Brazilian obligatory subterranean fauna and threats to the hypogean environment

Abstract The subterranean environment harbors species that are not capable of establishing populations in the epigean environment, i.e., the obligatory subterranean species. These organisms live in a unique selective regime in permanent darkness and usually low food availability, high air humidity in terrestrial habitats, and low temperature range allied to other unique conditions related to lithologies and past climatic influences. The pressure to increase Brazil’s economic growth relies on agricultural/pastoral industries and exporting of raw materials such as iron, limestone, ethanol, soybean, cotton, and meat, as well as huge reservoir constructions to generate electricity. Mining (even on a small scale), agricultural expansion, and hydroelectric projects are extremely harmful to subterranean biodiversity, via the modification and even destruction of hypogean habitats. The Brazilian subterranean species were analyzed with respect to their distributions, presence on the IUCN Red List, and current and potential threats to hypogean habitats. A map and three lists are presented, one with the described obligatory subterranean species, one with undescribed taxa, and one with the current and potential threats to the hypogean environment. To date, 150 obligatory subterranean species have been recorded in Brazil, plus at least 156 undescribed troglomorphic taxa, totaling 306 Brazilian troglobites/obligatory cave fauna. We also analyzed the current and potential cave threats and the conservation actions that are underway to attempt to compensate for loss of these habitats. In according to the Brazilian legislation (Decree 6640) only caves of maximum relevance are fully protected. One strategy to protect the subterranean fauna of Brazil is the inclusion of these species in the IUCN Red List (one of attributes that determines maximum relevance for caves); however, one of the IUCN assumptions is that the taxa must be formally described. It is clear that the description and proposed protection of Brazilian subterranean biodiversity depends on more systematics studies.


Introduction
The most obvious intrinsic feature of subterranean environments is the absence of light, which results in energy restriction (Poulson andWhite 1969, Poulson andLavoie 2000). Furthermore, subterranean environments tend to be environmentally stable in terms of low temperature, high relative humidity, and complete darkness (Moore and Sullivan 1997). Consequently, few organisms are capable of effectively colonizing these environments (Barr 1968).
Obligatory subterranean species have evolved in isolation under particular selective conditions, such as complete darkness, low food quantity (with exceptions), and high and constant air humidity for terrestrial species. Obligatory subterranean species have accumulated specializations that are not present in their epigean relatives, which have culminated in exclusively subterranean populations that are no longer capable of colonizing the epigean realm (Trajano 2012).
The importance and fragility of hypogean environments was acknowledged when subterranean species were placed on the IUCN Red List by the environmental government agency in 2004 (IBAMA) and 2014 (ICMBio) (Machado et al. 2008, ICMBio 444 2014and ICMBio 445 2014. The inclusion of obligatory subterranean species in the IUCN Red List elevates caves to the maximum relevance level (out of four levels of relevance -maximum, high, median, and low), meaning that the cave habitat must be protected (Decree 6640 from November 7, 2008 (Brasil 2008), Normative Instruction [NI] number 2 from August 20, 2009; Normative Instruction [NI] number 2 from August 30, 2017). The biological attributes present in the Normative Instructions that elevates caves to maximum relevance are species included in official Red Lists; presence of endemic or relict troglobites; presence of rare troglobites; and occurrence of unique ecological interactions.
The hypogean environment is fragile and, thus, highly vulnerable to environmental changes; it typically presents high endemism and small population sizes with low restoration capacity, which implies that obligatory subterranean fauna is sensitive to habitat changes, such as chemical pollution, eutrophication, deforestation close to the outcrops and drainages, uncontrolled tourism, mining, dams, etc. (Poulson 1964, Culver andPipan 2009).
Extinction rates and disturbances caused by human activities are significant (Pimm et al. 1995), thus the knowledge of biodiversity becomes a fundamental tool to recognize threats to biodiversity. Financial resources for documenting biodiversity must be prioritized, as they are essential to establishing and developing best conservation policies (Brooks et al. 2006).
Knowledge of the geographical distribution of obligatory subterranean fauna in Brazil is fragmented compared to Europe and Asia, where a higher level of knowledge has been achieved (Botosaneanu 1986, Juberthie and Decu 2001, Deharveng et al. 2009, Brancelj et al. 2013). The first list of obligatory subterranean fauna of Brazil was published in the 1980s and comprised five areas (Dessen et al. 1980). Since then, these lists have been constantly reviewed (Trajano 1987, Trajano and Gnaspini-Netto 1991, Gnaspini and Trajano 1994, Pinto-da-Rocha 1995, Trajano and Bichuette 2010a. Herein we update and elaborate on the list of Brazilian obligatory subterranean fauna, mapping in detail the areas/regions with this fauna and its main threats.

