Research Article |
Corresponding author: R. Alexander Pyron ( rpyron@colubroid.org ) Academic editor: Zoltan T Nagy
© 2015 R. Alexander Pyron, Juan M. Guayasamin, Nicolás Peñafiel, Lucas Bustamante, Alejandro Arteaga.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Pyron RA, Guayasamin JM, Peñafiel N, Bustamante L, Arteaga A (2015) Systematics of Nothopsini (Serpentes, Dipsadidae), with a new species of Synophis from the Pacific Andean slopes of southwestern Ecuador. ZooKeys 541: 109-147. https://doi.org/10.3897/zookeys.541.6058
|
Within Dipsadinae, some recent authors have recognized a tribe Nothopsini containing the genera Diaphorolepis, Emmochliophis, Nothopsis, Synophis, and Xenopholis, on the basis of a number of putative morphological synapomorphies. However, molecular results suggest that Nothopsis, Synophis, and Xenopholis do not form a monophyletic group, while the remaining taxa are unsampled in recent molecular phylogenies. Here, DNA-sequence data for some Diaphorolepis and Synophis species are provided for the first time, as well as additional new sequences for Nothopsis and some Synophis species. Including these and other existing data for nothopsine species, previous studies showing that Nothopsini is not a natural group are corroborated. Nothopsini Cope, 1871 is restricted to Nothopsis. Diaphorolepidini Jenner, 1981 is resurrected and re-delimited to include only Diaphorolepis, Emmochliophis, and Synophis. Finally, Xenopholis remains Dipsadinaeincertae sedis. Known material of Diaphorolepidini is reviewed to generate revised and expanded descriptions and diagnoses at the tribe, genus, and species level. Numerous cryptic species are likely present in S. bicolor and S. lasallei. Finally, a new population from the low-elevation cloud forests of SW Ecuador is reported upon, which is genetically and morphologically distinct from all other species, that is here named Synophis zaheri sp. n.
Serpentes , Dipsadinae , Nothopsini , Diaphorolepis , Synophis
Within Dipsadinae (sensu
Most subsequent studies have considered Nothopsini to contain only Diaphorolepis, Emmochliophis, Nothopsis, Synophis, and Xenopholis (see
Thus, the tribe Nothopsini does not appear to represent a natural group, despite the putative morphological synapomorphies uniting the taxa listed above (
However, Diaphorolepis and Emmochliophis have still not been sampled in any molecular phylogeny, and it is thus unclear where their phylogenetic affinities lie. Morphological evidence suggests that these two genera form a clade with Synophis (see
Work in Ecuador was carried out under permit number MAE-DNB-CM-2015-0017. We obtained tissue samples of Diaphorolepis wagneri (3 specimens), Synophis bicolor (3), S. calamitus (1), S. lasallei (1), a new Synophis species (2), and Nothopsis rugosus (1), via fieldwork in Ecuador. The specimens are deposited at the Museo de Zoología at the Universidad Tecnológica Indoamérica (MZUTI; Tables
Morphometric data for specimens of Diaphorolepidini species examined or from literature. Codes are: MT=maxillary teeth; IL=infralabials; SL=supralabials; PO=postoculars; V=ventrals; SC=subcaudals; D1-3=dorsal scale rows at neck, midbody, and vent; SVL=snout-vent length (mm); TL=tail length (mm). Museum codes are given in
Species | Collection | MT | IL | SL | PO | V | SC | D1 | D2 | D3 | SVL | TL | Sex |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diaphorolepis laevis |
|
16 | 10 | 8/9 | 2 | 157 | 84 | 19 | 19 | 17 | 350 | 145 | - |
Diaphorolepis wagneri |
|
23 | 10 | 8 | 3 | 194 | 138 | 21 | 19 | 17 | 290 | 153 | M |
Diaphorolepis wagneri |
|
25 | 10 | 9 | 2 | 197 | 133 | 21 | 19 | 17 | 355 | 187 | F |
Diaphorolepis wagneri | KU 75682 | 24 | 10 | 9 | 2 | 196 | 136 | 21 | 19 | 17 | 311 | 142 | F |
Diaphorolepis wagneri |
|
- | - | 9 | 3 | 181 | 133 | 19 | 19 | 17 | 276 | 129 | M |
Diaphorolepis wagneri | MZUTI 3322 | - | 11 | 8 | 2 | 189 | 141 | 19 | 19 | 17 | 332 | 167 | F |
Diaphorolepis wagneri | MZUTI 3752 | - | 11 | 8 | 1 | 189 | 134 | 21 | 19 | 17 | 447 | 257 | M |
Diaphorolepis wagneri | MZUTI 3901 | - | 13 | 9 | 3 | 195 | 131 | 19 | 19 | 17 | 524 | 259 | F |
Diaphorolepis wagneri |
|
- | 13 | 9 | 2 | 191 | 137 | 21 | 19 | 17 | 307 | 146 | M |
Diaphorolepis wagneri |
|
25 | 12 | 9 | 2 | 193 | 98 | 21 | 19 | 17 | 484 | 200 | F |
Emmochliophis fugleri |
|
16 | 8 | 8 | 2 | 140 | 97 | 19 | 19 | 19 | - | - | M |
Emmochliophis miops | BMNH 1946.1.12.30 | 13 | 8 | 8 | 1 | 145 | 93 | 19 | 19 | 19 | 251 | 134 | F |
Eastern Andes | |||||||||||||
Synophis aff. bicolor | FHGO 9186 | - | 11 | 9 | 2 | 164 | 105 | 19 | 17 | 17 | 379 | 184 | M |
Synophis aff. bicolor | MZUTI 3529 | - | 11 | 8 | 2 | 163 | 106 | 19 | 19 | 17 | 407 | 202 | M |
Synophis aff. bicolor | MZUTI 4180 | - | 11 | 9 | 2 | 152 | 100 | 19 | 19 | 18 | 457 | 214 | M |
