biodiversity Data Journal 4: e7959.

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Takeshi Osawa (2019)
Perspectives on biodiversity informatics for ecology. Ecological Research 34: 446.

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Daniel Fuentes, Nicola Fiore (2014)
The LifeWatch approach to the exploration of distributed species information. ZooKeys 463: 133.

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Willem Coetzer, Mark Lisher (2024)
Biodiversity Data Curation as a Profession in South African Natural Science Museums. Curator: The Museum Journal : .

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Anne Bruneau, Leonardo M. Borges, Robert Allkin, Ashley N. Egan, Manuel de la Estrella, Firouzeh Javadi, Bente Klitgaard, Joseph T. Miller, Daniel J. Murphy, Carole Sinou, Mohammad Vatanparast, Rong Zhang (2019)
Towards a new online species-information system for legumes. Australian Systematic Botany 32: 495.

DOI: 10.1071/SB19025

Thomas D. Hamann, Andreas Müller, Marinus C. Roos, Marc Sosef, Erik Smets (2014)
Detailed mark‐up of semi‐monographic legacy taxonomic works using FlorML. TAXON 63: 377.

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Alex David Rogers, Hannah Appiah-Madson, Jeff A. Ardron, Nicholas J. Bax, Punyasloke Bhadury, Angelika Brandt, Pier-Luigi Buttigieg, Olivier De Clerck, Claudia Delgado, Daniel L. Distel, Adrian Glover, Judith Gobin, Maila Guilhon, Shannon Hampton, Harriet Harden-Davies, Paul Hebert, Lisa Hynes, Miranda Lowe, Sandy MacIntyre, Hawis Madduppa, Ana Carolina de Azevedo Mazzuco, Anna McCallum, Chris McOwen, Tim Wilhelm Nattkemper, Mika Odido, Tim O’Hara, Karen Osborn, Angelique Pouponneau, Pieter Provoost, Muriel Rabone, Eva Ramirez-Llodra, Lucy Scott, Kerry Jennifer Sink, Daniela Turk, Hiromi Kayama Watanabe, Lauren V. Weatherdon, Thomas Wernberg, Suzanne Williams, Lucy Woodall, Dawn J. Wright, Daniela Zeppilli, Oliver Steeds (2023)
Accelerating ocean species discovery and laying the foundations for the future of marine biodiversity research and monitoring. Frontiers in Marine Science 10: .

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Yde de Jong, Melina Verbeek, Verner Michelsen, Per de Place Bjørn, Wouter Los, Fedor Steeman, Nicolas Bailly, Claire Basire, Przemek Chylarecki, Eduard Stloukal, Gregor Hagedorn, Florian Wetzel, Falko Glöckler, Alexander Kroupa, Günther Korb, Anke Hoffmann, Christoph Häuser, Andreas Kohlbecker, Andreas Müller, Anton Güntsch, Pavel Stoev, Lyubomir Penev (2014)
Fauna Europaea – all European animal species on the web. Biodiversity Data Journal 2: e4034.

DOI: 10.3897/BDJ.2.e4034

Okka Tschöpe, James A. Macklin, Robert A. Morris, Lutz Suhrbier, Walter G. Berendsohn (2013)
Annotating biodiversity data via the Internet. TAXON 62: 1248.

DOI: 10.12705/626.4

Manthos Panou, Spyros Gkelis (2022)
Unravelling unknown cyanobacteria diversity linked with HCN production. Molecular Phylogenetics and Evolution 166: 107322.

DOI: 10.1016/j.ympev.2021.107322

Marco Sigovini, Erica Keppel, Davide Tagliapietra, Nick Isaac (2016)
Open Nomenclature in the biodiversity era. Methods in Ecology and Evolution 7: 1217.