Materials and methods
To construct the list, species descriptions, literature data, and sampling conducted by our group were utilized. The undescribed taxa were confirmed by specialists and are deposited in Brazilian collections (Museu Nacional do Rio do Janeiro/Universidade Federal do Rio de Janeiro, Instituto Butantan, Museu de Zoologia da Universidade de São Paulo). The information contained in two existing faunistic lists is expanded upon: one with the formally described obligatory subterranean fauna and the other containing the troglomorphic taxa (possible obligatory subterranean fauna detailed to as accurate taxonomic level as possible).
The purpose of the inclusion of undescribed troglomorphic taxa was to propose potential areas for conservation (since they are not included in the IUCN Red List). To avoid overestimation of taxa, we did not use data from environmental impact assessment reports.
The threats listed herein are those that directly disturb the hypogean environment and its fauna, such as small and large hydroelectrical projects, mining projects, deforestation, uncontrolled tourism, chemical pollution, and lowering of the water table due to extraction of water; and indirect threats such as roads, land conflicts and gas extraction. The main threats were listed for municipalities and for some Brazilian geomorphologic units.
The map was created on QuantumGis Essen 2.14 with shapefiles of South America and Brazil. Besides these, we used the shapefile of Brazilian karst areas, available at the CECAV/ICMBIO website. Circle size is proportional to the number of species occurring in each area and was plotted using Adobe Illustrator CS6.
To evaluate the addition of Brazilian subterranean species in the IUCN Red lists, we compared the number of species presented in the 2004 IUCN Red List (Machado et al. 2008) and the 2014 IUCN Red List (ICMBio 444 2014 andICMBio 445 2014). We distinguished between the species not rated in the IUCN Red List as "not reported" and "not included". "Not reported" refers to species that were not revised and "not included" are species that were revised and do not fit into any threat category: vulnerable (VU), endangered (EN), and critically endangered (CR). The term IUCN Red List used herein correspond to the Brazilian List of Threatened Fauna.

Results
Presently, Brazil has 150 described obligatory subterranean species, distributed over 12 states and located in different lithologies and geomorphologic groups ( Figure 1, Table 1). The majority of these species occur in limestone rocks (123 species), mainly owing to the vast size of limestone geomorphologic units and the higher sampling effort in this lithology. Even with the high number of impact reports (mainly mining) regarding iron ore lithologies, and the increase in studies and inventories over the last ten years after publication of Decree 6640, there has been few described species (twelve species). In the other lithologies, sandstone contains less described species than does iron ore (ten species); for quartzitic and marble lithologies, we recorded only two obligatory subterranean species, one for each. Besides, there are two hyporheic fishes, one from Pará State and another from Rondônia State.
At least 156 troglomorphic/stygomorphic taxa are undescribed ( Figure 1, Table 2), representing possible obligatory subterranean populations; these collections, deposited in different museums, await further taxonomic studies. Most of these specimens have not been identified to even a generic taxonomic level. In total, we listed approximately 306 obligatory and potentially obligatory subterranean species for Brazil (Tables 1 and  2). The Brazilian states with the highest number of species are Bahia (Serra do Ramalho karst area and São Desidério region, part of the Bambuí group, the Una-Irecê and Rio Pardo groups, the Canudos supergroup and the sandstone Chapada Diamantina; at least 90 obligatory subterranean species) and São Paulo (including part of the Açungui group, with at least 66 obligatory subterranean species) ( Figure 1). Considering the geomorphological units used here, the Bambui group is the richest with 100 obligatory subterranean species followed by the Açungui group with 73 obligatory subterranean species.
In total, eight threats are identified in the Bahia State (Table 3) and the majority of the caves in this State are outside conservation units (natural areas liable for protection by law owing to special features), the exception being in the Andaraí and Lençois regions, where the sandstone caves are recorded inside a conservation unit. For São Paulo State, the amount of threats are fewer (five, Table 3), but there is a concentration of them in areas that contain a high number of subterranean species, e.g., the Alto do Ribeira region -deforestation, land conflicts, pollution of subterranean drainage, small hydroelectric power-stations buildings (SHPS) and uncontrolled tourism.
The most common threat to the hypogean environment ( Figure 1, Table 3) was miscellaneous impacts, with historical threats (e.g., deforestation related to agriculture/ pastures and mining). For example, from the 29 impacted regions, deforestation for  Table 1  agricultural and/or pastures occurred in 17 (58.6 %); mining in 15 (51.7 %), uncontrolled tourism in six, as is also the case for pollution (20.7 % each); hydroelectric projects are present in five (17.2 %). Roads, land conflicts, gas extraction, and lowering of the water table are more widespread and are present in five regions (17.2 %). Caves included in conservation units are not fully protected -for example, the Açungui group in southeastern Brazil (where there are three State Parks) is under five different threats ( Figure 1, Table 3). Specifically, considering the Carajás region in North Brazil, we observed that only mining had an impact that would deplete the entire subterranean environment and lead to the total destruction of landscapes and caves (by mining), with the possible pollution of soil and drainage ways.
Considering the described subterranean species up to the end of 2003, only 33 were included in the Brazilian Red List of 2004 and another 30 species were "not re-        (Table 1).