Synophis aff. bicolor |
|
24/27 | 11 | 9 | 2 | 160 | 103 | - | 19 | 17 | 529 | 235 | F |
Synophis aff. bicolor |
|
- | - | 8 | 2 | 161 | 105 | - | 19 | 17 | 535 | 230 | F |
Synophis aff. bicolor |
|
- | - | 8 | 2 | 166 | 106 | - | 19 | 17 | 153 | 61 | F |
Western Andes | |||||||||||||
Synophis aff. bicolor | BMNH 1940.2.30.31 | - | - | 8 | 2 | 162 | 118 | 21 | 19 | 17 | 408 | 241 | M |
Synophis aff. bicolor |
|
- | - | 8 | 2 | 166 | 100 | - | 19 | 17 | 186 | 80 | F |
Synophis aff. bicolor |
|
- | 11 | 9 | 2 | 164 | 116 | - | 19 | 17 | 367 | 208 | - |
Synophis aff. bicolor |
|
- | 11 | 8 | 2 | - | - | - | - | - | - | - | - |
Synophis aff. bicolor |
|
- | 11 | 8 | 2 | 160 | 96 | 21 | 19 | 17 | - | - | - |
Synophis aff. bicolor |
|
- | 10 | 8 | 2 | 165 | 105 | - | 19 | 17 | 144 | 66 | - |
Synophis aff. bicolor |
|
- | 10 | 8 | 2 | 162 | 122 | - | - | - | 257 | 147 | - |
Synophis cf. bicolor |
|
>23 | 12 | 8 | 2 | 193 | 127 | - | 19 | - | - | - | M |
Synophis cf. bicolor |
|
24 | 11 | 8 | 2 | 190 | 131 | 19 | 19 | 17 | - | - | - |
Synophis cf. bicolor | MLS2072 | - | 11/10 | 8 | 2 | 184 | 127 | - | 19 | 17 | 407 | 210 | M |
Synophis bicolor |
|
- | 9 | 8 | 2 | 174 | 138 | 19 | 17 | 17 | 361 | 236 | M |
Synophis bicolor |
|
- | 9 | 8 | 2 | 174 | 132 | 19 | 19 | 17 | 406 | 245 | M |
Synophis bicolor |
|
- | 9 | 8 | 2 | 183 | 135 | 19 | 17 | 17 | 376 | 233 | M |
Synophis bicolor |
|
16 | 9 | 8 | 2 | 180 | 136 | - | 19 | 17 | - | - | - |
Synophis bicolor | MZUTI 4175 | - | 11 | 8 | 2 | 174 | 143 | 19 | 19 | 17 | 365 | 245 | M |
Synophis bicolor |
|
- | 9 | 8 | 2 | 176 | 129 | - | 19 | 17 | - | - | - |
Synophis calamitus | KU 164208 | - | 9 | 8 | 1 | 163 | 125 | 21 | 19 | 17 | 142 | 73 | - |
Synophis calamitus | KU 197107 | - | 9 | 7 | 1 | 166 | 110 | 21 | 19 | 17 | 149 | 74 | F |
Synophis calamitus | MZUTI 3694 | - | 11 | 9 | 2 | 166 | 118 | 23 | 19 | 17 | 462 | 265 | M |
Synophis calamitus |
|
- | 9 | 8 | 1 | - | - | - | - | - | - | - | - |
Synophis lasallei |
|
24 | - | - | 2 | 154 | 112 | - | 21 | - | 292 | 158 | F |
Synophis lasallei |
|
- | - | - | 2 | 156 | 116 | - | 21 | - | 175 | 90 | M |
Synophis lasallei |
|
24 | - | - | 2 | 155 | 119 | - | 21 | - | 354 | 201 | M |
Synophis lasallei | FHGO 6489 | - | 11 | 8 | 2 | 147 | 111 | 23 | 21 | 21 | 153 | 86 | M |
Synophis lasallei | FHGO 8340 | - | 11 | 8 | 2 | 153 | 88 | 21 | 19 | 17 | 415 | 199 | M |
Synophis lasallei |
|
- | 11 | 7 | 1 | 147 | 115 | - | - | - | 412 | 206 | - |
Synophis lasallei |
|
- | 10 | 8 | 2 | 153 | 98 | 21 | 19 | 17 | 412 | 196 | F |
Synophis lasallei |
|
- | - | 8 | 2 | 154 | 118 | 21 | 21 | 17 | 306 | 145 | M |
Synophis lasallei |
|
- | 10 | 8 | 2 | 165 | 117 | 19 | 19 | 17 | 294 | 146 | M |
Synophis lasallei |
|
- | - | - | 2 | 144 | 101 | - | - | - | 300 | 170 | M |
Synophis lasallei | MZUTI 4181 | - | 11 | 9 | 2 | 156 | 29 | 21 | 21 | 19 | 272 | 42 | M |
Synophis lasallei |
|
- | 11 | 9 | 2 | 156 | 124 | - | 21 | - | 285 | 160 | M |
Synophis lasallei |
|
- | 11 | 8 | 2 | 153 | 126 | - | 22 | 20 | 360 | 200 | - |
Synophis lasallei |
|
- | 11 | 8 | 2 | 151 | 86 | 23 | 21 | 19 | 308 | 197 | M |
Synophis lasallei |
|
- | 11 | 8 | 2 | 151 | - | - | 21 | 19 | 270 | 150 | - |
Synophis plectovertebralis |
|
- | 8 | 8 | 1 | 144 | 91 | 19 | 19 | 17 | 212 | 100 | M |
Synophis plectovertebralis |
|
- | 7 | 7 | 1 | 147 | 79 | 19 | 19 | 17 | 196 | 76.5 | F |
Synophis zaheri | MZUTI 3353 | - | 8 | 8 | 2 | 166 | 112 | 19 | 19 | 17 | 351 | 184 | M |
Synophis zaheri | MZUTI 3355 | - | 9 | 8 | 2 | 169 | 111 | 19 | 19 | 17 | 372 | 194 | M |
We isolated total DNA from liver tissue or tail tips by proteinase K digestion in lysis buffer, followed by protein precipitation with guanidine thiocyanate solution and final DNA precipitation using isopropyl alcohol. We used the following pairs of primers to amplify and sequence four mitochondrial genes (12S, 16S, CYTB, ND4) and one nuclear locus (CMOS): Snake_12S_F (5’-AAACTGGGATTAGATACCCCACTAT-3’), Snake_12S_R (5’-GTRCGCTTACCWTGTTACGACT-3’), Snake_16S_F (5’-CGCCTGTTTAYCAAAAACAT-3’), and Snake_16S_R (5’-CCGGTCTGAACTCAGATCACGT-3’) from
We set up PCR reactions to a total volume of 25 µL containing MgCl2 2–3 mM, dNTPs 200 µM, 0.2 µM of each primer (0.8 µM in the case of ND4) and 1.25 U (16S and Cytb) or 0.625 U (ND4 and c-mos) of Taq DNA polymerase (Invitrogen). Thermocycling parameters consisted of an initial three-minute step at 94 °C; 25 to 30 cycles of 45–60 sec at 94 °C, 45 (16S and c-mos) or 60 (ND4 and Cytb) sec at 53–60 °C, 1 (16S and c-mos) or 2 (ND4 and Cytb) min at 72 °C; and a final extension of 7 min at 72 °C. We used 1.5% agarose gels to visualize the PCR products and QIAquick PCR purification Kit (QIAGEN) to remove unincorporated primers and dNTPs from every PCR reaction before they were sent to Macrogen Inc. for sequencing.