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Lauren V. Weatherdon, Ward Appeltans, Nadine Bowles-Newark, Thomas M. Brooks, Frances E. Davis, Katherine Despot-Belmonte, Stephen Fletcher, Cristina Garilao, Craig Hilton-Taylor, Tim Hirsch, Diego Juffe-Bignoli, Kristin Kaschner, Naomi Kingston, Kelly Malsch, Eugenie C. Regan, Kathleen Kesner-Reyes, David C. Rose, Florian T. Wetzel, Tim Wilkinson, Corinne S. Martin (2017)
Blueprints of Effective Biodiversity and Conservation Knowledge Products That Support Marine Policy. Frontiers in Marine Science 4: .

DOI: 10.3389/fmars.2017.00096

Thomas Borsch, Patricia Hernández-Ledesma, Walter G. Berendsohn, Hilda Flores-Olvera, Helga Ochoterena, Fernando O. Zuloaga, Sabine von Mering, Norbert Kilian (2015)
An integrative and dynamic approach for monographing species-rich plant groups – Building the global synthesis of the angiosperm order Caryophyllales. Perspectives in Plant Ecology, Evolution and Systematics 17: 284.

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Gabriele Droege, Till Töpfer (2016)
The Corvids Literature Database—500 years of ornithological research from a crow’s perspective. Database 2016: bav122.

DOI: 10.1093/database/bav122

Alexandre Mestre, Juan S. Monrós, Francesc Mesquita-Joanes (2014)
A review of the Entocytheridae (Ostracoda) of the world: updated bibliographic and species checklists and global georeferenced database, with insights into host specificity and latitudinal patterns of species richness. Crustaceana 87: 923.

DOI: 10.1163/15685403-00003337

Luiz M. R. Gadelha, Pedro C. de Siracusa, Eduardo Couto Dalcin, Luís Alexandre Estevão da Silva, Douglas A. Augusto, Eduardo Krempser, Helen Michelle Affe, Raquel Lopes Costa, Maria Luiza Mondelli, Pedro Milet Meirelles, Fabiano Thompson, Marcia Chame, Artur Ziviani, Marinez Ferreira de Siqueira (2021)
A survey of biodiversity informatics: Concepts, practices, and challenges. WIREs Data Mining and Knowledge Discovery 11: .

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Rutger Vos, Jordan Biserkov, Bachir Balech, Niall Beard, Matthew Blissett, Christian Brenninkmeijer, Tom van Dooren, David Eades, George Gosline, Quentin Groom, Thomas Hamann, Hannes Hettling, Robert Hoehndorf, Ayco Holleman, Peter Hovenkamp, Patricia Kelbert, David King, Don Kirkup, Youri Lammers, Thibaut DeMeulemeester, Daniel Mietchen, Jeremy Miller, Ross Mounce, Nicola Nicolson, Rod Page, Aleksandra Pawlik, Serrano Pereira, Lyubomir Penev, Kevin Richards, Guido Sautter, David Shorthouse, Marko Tähtinen, Claus Weiland, Alan Williams, Soraya Sierra (2014)
Enriched biodiversity data as a resource and service. Biodiversity Data Journal 2: e1125.

DOI: 10.3897/BDJ.2.e1125

Jonas Hausen, Björn Scholz-Starke, Ulrich Burkhardt, Stephan Lesch, Sebastian Rick, David Russell, Martina Roß-Nickoll, Richard Ottermanns (2017)
Edaphostat: interactive ecological analysis of soil organism occurrences and preferences from the Edaphobase data warehouse. Database 2017: .

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D.J. Russell, E. Naudts, N.A. Soudzilovskaia, M.J.I. Briones, M. Çakır, E. Conti, J. Cortet, C. Fiera, D. Hackenberger Kutuzovic, M. Hedde, K. Hohberg, D. Indjic, P.H. Krogh, R. Lehmitz, S. Lesch, Z. Marjanovic, C. Mulder, L. Mumladze, M. Murvanidze, S. Rick, M. Roß-Nickoll, J. Schlaghamerský, O. Schmidt, O. Shelef, M. Suhadolc, M. Tsiafouli, A. Winding, A. Zaytsev, A. Potapov (2024)
Edaphobase 2.0: Advanced international data warehouse for collating and using soil biodiversity datasets. Applied Soil Ecology 204: 105710.

