Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae)

Rui-Wen Wu; Xiong-Jun Liu; Sa Wang; Kevin J. Roe; Shan Ouyang; Xiao-Ping Wu

doi:10.3897/zookeys.812.29908

André Gomes‐dos‐Santos, Elsa Froufe, John M. Pfeiffer, Nathan A. Johnson, Chase H. Smith, André M. Machado, L. Filipe C. Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V. Whelan, Ivan N. Bolotov, Ilya V. Vikhrev, Alexander V. Kondakov, Mohamed Ghamizi, Vincent Prié, Arthur E. Bogan, Manuel Lopes Lima (2023)
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). Molecular Ecology Resources 23: 1403.

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Ruiwen Wu, Lili Liu, Liping Zhang, Xiongjun Liu, Zhengkun Hu, Dandong Jin, Zepeng Zhang, Xiaoping Wu, Zhicai Xie, Zhengfei Li, Manuel Lopes‐Lima (2024)
Diversity, morphology, and phylogeny of freshwater mussels of the genus Nodularia (Bivalvia: Unionidae) from China, with descriptions of four new species. Zoologica Scripta 53: 594.

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Yu-Ting Dai, Qi-Xin Fan, Yi-Rong Chen, Xiao-Chen Huang, Shan Ouyang, Xiao-Ping Wu (2021)
Complete maternal mitochondrial genome of the freshwater mussel Cuneopsis celtiformis (Bivalvia: Unionidae). Mitochondrial DNA Part B 6: 2575.

DOI: 10.1080/23802359.2021.1960215

Yu-Ting Dai, Zhong-Guang Chen, Cheng-Lin Hu, Peng-Fei Ning, Shan Ouyang, Xiao-Chen Huang, Xiao-Ping Wu, Gonzalo Giribet (2024)
Taxonomic reassessment of Scabies (Bivalvia: Unionidae) species in China based on multilocus and mitogenomic phylogenetic analyses. Invertebrate Systematics 38: .

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Marianna Soroka (2020)
Doubly uniparental inheritance of mitochondrial DNA in freshwater mussels: History and status of the European species. Journal of Zoological Systematics and Evolutionary Research 58: 598.

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Yu‐Ting Dai, Zhong‐Guang Chen, Ke‐Jia Peng, Shan Ouyang, Xiao‐Chen Huang, Xiao‐Ping Wu (2024)
Revisiting the genus Pseudocuneopsis (Bivalvia, Unionidae): Morphology, mitochondrial phylogenomics, and the description of a new species. Zoologica Scripta 53: 323.

DOI: 10.1111/zsc.12647

Xiao‐Ping Wu, Yu‐Ting Dai, Nan Yin, Feng‐Yue Shu, Zhong‐Guang Chen, Liang Guo, Chun‐Hua Zhou, Shan Ouyang, Xiao‐Chen Huang (2022)
Mitogenomic phylogeny resolves Cuneopsis (Bivalvia: Unionidae) as polyphyletic: The description of two new genera and a new species. Zoologica Scripta 51: 173.

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Ruiwen Wu, Lili Liu, Liping Zhang, Junli Jia, Dandong Jin, Xiaoping Wu, Xiongjun Liu (2023)
New species of the genus Pseudocuneopsis Huang, Dai, Chen & Wu, 2022 (Bivalvia, Unionidae) from Guangxi Province, China. ZooKeys 1166: 261.

DOI: 10.3897/zookeys.1166.104150

Ruiwen Wu, Liping Zhang, Lili Liu, Junli Jia, Xiongjun Liu, Savel Daniels (2024)
Unraveling the Phylogenetic Relationships and Taxonomic Status of a Puzzling Freshwater Mussel Genus Inversidens (Bivalvia, Unionidae) through Multilocus Phylogeny and Mitochondrial Phylogenomics. Journal of Zoological Systematics and Evolutionary Research 2024: 1.

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Ruiwen Wu, Lili Liu, Liping Zhang, Arthur E. Bogan, Gengyun Niu, Dandong Jin, Xiaoping Wu, Xiongjun Liu, Gonzalo Giribet (2024)
Taxonomic revision of two species in the genus Ptychorhynchus Simpson, 1900 (Bivalvia: Unionidae: Gonideinae), with description of a new species. Invertebrate Systematics 38: .

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Ivan N. Bolotov, Alexander V. Kondakov, Ekaterina S. Konopleva, Ilya V. Vikhrev, Olga V. Aksenova, Andrey S. Aksenov, Yulia V. Bespalaya, Alexey V. Borovskoy, Petr P. Danilov, Gennady A. Dvoryankin, Mikhail Y. Gofarov, Mikhail B. Kabakov, Olga K. Klishko, Yulia S. Kolosova, Artem A. Lyubas, Alexander P. Novoselov, Dmitry M. Palatov, Grigory N. Savvinov, Nikolay M. Solomonov, Vitaly M. Spitsyn, Svetlana E. Sokolova, Alena A. Tomilova, Elsa Froufe, Arthur E. Bogan, Manuel Lopes-Lima, Alexander A. Makhrov, Maxim V. Vinarski (2020)
Integrative taxonomy, biogeography and conservation of freshwater mussels (Unionidae) in Russia. Scientific Reports 10: .