We combined these new data with the publically available sequences for Nothopsis and Xenopholis (
We then included all publically available dipsadine species sampled for these genes. This matrix contains 24% missing data (‘-’), but these have been shown not to have deleterious effects on taxon placement and support in previous analyses (e.g.,
Species in Diaphorolepis, Emmochliophis, and Synophis have traditionally been delimited using easily determined external morphological characters (
The overall topology and support (Figs
Species in Dipsadinae can be broadly grouped into a primarily North American clade (Contia to Carphophis when viewing Fig.
In agreement with previous results (
A strongly-supported clade comprising Diaphorolepis and Synophis represents the sister to the large, primarily Central American clade that also contains Nothopsis. Monophyly of Synophis with respect to Diaphorolepis is weakly supported. Within a weakly paraphyletic S. bicolor, there are three deeply divergent lineages, and the sampled specimen of S. lasallei. An apparently new species of Synophis is the strongly-supported sister lineage of S. calamitus. The species S. plectovertebralis remains unsampled in the molecular phylogeny. Although Emmochliophis is not sampled, we follow previous authors in assuming a close relationship with Diaphorolepis and Synophis, given their strong resemblance (
We seek here to only name clades associated Nothopsini that are strongly supported in our molecular phylogeny. Above the genus level, Nothopsini is not a natural group in any of its recent conformations. We place Nothopsis alone in Nothopsini Cope, 1871. We resurrect and re-delimit the tribe Diaphorolepidini Jenner, 1981 to include only Diaphorolepis, Emmochliophis, and Synophis. The genus Xenopholis is not strongly supported in any supra-generic group and remains incertae sedis in Dipsadinae (see
Our molecular and morphological data (Tables
Vouchered localities for specimens of Diaphorolepidini species examined or from literature. In general, localities are given verbatim as transcribed from the literature, museum records, or field notes. Co-ordinates represent georeferencing attempts from gazetteers under standard guidelines, though some variation from the exact collecting locality will inevitably be present. Similarly, elevations are taken from Google Earth, and may not exactly match the elevations as originally reported. Museum codes are given in
Species | Collection Number | Locality | Latitude | Longitude | Elev. |
---|---|---|---|---|---|
Diaphorolepis wagneri |
|
Panama Darien, Cerro Mali, in Serrania del Darien | 8.128557 | -77.253498 | 1268 |
Diaphorolepis wagneri |
|
Canandé, Ecuador | 0.529930 | -79.035410 | 596 |
Diaphorolepis wagneri | MZUTI 3322 | Milpe, Ecuador | 0.034890 | -78.867130 | 1076 |
Diaphorolepis wagneri | MZUTI 3901 | Mashpi Lodge, Ecuador | 0.164030 | -78.870730 | 1068 |
Diaphorolepis wagneri |
|
El Palmar, Canar, Ecuador | -2.533300 | -79.333300 | 325 |
Diaphorolepis wagneri |
|
Ecuador, Cotopaxi, Las Pampas | -0.348360 | -79.076010 | 1238 |
Diaphorolepis wagneri |
|
Ecuador, Pichincha, Tandapi | -0.415220 | -78.797280 | 1457 |
Diaphorolepis wagneri |
|
Ecuador, Cotopaxi, Pucayacu–Sigchos | -0.702730 | -79.056810 | 974 |
Diaphorolepis wagneri |
|
Imbabura Lita, Ecuador | 0.815270 | -78.388350 | 865 |
Diaphorolepis wagneri |
|
18km East of San Jose de Palmar, Colombia | 4.966667 | -76.233333 | 1546 |
Diaphorolepis wagneri |
|
Colombia, Cali, Pichinde, Farallones de Cali | 3.433400 | -76.616680 | 1614 |
Diaphorolepis wagneri |
|
Colombia, Pance, Camino a Corea, Pance, Farallones de Cali | 3.328340 | -76.638650 | 1632 |
Emmochliophis fugleri |
|
4 km. E Río Baba Bridge, 24 km. S Santo Domingo de los Colorados, Pichincha, Ecuador | -0.435562 | -79.246212 | 618 |
Emmochliophis miops | BMNH 1946.1.12.30 | Parambas (Imbabura), Ecuador | 0.805000 | -78.350833 | 1105 |
Eastern Andes | |||||
Synophis aff. bicolor | FHGO 9186 | Río Zopladora, Ecuador | -2.611510 | -78.472174 | 1677 |
Synophis aff. bicolor | KU 121341 | Ecuador, Pastaza, Mera | -1.457452 | -78.107976 | 1111 |
Synophis aff. bicolor | MZUTI 3529 | Wild Sumaco, Ecuador | -0.675700 | -77.601290 | 1463 |
Synophis aff. bicolor | MZUTI 4180 | El Genairo, Ecuador | -4.166181 | -78.94094 | 1212 |
Synophis aff. bicolor |
|
Ecuador, Napo-Pastaza, Abitagua | -1.383000 | -78.083000 | 1482 |
Western Andes | |||||
Synophis aff. bicolor | BMNH 1940.2.30.31 | Río Solaya, Ecuador | -0.010213 | -78.819510 | 1008 |
Synophis aff. bicolor |
|
Chimborazo, Naranjapata, Ecuador | -2.266667 | -79.083333 | 763 |
Synophis aff. bicolor |
|
Ecuador, Pichincha, Tandapi | -0.419803 | -78.801132 | 1714 |
Synophis aff. bicolor |
|
Cotopaxi: Naranjito, Bosque Integral Otonga | -0.417820 | -78.988030 | 1655 |
Synophis aff. bicolor |
|
Ecuador, Cotopaxi, Las Pampas | -0.348360 | -79.076010 | 1238 |
Synophis aff. bicolor |
|
Ecuador, Cotopaxi, San Francisco de Las Pampas | -0.440357 | -78.966629 | 1586 |
Synophis cf. bicolor |
|
Colombia, Dpto. Antioquia, Mpio. Amalfi, V. da La Manguita, Fca. La Esperanza | 6.978611 | -75.044444 | 1394 |
Synophis cf. bicolor |
|
Medellin, Cordillera Central, Colombia | 6.230833 | -75.590556 | 1497 |
Synophis bicolor |
|
Tobar Donoso, Ecuador | 1.189930 | -78.504130 | 229 |
Synophis bicolor |
|
Sendero Awa, Ecuador | 1.164400 | -78.507120 | 257 |