DOI: 10.1016/j.apsoil.2024.105710

Cherian Mathew, Anton Güntsch, Matthias Obst, Saverio Vicario, Robert Haines, Alan Williams, Yde de Jong, Carole Goble (2014)
A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control. Biodiversity Data Journal 2: e4221.

DOI: 10.3897/BDJ.2.e4221

Quentin J. Groom, Tim Adriaens, Peter Desmet, Annie Simpson, Aaike De Wever, Ioannis Bazos, Ana Cristina Cardoso, Lucinda Charles, Anastasia Christopoulou, Anna Gazda, Harry Helmisaari, Donald Hobern, Melanie Josefsson, Frances Lucy, Dragana Marisavljevic, Tomasz Oszako, Jan Pergl, Olivera Petrovic-Obradovic, Céline Prévot, Hans P. Ravn, Gareth Richards, Alain Roques, Helen E. Roy, Marie-Anne A. Rozenberg, Riccardo Scalera, Elena Tricarico, Teodora Trichkova, Diemer Vercayie, Argyro Zenetos, Sonia Vanderhoeven (2017)
Seven Recommendations to Make Your Invasive Alien Species Data More Useful. Frontiers in Applied Mathematics and Statistics 3: .

DOI: 10.3389/fams.2017.00013

Anton Güntsch, Jörg Overmann, Barbara Ebert, Aletta Bonn, Yvan Le Bras, Thore Engel, Knut Anders Hovstad, Dora Ann Lange Canhos, Peggy Newman, Elaine van Ommen Kloeke, Sophia Ratcliffe, Marianne le Roux, Vincent S Smith, Dagmar Triebel, David Fichtmueller, Katja Luther (2024)
National biodiversity data infrastructures: ten essential functions for science, policy, and practice. BioScience : .

DOI: 10.1093/biosci/biae109

Tilo Henning, Patrick Plitzner, Anton Güntsch, Walter G. Berendsohn, Andreas Müller, Norbert Kilian (2018)
Building compatible and dynamic character matrices – Current and future use of specimen-based character data. Botany Letters 165: 352.

DOI: 10.1080/23818107.2018.1452791

Alex Borisenko, Robert Young, Robert Hanner (2024)
A lab-centric, workflow-based data management system for environmental DNA research. Research Ideas and Outcomes 10: .

DOI: 10.3897/rio.10.e120483

Tom A. August, Oliver L. Pescott, Alexis Joly, Pierre Bonnet (2020)
AI Naturalists Might Hold the Key to Unlocking Biodiversity Data in Social Media Imagery. Patterns 1: 100116.

DOI: 10.1016/j.patter.2020.100116

Quentin J. Groom (2015)
Piecing together the biogeographic history ofChenopodium vulvariaL. using botanical literature and collections. PeerJ 3: e723.

DOI: 10.7717/peerj.723

Patricia Hernández-Ledesma, Walter G. Berendsohn, Thomas Borsch, Sabine Von Mering, Hossein Akhani, Salvador Arias, Idelfonso Castañeda-Noa, Urs Eggli, Roger Eriksson, Hilda Flores-Olvera, Susy Fuentes-Bazán, Gudrun Kadereit, Cornelia Klak, Nadja Korotkova, Reto Nyffeler, Gilberto Ocampo, Helga Ochoterena, Bengt Oxelman, Richard K. Rabeler, Adriana Sanchez, Boris O. Schlumpberger, Pertti Uotila (2015)
A taxonomic backbone for the global synthesis of species diversity in the angiosperm orderCaryophyllales. Willdenowia 45: 281.

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Cleverton Borba, Pedro Luiz Pizzigatti Correa (2015)
Metadata and Semantics Research. Chapter 10: 113.

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