Research Article |
Corresponding author: Ralf Thiel ( ralf.thiel@uni-hamburg.de ) Academic editor: Nina Bogutskaya
© 2016 Ralf Thiel, Thomas Knebelsberger.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
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Accurate stock assessments for each of the dominant species of sand lances in the northeast Atlantic Ocean and adjacent areas are not available due to the lack of a reliable identification procedure; therefore, appropriate measures of fisheries management or conservation of sand lances cannot be implemented. In this study, detailed morphological and molecular features are assessed to discriminate between four species of sand lances belonging to the genera Ammodytes and Hyperoplus.
Morphological characters described by earlier authors as useful for identification of the genera are confirmed, and two additional distinguishing characters are added. A combination of the following morphological characters is recommended to distinguish between the genera Hyperoplus and Ammodytes: the protrusibility of the premaxillae, the presence of hooked ends of the prevomer, the number of dermal plicae, and the pectoral-fin length as a percentage of the standard length. The discriminant function analysis revealed that morphometric data are not very useful to distinguish the species of each of the two genera. The following meristic characters improve the separation of H. lanceolatus from H. immaculatus: the number of lower arch gill rakers, total number of gill rakers, numbers of caudal vertebrae and total vertebrae, and numbers of dorsal-fin and anal-fin rays. It is confirmed that A. tobianus differs from A. marinus by its belly scales that are organised in tight chevrons, scales which are present over the musculature at the base of the caudal fin, as well as by the lower numbers of dermal plicae, dorsal-fin rays, and total vertebrae.
In contrast to the morphological data, mitochondrial COI sequences (DNA barcodes) failed to separate unambiguously the four investigated species. Ammodytes tobianus and H. lanceolatus showed an overlap between intraspecific and interspecific K2P genetic distances and cannot be reliably distinguished using the common DNA barcoding approach. Ammodytes marinus and H. immaculatus exhibited gaps between intraspecific and interspecific K2P distances of 2.73 and 3.34% respectively, indicating that their DNA barcodes can be used for species identification. As an alternative, short nuclear Rhodopsin sequences were analysed and one diagnostic character was found for each of the species A. marinus, H. lanceolatus, and H. immaculatus. Ammodytes tobianus can be characterised by the lack of species-specific mutations when compared to the other three species. In contrast to COI, the short nuclear sequences represent a useful alternative for rapid species identification whenever an examination of morphological characters is not available.
Ammodytes , COI , DNA barcoding, Hyperoplus , meristic characters, mitochondrial DNA, morphology, morphometrics, northeast Atlantic, nuclear gene, Rhodopsin, Sand lances, species identification
Sand lances of the family Ammodytidae are small fishes that live primarily in marine and adjacent brackish waters with sandy substrates of the northern hemisphere, where they are able to quickly dive into the substrate to escape predation (
The family Ammodytidae comprises 31 species in seven genera (e.g.
In identification keys these two genera are often distinguished by showing clear protrusible premaxillae and no vomerine teeth (Ammodytes) or no clear protrusible premaxillae and a pair of vomerine teeth (Hyperoplus, e.g.
However, the distinguishing features mentioned above are not easy to observe for the untrained eye when comparative material of different species is not available. Furthermore, an accurate species identification, especially of juvenile individuals, is difficult and even sub-adult and adult sand lances are difficult to identify (
The difficult identification of sand lance species contributed to the current situation that accurate stock assessments are not available separately for each of the species in the North Sea and adjacent areas (see
Molecular-based identification methods of fish species have been developed over the last decades (for an overview see
For fish, the species discrimination success of DNA barcoding was demonstrated in many studies including freshwater as well as marine faunas from many regions all over the world (e.g.
For the North Sea and adjacent areas, two DNA barcoding studies revealed successful differentiation of all investigated species (
One of these studies already provided DNA barcodes for the two sand lance species A. marinus and H. immaculatus and demonstrated a clear separation of these two species (
This paper presents the first comprehensive study combining morphological and molecular methods for the discrimination of four species of sand lances belonging to the genera Ammodytes and Hyperoplus occurring in the northeast Atlantic Ocean and adjacent waters. The suitability of two morphological types of parameters (meristic characters and morphometric measurements) and two genetic approaches (mitochondrial COI (DNA barcoding region) and partial nuclear Rhodopsin DNA sequences) for accurate species identification is examined. A detailed and accurate species identification matrix is presented, based on the integration of morphological and molecular traits.