Synophis bicolor | MZUTI 4175 | Itapoa, Ecuador | 0.46411 | -79.15547 | 267 |
Synophis bicolor |
|
Ecuador, Esmeraldas, Canton San Lorenzo | 1.03212 | -78.613780 | 318 |
Synophis calamitus | KU 164208 | 9 km SE Tandayapa, Pichincha Province, Ecuador | -0.047404 | -78.632804 | 2169 |
Synophis calamitus | KU 197107 | 4 km SE Tandayapa, Pichincha Province, Ecuador | -0.012514 | -78.650697 | 1889 |
Synophis calamitus | MZUTI 3694 | Tambo Tanda, Ecuador | -0.020108 | -78.651012 | 2048 |
Synophis lasallei |
|
Ecuador, Napo-Pastaza, nr. Río Talin, headwaters of the Río Bobonaza | -1.466670 | -77.883300 | 948 |
Synophis lasallei | FHGO 6489 | Ceploa, Ecuador | -1.339063 | -77.670660 | 839 |
Synophis lasallei | FHGO 7770 | Cara del Indio, Ecuador | -3.575695 | -78.451020 | 1207 |
Synophis lasallei | FHGO 8340 | El Quimi, Ecuador | -3.571852 | -78.516598 | 752 |
Synophis lasallei |
|
Colombia, Meta, Pico Renjifo, Serrania de la Macarena | 2.476901 | -73.794852 | 520 |
Synophis lasallei | KU 164221 | 2 km SSW Río Reventador, Ecuador | -0.100000 | -77.600000 | 1479 |
Synophis lasallei |
|
Ecuador, Napo Prov., Inecel Station, Cascada San Rafael, Río Quijos | -0.103401 | -77.585487 | 1290 |
Synophis lasallei |
|
Paquisha Alto, Ecuador | -3.909518 | -78.487244 | 1660 |
Synophis lasallei |
|
El Pangui, Ecuador | -3.624502 | -78.586510 | 814 |
Synophis lasallei |
|
Puyo, Ecuador | -1.466780 | -77.983350 | 957 |
Synophis lasallei |
|
N of Alban, cen. Cundinamarca Dept., cen. Colombia | 4.883333 | -74.450000 | 1983 |
Synophis lasallei | MZUTI 4181 | Sacha Yaku, Ecuador | -1.407882 | -77.711092 | 974 |
Synophis lasallei |
|
Río Arajuno, headwaters of, tributary of Río Napo, Pastaza, Ecuador | -1.400000 | -77.883300 | 969 |
Synophis lasallei |
|
Río Siquino, tributary of Río Villano, Upper Curaray, Pastaza, Ecuador | -1.455303 | -77.714685 | 576 |
Synophis lasallei |
|
Río Bobonaza, headwaters of, Ecuador | -1.512156 | -77.833454 | 594 |
Synophis lasallei | WWL 977-978 | Colombia, Meta prov., Villavicencio | 4.150000 | -73.633333 | 539 |
Synophis plectovertebralis |
|
Haciendo San Pedro, 6km S El Queremal, Municipio Dagua, Valle del Cauca, Colombia | 3.483333 | -76.700000 | 1830 |
Synophis zaheri | MZUTI 3353 | Buenaventura Lodge, Ecuador | -3.647970 | -79.755070 | 874 |
Synophis zaheri | MZUTI 3355 | Buenaventura Lodge, Ecuador | -3.648820 | -79.756400 | 812 |
Summary of measured diagnostic characters (external meristic features) for diaphorolepidine species. These data are a summary of Table
Species | MT | IL | SL | PO | V | SC | D1 | D2 | D3 |
---|---|---|---|---|---|---|---|---|---|
Diaphorolepis laevis | 16 | 10 | 8–9 | 2 | 157 | 84 | 19 | 19 | 17 |
Diaphorolepis wagneri | 23–25 | 10–13 | 8–9 | 1–3 | 181–197 | 131–141 | 19–21 | 19 | 17 |
Emmochliophis fugleri | 16 | 8 | 8 | 2 | 140 | 97 | 19 | 19 | 19 |
Emmochliophis miops | 13 | 8 | 8 | 1 | 145 | 93 | 19 | 19 | 19 |
Synophis aff. bicolor | 24–27 | 10–11 | 8–9 | 2 | 152–166 | 96–122 | 19–21 | 17–19 | 17–18 |
Synophis cf. bicolor | 23–24 | 10–12 | 8 | 2 | 184–193 | 127–131 | 19 | 19 | 17 |
Synophis bicolor | 16 | 9–11 | 8 | 2 | 174–183 | 129–143 | 19 | 17–19 | 17 |
Synophis calamitus | – | 9–11 | 7–9 | 1–2 | 163–166 | 110–125 | 21–23 | 19 | 17 |
Synophis lasallei | 24 | 10–11 | 7–9 | 1–2 | 144–165 | 101–126 | 19–23 | 19–22 | 17–21 |
Synophis plectovertebralis | – | 7–8 | 7–8 | 1 | 144–147 | 79–91 | 19 | 19 | 17 |
Synophis zaheri | – | 8–9 | 8 | 2 | 166–169 | 111–112 | 19 | 19 | 17 |
First, the head scalation of Diaphorolepis wagneri has not been accurately characterized by most authors (see
In the case of Diaphorolepis wagneri, the postoculars can range from 1–3 (rather than 1–2), as illustrated by
In the case of Diaphorolepis laevis,
In the case of Synophis bicolor, the holotype (
These three populations (Chocóan, Colombian Andean, and Ecuadorean Andean; Figs
Finally, we report here on two specimens of Synophis aff. calamitus from low to middle elevations on the Pacific versant of the Andes in SW Ecuador. These are diagnosable from the species above based on numerous characters, and we here name them:
MZUTI 3353 (Fig.
MZUTI 3355 (Fig.
Named after the preeminent Brazilian herpetologist Hussam El-Dine Zaher, for his innumerable contributions to South American herpetology and snake systematics.
Synophis zaheri can be differentiated from Diaphorolepis by an unmodified vertebral scale row with a single weak keel (versus a laterally expanded vertebral scale row, bicarinate or smooth); from Emmochliophis by the presence of a loreal (versus absence); from S. bicolor by having 166–169 ventrals (versus 174–183) and 111–112 subcaudals (versus 129–143); from S. aff. bicolor by having 8 or 9 infralabials (versus 10 or 11) and lighter brown dorsal coloration in life (versus darker black); from S. cf. bicolor by having 166–169 ventrals (versus 184–193), 111–112 subcaudals (versus 127–131), and 8 or 9 infralabials (versus 10–12); from S. calamitus by having two postoculars (versus one typically) and internasals in contact (versus divided typically); from S. lasallei by having 166–169 ventrals (versus 144–165), 19 dorsal scale rows at midbody (versus 21–23 typically), 8 or 9 infralabials (versus 10 or 11), and by having the anteriormost dorsal scale rows smooth (versus keeled); and from S. plectrovertebralis by absence of a nuchal collar (versus presence) and two postoculars (versus one).