Discussion
Considering the small number of Brazilian subterranean species recorded to date (150 species plus 156 troglomorphic taxa), we highlight the extreme difficulty in effectively protecting these species. Taxonomic impediment (Linnean shortfall -most of the species have not been described and catalogued (Brown and Lomolino 1998)) is reflected in our results, including specimens of known taxa that have been stored for over 20 years that still are undescribed (e.g., Pseudoscorpiones and Diplopoda). Thus, there is an urgent need for training new taxonomists, since they can accelerate the descriptions, conduct revisionary works, and then include obligatory subterranean species in the IUCN Red List.
As observed in other studies, São Paulo and Bahia States have the highest numbers of obligatory subterranean species, since the São Paulo cave fauna is the best studied in Brazil (Dessen et al. 1980, Trajano 1987, Trajano and Gnaspini-Netto 1991. Regarding the Bahia State, the extended limestone area associated with the current semi-arid climate conditions and the history of past climates has allowed many possibilities for faunistic isolations (Trajano 1995, Trajano et al. 2016. Indeed, it is in this state that we recorded the highest number of obligatory subterranean species occurring also in other kinds of previously neglected lithologies, such as sandstone . Publication of Decree 6640 and the corresponding Normative Instructions (2009,2017), which classifies caves in terms of relevance degrees, resulted in suppression of Brazilian cave listings. The NIs recommend that subterranean studies for environmental impact assessment reports (for commercial use of the cave/subterranean habitat, such as mining) include two cave sampling campaigns, one in the dry season and one in the rainy season. Highlighting conceptual problems of the NIs, Deharveng et al. (2009) show that even after 110 samplings in European karstic areas, obligatory subterranean species were found. Subterranean fauna inventories may be so inadequate that many species become extinct, before they are discovered and identified (Schneider andCulver 2004, Zagmajster et al. 2014). Thus, adequate sampling methods in different habitats are extremely relevant (Brancelj 2002. Poor subterranean studies represent another problem considering cave conservation. Trajano and Bichuette (2010b) and Trajano et al. (2012) stressed that inadequate sampling designs for evaluation of taxonomic and ecological characteristics leads to biased conclusions, and consequently compromises the conservation of these habitats.
According to Primack and Rodrigues (2001), some species are especially vulnerable to extinction and occur in the following categories: limited occurrence area; one or few known populations; small populations; declining populations; low population density; need huge habitats; large species; species that are not effective dispersers; seasonal migrants; low genetic variability; species that require special niches; species that occur in stable environments; permanent or temporary aggregations species; and hunting or consumed species. Among these fourteen categories, obligatory subterranean fauna fit at least eight of them (highlighted in italics), revealing the fragility and vulnerability of this fauna.
Although the extent and intensity of deforestation have been relatively high in our study area, reservoir construction for hydroelectric power stations and mining projects are worse threats because these can cause total destruction or irreversible impacts (total removal or flooding) of subterranean habitats, which could lead to fauna extinction as a result of physical destruction of the habitat (Culver 1986). According to Groombridge (1992), habitat loss is the most harmful threat to vertebrates as well as invertebrates, reinforcing the harm caused by the above activities, which can decimate cave fauna.
Recognition of the importance and fragility of subterranean environments by government agencies is becoming apparent with inclusion of obligatory subterranean fauna in threatened species lists. Gallão and Bichuette (2012) stressed the importance of the IUCN Red List for the protection of obligatory subterranean fauna in Brazil. When there is such inclusion, the cave is categorized as 'maximum totally avoiding cave destruction/suppression', thus, the IUCN Red List becomes one of the most important tools for protecting caves in Brazil. The IUCN Red List is also an important tool for obligatory subterranean species conservation, since it is one element (among others, see Trajano and Bichuette (2010b) for a review) that includes hypogean habitats as having maximum relevance according to the new Brazilian speleological laws (Decree 6640; see Trajano 2010, 2013, Trajano and Bichuette 2010b. Another relevant and critical point is that, with the inclusion of subterranean species in the IUCN Red List, the whole habitat is being protected. Despite caves with several subterranean species being existing conservation priorities, inclusion of a single subterranean species should be enough to protect the entire cave. However, it is important that we try to protect the entire system, i.e., the cave itself, the surroundings, and the hydrographic basin and/or landscape (Gallão and Bichuette 2012).
Pós-Graduação em Ecologia e Recusrsos Naturais (PPGERN/UFSCar) for infrastructure and part of financial support. Collections permit supported by Instituto Chico Mendes de Biodiversidade (ICMBio, 20165 and 28992). We thank Eleonora Trajano, José Salatiel and Douglas Zeppelini for contributions in early drafts of this work as well as one anonymous reviewer and Javier Alejandro Maldonado for their insightful comments and suggestions that improved the manuscript.