In this study 85 specimens representing two species of genus Ammodytes and two species of genus Hyperoplus were sampled from the North and the Baltic Seas (Suppl. material
Meristic parameters (Table
Data of estimated morphological characters of four species of sand lances of the genera Ammodytes and Hyperoplus. If possible, each meristic character and morphometric measurement is presented with its range (before the semicolon), mean value with standard deviation and the number of specimens analysed (in brackets). Morphometric measurements are given as proportion of SL.
Species | Ammodytes marinus | Ammodytes tobianus | Hyperoplus immaculatus | Hyperoplus lanceolatus |
---|---|---|---|---|
Meristic characters | ||||
Dermal plicae (DP) | 140–150; 143.1 ± 2.6 (24) | 123–135; 128.5 ± 3.0 (21) | 179–196; 187.8 ± 5.4 (8) | 169–194; 182.6 ± 6.4 (29) |
Dorsal-fin rays (DR) | 56–62; 59.1 ± 1.4 (27) | 51–55; 52.8 ± 1.1 (21) | 59–61; 60.1 ± 0.6 (8) | 54–57; 55.9 ± 0.8 (29) |
Anal-fin rays (AR) | 28–31; 29.5 ± 0.8 (27) | 25–30; 27.8 ± 1.3 (21) | 31–32; 31.8 ± 0.5 (8) | 28–30; 29.1 ± 0.8 (29) |
Pectoral-fin rays (PR) | 12–15; 13.6 ± 0.6 (26) | 12–13; 13.0 ± 0.2 (21) | 13–15; 14.1 ± 0.6 (8) | 13–14; 13.5 ± 0.5 (29) |
Principal caudal-fin rays (CR) | 15 ± 0 (27) | 15 ± 0 (21) | 15 ± 0 (8) | 15 ± 0 (29) |
Upper arch gill rakers (UR) | 5–6; 5.0 ± 0.2 (24) | 5 ± 0 (21) | 5 ± 0 (8) | 5 ± 0 (29) |
Lower arch gill rakers (LR) | 18–20; 18.6 ± 0.8 (24) | 20 ± 0 (21) | 23–25; 24.3 ± 0.7 (8) | 20–22; 20.7 ± 0.8 (29) |
Total gill rakers (GR) | 23–26; 23.6 ± 0.9 (24) | 25 ± 0 (21) | 28–30; 29.1 ± 0.6 (8) | 25–27; 25.7 ± 0.8 (29) |
Precaudal vertebrae (PV) | 42–44; 42.9 ± 0.7 (27) | 36–41; 38.1 ± 1.4 (21) | 42–43; 42.9 ± 0.4 (8) | 38–42; 40.3 ± 0.8 (29) |
Caudal vertebrae (CV) | 26–28; 26.7 ± 0.5 (27) | 24–26; 25.1 ± 0.6 (21) | 29–30; 29.5 ± 0.5 (8) | 25–28; 26.5 ± 0.7 (29) |
Total vertebrae (TV) | 68–71; 69.6 ± 0.9 (27) | 60–66; 63.2 ± 1.4 (21) | 72–73; 72.4 ± 0.5 (8) | 65–68; 66.8 ± 0.8 (29) |
Margins of dorsal and anal fins straight with rays of equal length (MDAS) | yes (27) | yes (21) | yes (8) | yes (29) |
Body covered in oblique plicae bearing the scales (BCOP) | yes (27) | yes (21) | yes (8) | yes (29) |
Premaxillae clearly protrusible (PCP) | yes (27) | yes (21) | no (8) | no (29) |
Two vomerine teeth present (VTP) | no (27) | no (21) | yes (8) | yes (29) |
Conspicuous dark spot on either side of snout (DSSS) | no (27) | no (21) | no (8) | yes (29) |
Belly scales in tight chevrons (BSTC) | no (27) | yes (21) | yes (8) | not clearly detectable (29) |
Scales over musculature at base of caudal fin (SBCF) | no (27) | yes (21) | yes (8) | yes (29) |
Scales present in the midline anterior to dorsal fin (SADF) | no (27) | yes (21) | yes (8) | yes (29) |
Morphometric measurements | ||||