Small-sized snakes (351–372mm SVL, 184–194mm TL) with slender bodies and head distinct from neck. Eye large (>1/3 head height), bulbous, and black in life, with pupil not easily distinguishable from iris. Pupil round in preservative (though this may be an effect of fixation). Dorsum coloration grayish-brown with iridescent sheen in life and preservation, no light-colored nuchal collar in adults, and posterior supralabials mostly pigmented (>50%). Ventral coloration primarily bright yellowish-white, extending onto margins of ventral scales and supralabials. Posterior one-third of ventral surface anterior to vent becomes increasingly mottled, and ventral surface of tail color of dorsum. Squamation pattern includes 166–169 ventral scales, 111–112 subcaudals, 19-19-17 dorsal scale rows (scale-row reduction of 2 rows past midbody), anal single, no apical pits, mid-body dorsal scales with weak single keel (first few dorsal scale-rows smooth), vertebral scale row not enlarged, nuchal scales smooth, 8 supralabials, 8 or 9 infralabials, 2 postoculars, loreal present, nasal undivided, fused prefrontals, internasals in contact, and rostral concave. Condition of the vertebrae, which are heavily modified in Emmochliophis and Synophis (
In light of this new species and the updated material we have located and examined (Tables
Diaphorolepis Jan, 1863 (type genus by original designation)
Emmochliophis Fritts & Smith, 1969
Synophis Peracca, 1896
Apparently from the Greek diaphoros for “differentiated” and lepis for “scales,” likely referring to the enlarged vertebral scale row as compared to the rest of the dorsal scales.
A group of relatively small-sized (<550mm SVL) dipsadine snakes restricted to the Darien of Panama and northern Andes of South America with fused prefrontals and either an expanded vertebral scale row (Diaphorolepis) or expanded zygapophyses and neural spines in adults (Emmochliophis and Synophis).
The tribe name has also been spelled ‘Diaphorolepini’ by
Diaphorolepis laevis Werner, 1923
Diaphorolepis wagneri Jan, 1863 (type species by monotypy)
Apparently from the Greek diaphoros for “differentiated” and lepis for “scales,” likely referring to the enlarged vertebral scale row as compared to the rest of the dorsal scales.
Relatively small-sized (<550mm SVL) dipsadine snakes restricted to the Darien in Panama and northern Andes of South America, with 16–25 maxillary teeth, 10–13 infralabials, 8 or 9 supralabials, fused prefrontals, internasals in contact, loreal present, 1–3 postoculars, 157–197 ventrals, 84–141 subcaudals, dorsal scales in (19–21)-19-17 rows, and expanded vertebral scale row with weak to strong double keeling.
This genus was validly described by
Apparently from the Latin laevis for “smooth,” referring to the anterior dorsal scales.
Relatively small-sized snake (350mm SVL) with 10 infralabials, 8/9 supralabials, 2 postoculars, internasals in contact, fused prefrontals, loreal present, nuchal collar apparently present, 16/18 maxillary teeth, 157 ventrals, 84 subcaudals, 19-19-17 dorsal scale rows, vertebral scale row is enlarged, with single keels on lateral dorsal scale rows and double keels on enlarged vertebral scale row weak to absent anteriorly and weak posteriorly. Uniformly light-colored venter and dark-colored dorsum in preservative. Nothing is known of the hemipenes or vertebrae.
Known only from the type specimen. The original description states that the dorsal scales are smooth, but weak keels are evident throughout the posterior portion of the body. A specimen at Harvard, reportedly from Leticia, Amazonas, Colombia, bears the identification Diaphorolepis laevis (
Relatively small-sized snakes (276–524mm SVL) with 23–25 maxillary teeth, 10–13 infralabials, 8 or 9 supralabials, 1–3 postoculars with the lower occasionally resembling a subocular and the middle occasionally resembling a temporal, fused prefrontals, internasals in contact, loreal present, incomplete nuchal collar present in juveniles (MZUTI 3322) fading ontogenetically, 181–197 ventrals, 131–141 subcaudals, (19–21)-19-17 dorsal scale rows, strong keels present on dorsal scales, and enlarged, bicarinate vertebral scale row. Uniformly cream-colored venter and dark-brown to black dorsum. Lumbar vertebrae are constricted near the middle, zygapophyses and neural spines are not expanded. The hemipenis has been briefly described (
Most likely after Moritz Wagner, who collected the holotype (see
The re-description and neotype designation (
Emmochliophis fugleri Fritts & Smith, 1969 (type species by monotypy)
Emmochliophis miops (Boulenger, 1898)
From the Greek emmochlion for “a socket for a bar” and ophis for “snake,” referring to the unique interlocking vertebrae (
Relatively small-sized (~250mm SVL) terrestrial snakes restricted to the Pacific Andean slopes of NW Ecuador, with a small number (<17) of maxillary teeth, 8 supralabials, 8 infralabials, fused prefrontals, internasals in contact, loreal absent, fewer than 150 ventrals, fewer than 100 subcaudals, dorsal scales in 19 rows without reduction, trunk vertebrae with lateral expansion of the zygapophyses, and expanded zygapophyses forming a rod-and-groove mechanism in Emmochliophis fugleri, but not in E. miops.
Both species are known only from the types. The hemipenis of E. fugleri has been briefly described (
After Dr. Charles Fugler, who collected the holotype.
A terrestrial snake from the Pacific Andean slopes of NW Ecuador, diagnosable by 16 maxillary teeth, 8 infralabials, 8 supralabials, 2 postoculars, internasals in contact, loreal absent, nuchal collar absent, 140 ventrals, 97 subcaudals, dorsal scales in 19 rows without reduction, strong keels, and zygapophyses expanded laterally forming rod–and–bar assembly. Type locality is surrounded by banana plantations. Little else is known about the habits or habitat of the species.
Known only from the type specimen, a male, collected by C. Fugler in February 1966.
Synophis miops Boulenger, 1898
BMNH 1946.1.12.30, Paramba, Ecuador (=Parambas, Imbabura fide
None given by
Relatively small-sized (~250mm SVL) terrestrial snake from the Pacific Andean slopes of NW Ecuador, diagnosable by 13 maxillary teeth, 8 infralabials, 8 supralabials, 1 postocular, internasals in contact, loreal absent, nuchal collar present, 145 ventrals, 93 subcaudals, dorsal scales in 19 rows without reduction, strong keels, and lateral expansion of the zygapophyses. Type locality is humid subtropical lower montane forest. Little else is known about the habits or habitat of the species. Stomach of type specimen contains remains of a gymnophthalmid lizard (
Known only from the type specimen, a female, collected by W. F. H. Rosenberg in October 1897. The type specimen was re-described in great detail by
Synophis bicolor Peracca, 1896 (type species by monotypy)
Synophis calamitus Hillis, 1990
Synophis lasallei (Nicéforo-Maria, 1950)
Synophis plectovertebralis Sheil & Grant, 2001
Synophis zaheri Pyron, Guayasamin, Peñafiel, Bustamante, & Arteaga, 2015
None given by
Relatively small-sized (~300mm SVL) dipsadine snakes of the Andes and Chocó of Colombia and Ecuador, with 16–27 maxillary teeth, 7–11 infralabials, 7–9 supralabials, fused prefrontals, loreal present, 1 or 2 postoculars, 144–184 ventrals, 88–138 subcaudals, dorsal scales in (19–21)-(17–21)-(17–20) rows, neural spine expanded and flattened, laterally expanded zygapophyses, and hemipenes slightly bilobed, semicalyculate, and semicapitate, relatively stout and bulbous, covered in large spines or hooks.