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Arthur E. Bogan, Van Tu Do, Elsa Froufe, Manuel Lopes-Lima (2023)
The Anodontini of Vietnam (Mollusca: Bivalvia: Unionidae: Unioninae) with the Description of a New Species. Diversity 15: 710.

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Wu Ruiwen, An Jianmei, Chen Ruru, Ouyang Shan, Wu Xiaoping (2021)
Taxonomy, phylogeny and evolution of freshwater mussels (Unionoida: Unionoidea) in China revealed by multilocus phylogenetic analyses and mitochondrial phylogenomics. Journal of Lake Sciences 33: 1788.

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Elsa Froufe, Ivan Bolotov, David C. Aldridge, Arthur E. Bogan, Sophie Breton, Han Ming Gan, Uthaiwan Kovitvadhi, Satit Kovitvadhi, Nicoletta Riccardi, Giulia Secci-Petretto, Ronaldo Sousa, Amilcar Teixeira, Simone Varandas, David Zanatta, Alexandra Zieritz, Miguel M. Fonseca, Manuel Lopes-Lima (2020)
Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution. Heredity 124: 182.

DOI: 10.1038/s41437-019-0242-y

Pengyu Chen, Danni Li, Xuxu Chen, Genfang Zhang, Shoubao Yang (2020)
Molecular identification and phylogenetic analysis of the mitogenome of Solenaia oleivora MG. Mitochondrial DNA Part B 5: 2796.

DOI: 10.1080/23802359.2020.1788435

Rui-Wen Wu, Xiong-Jun Liu, Shan Ouyang, Xiao-Ping Wu (2020)
Comparative Analyses of the Complete Mitochondrial Genomes of Three Lamprotula (Bivalvia: Unionidae) Species: Insight into the Shortcomings of Mitochondrial DNA for Recently Diverged Species Delimitation. Malacologia 63: 51.

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Annam Pavan-Kumar, Shubham Varshney, Sonal Suman, Rekha Das, A. Chaudhari, G. Krishna (2022)
Complete mitochondrial genome of freshwater pearl mussel Lamellidens marginalis (Lamarck, 1819) and its phylogenetic relation within unionidae family. Molecular Biology Reports 49: 9593.

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Zhong-Guang Chen, Yu-Ting Dai, Shan Ouyang, Xiao-Chen Huang, Xiao-Ping Wu (2023)
Unveiling the identity of Diaurora Cockerell, 1903 (Bivalvia, Unionidae): morphology, molecular phylogenetics, and the description of a new species. ZooKeys 1173: 131.

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Lili Liu, Liping Zhang, Dandong Jin, Haotian Wang, Xiongjun Liu, Ruiwen Wu (2023)
Molecular and morphological evidence reveals a hidden new taxon in the endemic genus Pseudocuneopsis (Bivalvia, Unionidae) from China. ZooKeys 1179: 219.

DOI: 10.3897/zookeys.1179.109817

Rui-Wen Wu, Kyung Seok Kim, Guang-Long Xie, Shan Ouyang, Xiao-Ping Wu (2020)
Phylogenetic position of Aculamprotula polysticta, comb. res. (Bivalvia : Unionidae) inferred from phylogenetic relationships in Unionida. Invertebrate Systematics 34: 192.

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Yohei Fukata, Masayuki Iigo (2020)
The complete mitochondrial genome of freshwater mussel Pronodularia japanensis (Gonideinae, Unionidae, Unionida) from Tochigi Prefecture, Japan, and its phylogenetic analysis. Mitochondrial DNA Part B 5: 1215.

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Ruiwen Wu, Lili Liu, Liping Zhang, Dandong Jin, Xiaoping Wu, Xiongjun Liu, Zhicai Xie, Zhengfei Li (2024)
Molecular phylogeny and comparative morphology reveal the species validity and systematic position of Lepidodesma (Bivalvia: Unionidae). Organisms Diversity & Evolution 24: 51.

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Ziquan Zhou, Yuxin Song, Zewen Zheng, Yunguang Liu, Haiyan Yao, Xiaozhen Rao, Gang Lin (2023)
The Complete Mitochondrial Genome and Phylogenetic Analysis of the Freshwater Shellfish Novaculina chinensis (Bivalvia: Pharidae). International Journal of Molecular Sciences 25: 67.

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