Standard length (SL, mm) | 61.2–193; 136.7 ± 29.7 (27) | 121.5–146.4; 134.1 ± 7.7 (21) | 220.4–270.1; 251.4 ± 15.0 (8) | 165.0–291.0; 219.3 ± 32.7 (29) |
Percentage standard length | ||||
Body depth at dorsal-fin origin (BDD) | 5.9–11.1; 9.1 ± 1.3 (26) | 8.3–11.9; 9.5 ± 0.8 (21) | 5.8–7.9; 6.8 ± 0.9 (8) | 5.6–8.8; 7.0 ± 0.9 (29) |
Body depth at anal-fin origin (BDA) | 4.9–10.1; 8.1 ± 1.2 (27) | 7.3–10.4; 9.4 ± 0.8 (20) | 6.6–8.2; 7.5 ± 0.5 (8) | 5.2–8.0; 6.7 ± 0.6 (28) |
Body with at dorsal-fin origin (BWD) | 4.1–6.4; 5.3 ± 0.7 (26) | 4.0–7.6; 6.0 ± 0.9 (21) | 5.6–8.2; 6.5 ± 0.8 (8) | 4.3–7.2; 5.4 ± 0.8 (29) |
Head length (HL) | 17.6–22.6; 20.0 ± 1.1 (26) | 18.4–21.4; 19.6 ± 0.8 (21) | 18.3–20.2; 19.4 ± 0.7 (8) | 20.2–23.0; 21.7 ± 0.6 (29) |
Snout length (SNL) | 5.1–6.1; 5.7 ± 0.3 (26) | 5.1–6.0; 5.4 ± 0.3 (21) | 6.0–6.3; 6.1 ± 0.1 (8) | 5.0–8.1; 7.2 ± 0.5 (29) |
Orbit diameter (OD) | 2.7–4.4; 3.2 ± 0.5 (26) | 2.6–3.5; 3.0 ± 0.3 (21) | 1.9–2.5; 2.3 ± 0.2 (8) | 2.0–4.5; 2.5 ± 0.5 (29) |
Interorbital width (IW) | 2.0–3.5; 2.4 ± 0.3 (27) | 2.1–2.9; 2.4 ± 0.2 (21) | 2.8–3.6; 3.2 ± 0.3 (8) | 2.7–3.7; 3.3 ± 0.3 (29) |
Upper jaw length (UJL) | 4.6–10.3; 6.7 ± 1.0 (26) | 5.4–7.0; 6.4 ± 0.4 (21) | 4.7–6.0; 5.3 ± 0.4 (8) | 6.5–8.1; 7.1 ± 0.3 (29) |
Caudal peduncle depth (CPD) | 2.2 -2.9; 2.6 ± 0.2 (26) | 2.8–3.2; 3.0 ± 0.1 (21) | 2.5–2.9; 2.7 ± 0.1 (8) | 2.3–2.8; 2.5 ± 0.1 (29) |
Caudal peduncle length (CPL) | 3.2–5.6; 4.1 ± 0.5 (27) | 3.5–5.4; 4.3 ± 0.5 (21) | 4.4–6.4; 4.8 ± 0.7 (8) | 3.9–5.7; 4.9 ± 0.4 (29) |
Prepectoral length (PPL) | 16.6–21.7; 18.6 ± 1.0 (25) | 14.8–20.4; 18.6 ± 1.1 (21) | 17.9–18.7; 18.4 ± 0.3 (8) | 19.5–22.1; 20.8 ± 0.7 (29) |
Predorsal length (PDL) | 23.5–28.1; 25.3 ± 1.0 (26) | 24.0–27.3; 25.4 ± 1.0 (21) | 26.1–27.6; 26.6 ± 0.5 (8) | 25.7–30.4; 27.9 ± 1.0 (29) |
Preanal length (PAL) | 63.4–66.8; 64.9 ± 1.1 (27) | 60.3–67.0; 63.7 ± 1.9 (21) | 60.2–64.1; 62.8 ± 1.4 (8) | 45.4–70.6; 64.9 ± 4.1 (29) |
Pectoral-fin length (PFL) | 8.6–11.9; 9.9 ± 0.7 (25) | 9.4–11.4; 10.4 ± 0.5 (21) | 7.2–8.2; 7.7 ± 0.4 (8) | 6.7–8.7; 7.7 ± 0.6 (28) |
Dorsal-fin base length (DFBL) | 66.6–72.0; 69.8 ± 1.4 (27) | 66.9–70.8; 69.2 ± 1.1 (21) | 68.1–69.8; 69.1 ± 0.7 (8) | 65.5–69.2; 67.4 ± 1.1 (29) |
Anal-fin base length (AFBL) | 28.9–32.4; 30.5 ± 1.0 (27) | 26.7–33.4; 31.6 ± 1.9 (21) | 30.5–33.8; 32.4 ± 1.2 (8) | 28.4–32.1; 29.8 ± 1.0 (29) |
Caudal-fin length (CFL) | 8.3–11.5; 10.1 ± 0.7 (26) | 9.0–12.0; 10.3 ± 0.7 (21) | 8.5–9.7; 8.9 ± 0.4 (8) | 7.6–10.3; 8.9 ± 0.7 (28) |
Dorsal-fin height (DFH) | 3.6–6.0; 4.7 ± 0.7 (27) | 3.9–6.1; 4.8 ± 0.6 (21) | 3.4–4.6; 4.1 ± 0.4 (8) | 2.7–5.7; 3.9 ± 0.6 (29) |
Anal-fin height (AFH) | 2.6–6.2; 4.7 ± 0.8 (27) | 3.4–5.8; 4.8 ± 0.5 (21) | 2.5–4.6; 3.9 ± 0.7 (8) | 2.7–5.6; 4.1 ± 0.6 (29) |
Morphometric measurements (Table