On the basis of similar scale counts, but apparently without examining specimens,
None given by
Small-sized (~200–400mm SVL) dipsadine snakes of the Andes and Chocó of Colombia and Ecuador, diagnosable by 16–27 maxillary teeth, 9–12 infralabials, 8 or 9 supralabials, fused prefrontals, loreal present, 2 postoculars, 152–193 ventrals, 96–143 subcaudals, dorsal scales in (19–21)-(17–19)-(17–18) weakly keeled rows, neural spine expanded and flattened, laterally expanded zygapophyses, and hemipenes slightly bilobed, semicalyculate, and semicapitate, relatively stout and bulbous, covered in large spines or hooks. Populations of this species are found in both lowland Chocóan rainforest and Andean cloud forests. Individuals are often found in leaf litter or in bushes, active at night. One collection from the Pacific Andean slopes of Ecuador (
This is a species complex comprising at least three species-level taxa, which are distinct genetically, geographically, and morphologically (Figs
First are the Ecuadorean Andean highlands populations (Synophis aff. bicolor), which occur both on both the Pacific and Andean versants (~800–1700m). These are diagnosable by number of ventrals (152–166), subcaudals (96–122), infralabials (10 or 11), and supralabials (8 or 9), in combination. One individual (
Second are the Chocóan populations from NW Ecuador, and presumably SW Colombia (~200–300m). These match the holotype in having 174–183 ventrals, 129–138 subcaudals, 8 supralabials, and typically 9 infralabials, though one specimen from further south (MZUTI 4175) has 11. We revise the type locality of Synophis bicolor by subsequent restriction (sensu
Third are the Colombian Andean highland populations (~1400–1500m; see
KU 197107, 4 km SE Tandayapa, Pichincha Province, Ecuador.
Paratype. KU 164208, 9km SE Tandayapa, Pichincha Province, Ecuador.
From the Latin for “calamity,” referring to accidents that befell the original collectors (
A group of relatively small (~450mm SVL) dipsadine snakes of the cloud forests of the Pacific versant of the Andean highlands of Ecuador diagnosable by 9–11 infralabials, 7–9 supralabials, fused prefrontals, internasals separated, loreal present, 1 or 2 postoculars, 163–166 ventrals, 110–125 subcaudals, dorsal scales in (21–23)-19-17 weakly keeled rows, neural spine expanded and flattened, and laterally expanded zygapophyses. Known from middle to high-elevation (~1900–2200m) cloud forests north of the Río Toachi. Nothing is known of diet or reproduction.
A detailed description was also provided by
Diaphorolepis lasallei Nicéforo-Maria, 1950
After the Instituto de La Salle, in Bogotá (
Smaller (~300mm SVL) dipsadine snakes of the Amazonian versant of the Andes of Ecuador and Colombia, diagnosable by 24 maxillary teeth, 10 or 11 infralabials, 7–9 supralabials, fused prefrontals, internasals in contact, loreal present, 1 or 2 postoculars, nuchal collar absent, 144–165 ventrals, 101–126 subcaudals, dorsal scales in (19–23)-(19–22)-(17–21) strongly keeled rows even on head and neck, venter dark in some populations, neural spines expanded and flattened, and laterally expanded zygapophyses. Known from low to high elevations (~500–2000m) along the Amazonian versant of the Andes from central Colombia to central Ecuador. Nothing is known of diet or reproduction.
The hemipenes are very similar to both Diaphorolepis and S. bicolor (
From the Latin plecto- for “braided” or “woven” and veretbralis for “vertebrae,” referring to the appearance of the interlocking zygapophyses viewed from above (
Relatively small (~200mm SVL) dipsadine snakes of the Pacific versant of the Andean Highlands of W Colombia, diagnosable by 24 maxillary teeth, 7 or 8 infralabials, 7 or 8 supralabials, fused prefrontals, internasals in contact, loreal present, 1 postocular, nuchal collar present, 144–147 ventrals, 79–91 subcaudals, dorsal scales in 19-19-17 weakly keeled rows, neural spines expanded and flattened, and laterally expanded zygapophyses forming a partially interlocking complex. The type locality is a middle elevation (~1800m) cloud forest. Both known specimens were collected in moist leaf litter; one was active at night. The stomach of the holotype contained a Ptychoglossus stenolepis (Sauria: Gymnophthalmidae).
Known only from the holotype and paratype (apparently juveniles), though other material has apparently been collected in Colombia, near the type locality (T. Grant and E. Meneses-Pelayo, pers. comm.). The hemipenes have not been examined. A more detailed description of the two specimens is provided by
Given our restriction of the name, we also provide the following re-description of the re-delimited Nothopsini. Note that we have not performed a comparative examination of a large series of preserved material, and these data are summarized from the literature (
GenusNothopsis Cope, 1871 (type genus by monotypy)
Nothopsis rugosus Cope, 1871
Nothopsis affinis Boulenger, 1895 (Holotype BMNH 1946.1.15.62, “Salidero, NW Ecuador, 350ft”) [subjective junior synonym of N. rugosus fide Dunn & Dowling 1957]
Nothopsis torresi Taylor, 1951 (Holotype KU 28710, “’Morehead’ Finca, 5 miles southwest of Turrialba, Costa Rica”) [subjective junior synonym of N. rugosus fide Dunn & Dowling 1957]
From the Greek nothos for “bastard” and opsis for “appearance,” with
A relatively small-sized (<350mm SVL) dipsadine snake, ranging in Central and South America from Honduras to Colombia and Ecuador, in lowland and middle-elevation rainforests, 250-900m, distinguishable from nearly all other similar or related snakes in the area by the rugose, granular nature of the dorsal scales, in particular lacking differentiation of the cephalic scales with the exception of well-defined internasals and poorly defined frontal and parietals, which are separated by rows of irregular, undifferentiated scales. Color pattern consists of irregular and poorly defined blotches of blackish or light, dark, and yellowish brown. With respect to the characters described here for diaphorolepidine species, Nothopsis rugosus typically exhibits 19–21 maxillary teeth, 9–13 supralabials, 11–16 infralabials, 149–162 ventrals, 81–112 subcaudals, dorsal scales in (24–30)-(26–30)-(22–26) rows, SVL of 151–320mm, and tail length of 61–133mm (see
This taxon has historically been divided up into as many as three species (see
Corroborating previous results, we find that current supra-generic classification in Dipsadinae does not accurately reflect the phylogeny and describe natural groups in many cases (
In particular, we find that Nothopsini is not monophyletic as historically defined, but that Nothopsis is strongly nested within a primarily Central American clade, with Imantodes and Leptodeira. We restrict tribe Nothopsini Cope, 1871 to Nothopsis. We resurrect and re-delimit Diaphorolepidini Jenner, 1981 to include only Diaphorolepis, Emmochliophis, and Synophis. Whereas Emmochliophis remains unsampled in the molecular phylogeny, it appears to be the sister-taxon of Synophis based on morphological data (
Larger sample sizes reveal expanded ranges of diagnostic characters previously used to delimit species in Diaphorolepidini. These will hopefully assist future researchers in describing new taxa, and re-delimiting species boundaries. In particular, both Synophis bicolor and S. lasallaei may comprise multiple distinct species. Additional DNA sequencing and meristic and mensural measurements of more specimens should help clarify taxonomic boundaries.