Standardised coefficients of the first three discriminant functions (DF1, DF2, DF3) separating the four species of Ammodytes and Hyperoplus based on meristic characters. In bold, characters with the greatest weight in DF1 and DF2.
Meristic characters | DF1 | DF2 | DF3 |
---|---|---|---|
DP | 0.884 | -0.320 | -0.444 |
DR | 0.056 | 0.664 | -0.096 |
AR | 0.112 | -0.155 | 0.159 |
PR | 0.015 | 0.079 | -0.172 |
UR | -0.428 | -0.135 | -0.289 |
LR | 0.432 | -0.140 | 0.891 |
PV | -0.017 | 0.523 | -0.061 |
CV | 0.426 | 0.516 | 0.471 |
Percentage of explained variance | 71.438 | 20.317 | 8.245 |
Eigenvalue | 40.392 | 11.488 | 4.662 |
Cumulative variance in % | 71.438 | 91.755 | 100.00 |
All morphological data were statistically processed, involving ranges, means, and standard deviations. Morphological data of all specimens that had a complete suite of meristic and morphometric character data were used to conduct two multiple discriminant function analyses (DFA) to determine if the four species of sand lances could be differentiated based on meristic and/or morphometric parameters using XLSTAT (version 2013.0.04, Addinsoft), a statistical analysis add-in for Microsoft Excel®. DFA was used to demonstrate the degree of separation in multivariate space defined by the main patterns of morphological variation among species which is described via the discriminant functions. It also shows which character contributes more to the differentiation. The standardised discriminant function coefficients represent the contributions of every variable to the discriminatory power of the function. Hence, the larger the standardised coefficient, the larger the weight of the variable in the function. Both discriminant analyses were conducted for 76 individuals (22 A. marinus, 20 A. tobianus, 8 H. immaculatus, 26 H. lanceolatus). Morphological variables without any variation (e.g. principal caudal-fin rays (CR)), variables, where other variables are included (e.g. total vertebrae (TV)) and qualitative variables (e.g. premaxillae clearly protrusible (PCP)) were excluded from the DFA procedures. The first DFA was performed for the following eight quantitative meristic characters: dermal plicae, dorsal-fin rays, anal-fin rays, pectoral-fin rays, upper arch gill rakers, lower arch gill rakers, precaudal vertebrae, and caudal vertebrae. The second DFA was conducted for the following 19 morphometric parameters: body depth at dorsal-fin origin, body depth at anal-fin origin, body width at dorsal-fin origin, head length, snout length, orbit diameter, interorbital width, upper jaw length, caudal peduncle depth, caudal peduncle length, prepectoral length, predorsal length, preanal length, pectoral-fin length, dorsal-fin base length, anal-fin base length, caudal-fin length, dorsal-fin height, and anal-fin height.
Genomic DNA was extracted at the DZMB using the Qiagen DNeasy Blood and Tissue Kit for single columns as described by
Forward and reverse sequences of COI and Rhodpsin were assembled and edited using Geneious (version 7.1.9. http://www.geneious.com). Consensus sequences were submitted to GenBank (for accession numbers see Suppl. material
On BOLD, DNA barcodes were automatically assigned to operational taxonomic units (OTUs), generated through Refined Single Linkage (RESL) analyses (
Furthermore, BOLD’s “Diagnostic Characters” sequence analysis tool was applied to the COI dataset choosing MUSCLE (
Meristic characters and morphometric measurements of the four examined species of sand lances are given in Table
The data of the present study confirmed that the two genera of Ammodytes and Hyperoplus can be distinguished by qualitative meristic characters, i.e. by having a clear protrusible premaxillae (PCP) and no vomerine teeth (VTP) (Ammodytes) or no clear protrusible premaxillae and two vomerine teeth (Hyperoplus) (Table
Hyperoplus lanceolatus can be separated from H. immaculatus by the presence of a conspicuous dark spot on either side of snout (DSSS) which is lacking in H. immaculatus (Table
Ammodytes tobianus can be distinguished from A. marinus by having belly scales that are organised in tight chevrons (BSTC) and having scales present over the musculature at the base of the caudal fin (SBCF) and in the midline anterior to dorsal fin (SADF), whereas these characters are not present in A. marinus (Table
DFA based on meristic characters provided three significant functions (Box-Test with χ2 = 790.916 and p<0.0001; Wilks´ lambda = 0.0003 and p<0.0001). These three functions explain 100% of the total variation in the data. The first two functions explain 91,755% of the total variation in the data (Table
Individual specimens are projected onto the first two discriminant functions in Figure
From the standardised coefficients (Table
The second discriminant function accounts for 20.317% of total variation. Ammodytes tobianus and A. marinus are clearly and the species pairs of A. tobianus and H. immaculatus, A. marinus and H. lanceolatus as well as H. immaculatus and H. lanceolatus are to a lesser extent discriminated by this function. Ammodytes tobianus and H. lanceolatus and A. marinus and H. immaculatus cannot be clearly separated by the second discriminant function. The contrasts between the numbers of dorsal-fin rays (DR) and the numbers of precaudal vertebrae (PV) of the species are mainly responsible for this discrimination. DR is lowest in A. tobianus and highest in H. immaculatus (Table
Three significant DFA functions were estimated based on morphometric measurements (Box-Test with χ2 = 944.979 and p < 0.0001; Wilks´ lambda = 0.003 and p < 0.0001). Together these functions explain 100% of the total variation in the data. The first two functions explain 93.144% of the total variation in the data (Table
Standardised coefficients of the first three discriminant functions (DF1, DF2, DF3) separating the four species of Ammodytes and Hyperoplus based on morphometric measurements. In bold, characters with the greatest weight in DF1 and DF2.
Morphometric measurements | DF1 | DF2 | DF3 |
---|---|---|---|
BDD | -0.135 | -0.184 | 0.085 |
BDA | -0.178 | -0.038 | -0.208 |
BWD | -0.054 | 0.317 | 0.222 |
HL | 0.290 | -0.084 | -0.603 |
SNL | 0.380 | -0.040 | -0.045 |
OD | -0.231 | 0.078 | 0.497 |
IW | 0.198 | 0.164 | 0.237 |
UJL | -0.034 | -0.868 | -0.260 |
CPD | -0.228 | 0.542 | -0.473 |
CPL | 0.112 | 0.418 | -0.147 |
PPL | 0.204 | 0.101 | -0.076 |
PDL | 0.140 | 0.251 | 0.143 |
PAL | -0.020 | 0.008 | 0.103 |
PFL | -0.612 | -0.280 | -0.528 |
DFBL | -0.060 | 0.104 | 0.551 |
AFBL | 0.098 | 0.429 | -0.208 |
CFL | -0.148 | 0.520 | 0.390 |
DFH | -0.078 | -0.125 | 0.223 |
AFH | 0.136 | -0.333 | -0.259 |
Percentage of explained variance | 78.576 | 14.568 | 6.856 |
Eigenvalue | 20.555 | 3.811 | 1.794 |
Cumulative variance in % | 78.576 | 93.144 | 100.00 |
Figure
The two measurement characters that have the greatest weight on the first discriminant function are pectoral-fin length (PFL) and the snout length (SNL) (Table
The second discriminant function accounts for 14.568% of total variation. Especially the species within the genera Ammodytes and Hyperoplus, namely A. tobianus and A. marinus as well as H. immaculatus and H. lanceolatus are separated by this function (Figure
Upper jaw length (UJL) and caudal peduncle depth (CPD) are the two measurements, for which no sexual dimorphism is known, and that have the greatest weight on the second discriminant function (Table
Mitochondrial DNA barcodes were obtained for 70 specimens belonging to four species of the family Ammodytidae investigated in this study (Suppl. material
The NJ analysis of the K2P distances revealed well supported monophyletic clusters for the species A. marinus and H. immaculatus with bootstrap values of 97 and 100, respectively (Figure
NJ dendrogram based on K2P pairwise genetic distances. Values at nodes indicate the result of the bootstrap test (10.000 pseudo replicates). Only values ≥ 50 are shown. For Ammodytes tobianus (grey box) and Hyperoplus lanceolatus all analysed individuals are shown. In case of Ammodytes marinus and Hyperoplus immaculatus the number of specimens is given in brackets.