In the case of Synophis bicolor, the Chocóan populations in Ecuador and presumably nearby Colombia match the description of the holotype, and thus likely represent the source of the original specimen, which remains to be re-described in detail. Contrastingly, highland populations in the Andean Highlands of Ecuador and Colombia are morphologically and genetically distinct, and both likely represent undescribed species. In the Ecuadorean Andes, populations of this taxon occur on both the Pacific and Amazonian versants, which may also be distinct from each other. The sampled specimen of S. lasallei is weakly nested within the sampled specimens of S. bicolor. A wide range of squamation and color pattern is observed in S. lasallei, which may represent cryptic species, as well as potential mis-identification of examined specimens. Finally, a cloud-forest population from the Pacific versant in SW Ecuador represents a new species described here as S. zaheri, allied to S. calamitus. Understanding the geographic distribution and genetic diversity in these taxa will require additional genetic sampling, which is hampered by the rarity of these species.
One of the most distinctive features of diaphorolepidine species is the highly modified condition of the vertebrae, in which the prezygapophyses and postzygapophyses are broadly expanded, forming ridges, and occasionally interlocking (
Another possible source of information for delimiting species are the hemipenes. The organs are highly similar in Diaphorolepis and most Synophis species (
Higher-level taxonomy in Dipsadinae is still partially unresolved, and many genera and supra-generic groups are either non-monophyletic, or poorly supported and weakly placed. This includes Nothopsini Cope, 1871, which must be restricted to Nothopsis, if it is used at all. We resurrect and re-delimit Diaphorolepidini Jenner, 1981 to include only Diaphorolepis, Emmochliophis, and Synophis. The genus Xenopholis remains Dipsadinaeincertae sedis. Revised and expanded diagnoses in Diaphorolepidini support the distinctiveness of all currently recognized taxa. Cryptic species are likely present in S. bicolor and S. lasallei. A new population from the cloud forest of SW Ecuador is morphologically and genetically distinct, and we here name it S. zaheri. We hope that these data will provide a robust platform for future researchers to examine species boundaries in Diaphorolepidini, as additional work clearly remains to be done. This is hampered, however, by the extreme rarity of these species.
This research was funded in part by the George Washington University (including a grant of time from the Colonial One
Species | 12S | 16S | CYTB | ND4 | CMOS |
---|---|---|---|---|---|
Adelphicos quadrivirgatum | - | - | GQ895853 | - | GQ895796 |
Alsophis antiguae | AF158455 | AF158524 | - | - | - |
Alsophis antillensis | FJ416691 | FJ416702 | FJ416726 | FJ416800 | - |
Alsophis manselli | - | AF158528 | FJ416727 | FJ416801 | - |
Alsophis rijgersmaei | FJ416697 | FJ416708 | FJ416729 | FJ416803 | - |
Alsophis rufiventris | FJ416698 | FJ416709 | FJ416730 | FJ416804 | - |
Alsophis sajdaki | - | - | FJ416731 | FJ416805 | - |
Alsophis sibonius | FJ416692 | FJ416703 | FJ416728 | FJ416802 | - |
Amastridium sapperi | - | - | GQ334479 | GQ334580 | - |
Apostolepis albicollaris | JQ598793 | JQ598856 | - | - | JQ598965 |
Apostolepis assimilis | GQ457781 | GQ457724 | - | - | GQ457843 |
Apostolepis cearensis | JQ598794 | JQ598857 | - | - | JQ598966 |
Apostolepis dimidiata | GQ457782 | GQ457725 | JQ598917 | - | GQ457844 |
Apostolepis flavotorquata | JQ598795 | JQ598858 | GQ895854 | - | GQ895798 |
Arrhyton dolichura | AF158438 | AF158507 | FJ416721 | FJ416795 | - |
Arrhyton procerum | AF158452 | AF158521 | FJ416723 | FJ416797 | - |
Arrhyton redimitum | AF158439 | AF158508 | FJ416720 | FJ416794 | - |
Arrhyton supernum | AF158436 | AF158505 | FJ416718 | FJ416792 | - |
Arrhyton taeniatum | AF158453 | AF158522 | FJ416717 | FJ416791 | - |
Arrhyton tanyplectum | AF158446 | AF158516 | FJ416722 | FJ416796 | - |
Arrhyton vittatum | AF158437 | AF158506 | FJ416719 | FJ416793 | - |
Atractus aff. iridescens MZUTI4122 | - | KT944037 | KT944049 | KT944056 | - |
Atractus albuquerquei | GQ457783 | GQ457726 | JQ598918 | - | GQ457845 |
Atractus badius | AF158425 | AF158485 | - | - | - |
Atractus duboisi MZUTI62 | - | KT944041 | - | KT944059 | - |
Atractus dunni MZUTI2650 | - | KT944038 | KT944050 | KT944057 | - |
Atractus elaps | - | - | EF078536 | EF078584 | - |
Atractus flammigerus | AF158402 | AF158471 | - | - | - |
Atractus gigas MZUTI3286 | - | KT944043 | KT944053 | KT944061 | - |
Atractus iridescens MZUTI3758 | - | - | KT944052 | - | - |
Atractus iridescens MZUTI3759 | - | KT944039 | KT944051 | KT944058 | - |
Atractus major ANF1545 | - | KT944045 | - | - | - |
Atractus resplendens MZUTI3996 | KT944036 | KT944042 | KT944055 | KT944060 | - |
Atractus reticulatus | JQ598798 | JQ598886 | - | - | JQ598970 |
Atractus schach | JQ598799 | AF158486 | - | - | JQ598971 |
Atractus sp. MZUTI4178 | - | KT944040 | - | - | KT944066 |
Atractus trihedrurus | GQ457784 | GQ457727 | JQ598919 | - | GQ457846 |