Minimum and maximum intraspecific genetic K2P distances (%) for each species including mean and standard deviation. The barcoding gap indicates the difference between the maximum intraspecific and the minimum interspecific (nearest neighbour) genetic distance. Additionally K2P genetic distances are given in brackets, if they differ from p-distances.
Species | Specimens | Mean Distance | SD* | Minimum Distance | Maximum Distance | Nearest Neighbor | Distance to Nearest Neighbor | Barcoding Gap |
---|---|---|---|---|---|---|---|---|
A. marinus | 27 | 0.24 | 0.19 | 0.00 | 0.77 | H. immaculatus | 3.50 | 2.73 |
A. tobianus | 6 | 0.15 | 0.01 | 0.00 | 0.15 | H. lanceolatus | 0.15 | no gap |
H. lanceolatus | 29 | 0.22 | 0.15 | 0.00 | 0.62 | A. tobianus | 0.15 | no gap |
H. immaculatus | 8 | 0.07 | 0.08 | 0.00 | 0.16 | A. marinus | 3.50 | 3.34 |
The BIN discordance report tool on BOLD assigned three different BIN numbers to the 70 COI haplotypes. The BINBOLD:ACF3320 was found to be “concordant” and exclusively comprised 32 specimens of the species Ammodytes marinus, of which five individuals were not provided by this study. The “discordant” BINBOLD:AAC5676 comprised 57 specimens, 14 identified as Ammodytes tobianus and 43 as Hyperoplus lanceolatus. From the former species eight specimens and from the latter 14 specimens were not provided by our study but also support the findings of this study. The third BINBOLD:AAJ2299 was also specified as discordant and comprised ten specimens, eight (in our study) identified as Hyperoplus immaculatus and two identified as Ammodytes marinus. The two A. marinus entries may represent cases of misidentification as 32 A. marinus individuals were grouped together in BINBOLD:ACF3320.
The analysis revealed four diagnostic characters for the species A. marinus and 16 for H. immaculatus (results not shown). The two species A. tobianus and H. lanceolatus did not show any diagnostic characters on species level. Consequently, only two of the four investigated species can be identified using diagnostic characters on the basis of COI barcode sequences.
The nc Rhodopsin sequence alignment showed a length of 464 bp after primer trimming. The complete fragment could be amplified and sequenced for all 70 specimens used for the mt DNA barcode analysis. The number of variable sites was very low and the alignment could be easily evaluated by eye. One diagnostic character was found for each of the species A. marinus (Table
Variable sites identified for the nc Rhodopsin gene fragment sequence alignment. Bases in bold indicate species specific diagnostic characters. The three underlined bases are distinctive for A. tobianus.
Nucleotide position | ||||
---|---|---|---|---|
Species | Specimens | 82 | 433 | 460 |
A. marinus | 27 | C | G | C |
A. tobianus | 7* | C | G | A |
H. lanceolatus | 30** | T | G | A |
H. immaculatus | 8 | C | A | A |
The primary objective of this study was to contribute to robust genera- and species-level identifications, combining morphological and molecular methods, of four closely related species of sand lances of the genera Ammodytes and Hyperoplus occurring in the northeast Atlantic Ocean and adjacent waters.
The detailed morphological analyses confirmed findings described by other authors (e.g.
Subsequently,
This study adds three more characters helpful in distinguishing between both genera of sand lances based on the four species considered. Firstly, the number of dermal plicae is significantly higher in Hyperoplus compared to Ammodytes. Secondly, Hyperoplus has a lower pectoral-fin length in relation to standard length (SL) than Ammodytes.
As indicated by the results of discriminant function analysis, morphometric measurements seem not to be characters of the first choice to distinguish the two species of each of the two genera, since they could not be discriminated by the first discriminant function.
According to the results presented here, six meristic characters (the number of lower arch gill rakers, the total number of gill rakers, the number of caudal vertebrae, the number of total vertebrae, and the number of dorsal-fin and anal-fin rays) are more useful than morphometric measurements to distinguish between H. immaculatus and H. lanceolatus. The use of these additional characters would support and refine the current methods to separate H. lanceolatus from H. immaculatus. Searching only for the occurrence of a conspicuous dark spot on either side of snout below anterior nostril could be unsuccessful in the case of preserved specimens.
In the case of A. tobianus and A. marinus, these results support the information on useful distinguishing characters between both species reported for instance by
The successful discrimination of the two sand lance species A. marinus and H. immaculatus by DNA barcoding was already demonstrated by
Surprisingly, the two species A. tobianus and H. lanceolatus belonging to different genera cannot be clearly separated on the basis of genetic distances, as the lowest distance (K2P) between these two species was only 0.15% and within species variation was found to be 0.15 and 0.62% respectively. In the NJ dendrogram both species appeared together in a well supported clade and were also found within the same BIN cluster when analysed together with data on BOLD. However, A. tobianus and H. lanceolatus do not show haplotype sharing, as A. tobianus sequences appeared together in a separate cluster. The two species may therefore be separated by applying tree-based approaches like GMYC or model-based ones like ABGD.
In contrast to the barcoding results, both genera of Ammodytes and Hyperoplus can undoubtedly be separated by morphological character traits as discussed above. DNA barcoding failure between closely related congeneric species is usually more common than between species belonging to different genera (e.g.
In the present work, inadequate taxonomy, erroneous species designation or identification error can be excluded as possible explanation for DNA barcoding failure in unambiguously separating A. tobianus from H. lanceolatus. In addition, true biological phenomena such as the occurrence of hybridisation or incomplete lineage sorting seem to be unlikely, as no interspecific haplotype sharing was found. In cases where mitochondrial COI sequences fail to distinguish between species, the application of nuclear DNA markers may be tested alternatively. In fish, the nuclear Rhodopsin gene has already been proposed as supplementary marker in order to identify species (
Our study clearly demonstrated that nuclear Rhodopsin constitutes a preferable alternative marker to discriminate successfully between the four investigated species of sand lances.
Finally, it should be pointed out that the present results are not meant to provide a phylogenetic reconstruction with regard to the genera Ammodytes and Hyperoplus, since the latter requires a more detailed study of more species of both genera, as well as other members of the group. However, accurate identification of these sand lance species is the basis to assess the status of their stocks and to implement appropriate measures of fisheries management or conservation, and as such, the aim of successfully identifying the NE Atlantic species has been accomplished.
With this study a robust genus- and species-level discrimination of the four most abundant and closely related species of sand lances of the genera Ammodytes and Hyperoplus in the NE Atlantic Ocean and adjacent waters has been provided. It is expected that these results will facilitate the accurate identification of A. marinus, A. tobianus, H. immaculatus, and H. lanceolatus combining morphological and molecular methods.
We thank the Thünen Institute of Sea Fisheries for supporting sampling regimes. Many thanks go also to Irina Eidus, Elena Hauten, Renate Thiel, and Laura Wichmann for their helpful support during this study. The molecular work was funded by the Federal Ministry of Education and Research (Grant No. 03F0499A) and the Land Niedersachsen. A part of the A. tobianus specimen was sampled in the framework of a study which was assigned by the German Federal Agency for Nature Conservation and sponsored by the Federal Ministry for the Environment, Nature Conservation and Nuclear Safety under grant number 80385220.
Table S1
Data type: specimen data
Explanation note: Supplementary metadata for specimens used for both morphological and genetic analyses; Museum and Sample IDs are specimen identifiers, BOLD Process IDs are unique codes automatically generated for each record on BOLD, GenBank Accession NOs represent sequence identifiers.
Table S2
Data type: specimen data
Explanation note: Museum IDs and collection data for specimens of Ammodytes tobianus used for morphological analyses only.