Atractus typhon MZUTI3284 | - | KT944044 | KT944054 | KT944062 | - |
Atractus wagleri | - | - | GQ334480 | GQ334581 | - |
Atractus zebrinus | JQ598800 | JQ598861 | - | - | JQ598972 |
Atractus zidoki | AF158426 | AF158487 | - | - | - |
Boiruna maculata | GQ457785 | JQ598862 | GQ895855 | - | GQ895799 |
Borikenophis portoricensis | FJ416696 | AF158517 | AF471085 | U49308 | AF471126 |
Borikenophis variegatus | FJ416700 | FJ416711 | FJ416734 | FJ416808 | - |
Caaeteboia amarali | GQ457807 | GQ457747 | JQ598921 | - | GQ457867 |
Calamodontophis paucidens | GQ457786 | GQ457728 | - | - | GQ457848 |
Caraiba andreae | AF158442 | AF158511 | FJ416743 | FJ416817 | - |
Carphophis amoenus | AY577013 | AY577022 | AF471067 | - | DQ112082 |
Carphophis vermis | - | - | KP765656 | - | - |
Clelia clelia | AF158403 | AF158472 | - | - | JQ598973 |
Coluber constrictor | L01765 | L01770 | EU180432 | AY487040 | AY486937 |
Coniophanes fissidens | - | - | EF078538 | EF078586 | - |
Conophis lineatus | GQ457788 | JQ598865 | JQ598924 | - | JQ598975 |
Conophis vittatus | - | - | GQ895861 | - | GQ895805 |
Contia longicaudae | - | - | GU112407 | GU112427 | - |
Contia tenuis | AY577021 | AY577030 | GU112401 | AF402658 | AF471134 |
Crisantophis nevermanni | GU018152 | GU018169 | - | - | - |
Cryophis hallbergi | - | - | GQ895863 | EF078544 | GQ895807 |
Cubophis cantherigerus | AF158405 | AF158475 | AF544669 | FJ416818 | AF544694 |
Cubophis caymanus | FJ416693 | FJ416704 | FJ416745 | FJ416820 | - |
Cubophis fuscicauda | FJ416695 | FJ416706 | FJ416747 | FJ416822 | - |
Cubophis ruttyi | FJ416699 | FJ416710 | FJ416746 | FJ416821 | - |
Cubophis vudii | AF158443 | AF158512 | FJ416744 | FJ416819 | - |
Diadophis punctatus | AF544765 | AY577024 | EU193700 | EU193987 | AF471122 |
Diaphorolepis wagneri MZUTI3322 | - | KR814752 | - | KR814775 | KR814764 |
Diaphorolepis wagneri MZUTI3752 | - | KR814753 | - | KR814777 | KR814766 |
Diaphorolepis wagneri MZUTI3901 | - | KR814754 | - | KR814778 | KR814767 |
Dipsas albifrons | JQ598803 | JQ598866 | JQ598925 | - | - |
Dipsas articulata | JQ598804 | JQ598867 | - | - | - |
Dipsas catesbyi | JQ598805 | Z46496 | JQ598926 | EF078585 | JQ598977 |
Dipsas indica | GQ457789 | GQ457730 | - | - | GQ457850 |
Dipsas neivai | GQ457790 | GQ457731 | - | - | GQ457851 |
Dipsas pratti | - | - | GQ334482 | GQ334583 | - |
Dipsas variegata | AF158406 | AF158476 | - | - | - |
Drepanoides anomalus | GQ457791 | GQ457732 | GQ895866 | - | GQ895810 |
Echinanthera melanostigma | JQ598806 | GU018174 | JQ598928 | - | - |
Echinanthera undulata | JQ598807 | JQ598870 | JQ598929 | - | JQ598978 |
Elapomorphus quinquelineatus | GQ457794 | GQ457735 | JQ598930 | - | GQ457855 |
Erythrolamprus aesculapii | GQ457795 | GQ457736 | GQ895871 | - | GQ895814 |
Erythrolamprus almadensis | JQ598808 | JQ598871 | - | - | JQ598979 |
Erythrolamprus atraventer | JQ598809 | JQ598872 | - | - | JQ598980 |
Erythrolamprus breviceps | AF158464 | AF158533 | - | - | - |
Erythrolamprus ceii | JQ598810 | JQ598873 | - | - | JQ598981 |
Erythrolamprus cursor | JX905310 | JX905314 | - | - | - |
Erythrolamprus epinephelus | GU018158 | GU018176 | - | - | - |
Erythrolamprus jaegeri | GQ457809 | GQ457749 | - | - | GQ457869 |
Erythrolamprus juliae | AF158445 | AF158514 | - | - | - |
Erythrolamprus miliaris | JQ598811 | AF158480 | JQ598931 | - | JQ598982 |
Erythrolamprus mimus | GU018157 | GU018175 | - | - | - |
Erythrolamprus poecilogyrus | JQ598812 | JQ598875 | - | - | - |
Erythrolamprus pygmaeus | GU018154 | GU018172 | - | - | - |
Erythrolamprus reginae | JQ598813 | JQ598876 | - | - | JQ598983 |
Erythrolamprus typhlus | GQ457811 | GQ457751 | - | - | GQ457871 |
Farancia abacura | Z46467 | Z46491 | U69832 | DQ902307 | AF471141 |
Farancia erytrogramma | AY577017 | AY577026 | KP765663 | - | - |
Geophis carinosus | - | - | GQ895872 | - | GQ895815 |
Geophis dubius | - | - | KC917319 | - | - |
Geophis godmani | JQ598814 | JQ598877 | JQ598932 | - | - |
Geophis juarezi | - | - | KC917315 | - | - |
Geophis latifrontalis | - | - | KC917322 | - | - |
Geophis occabus | - | - | KC917323 | - | - |
Geophis turbidus | - | - | KC917321 | - | - |
Gomesophis brasiliensis | GQ457796 | GQ457737 | - | - | - |
Haitiophis anomalus | FJ666091 | FJ666092 | - | - | - |
Helicops angulatus | GQ457797 | GQ457738 | AF471037 | - | AF471160 |
Helicops carinicaudus | JQ598815 | - | - | - | JQ598984 |
Helicops gomesi | GQ457798 | GQ457739 | - | - | GQ457858 |
Helicops hagmanni | JQ598816 | JQ598878 | - | - | JQ598985 |
Helicops infrataeniatus | GQ457799 | GQ457740 | JQ598933 | - | GQ457859 |
Heterodon nasicus | GQ457801 | AY577027 | KP765664 | - | GQ457861 |
Heterodon platirhinos | AY577019 | AY577028 | GU112412 | AF402659 | JQ598986 |
Heterodon simus | AY577020 | AY577029 | AF217840 | DQ902310 | AF471142 |
Hydrodynastes bicinctus | GQ457802 | GQ457742 | JQ598935 | - | GQ457862 |
Hydrodynastes gigas | GQ457803 | GQ457743 | GQ895873 | - | GQ895816 |
Hydromorphus concolor | - | - | GQ895874 | - | GQ895817 |
Hydrops triangularis | GQ457804 | GQ457744 | AF471039 | - | AF471158 |
Hypsiglena affinis | - | - | GU353241 | EU363055 | - |
Hypsiglena chlorophaea | EU728577 | EU728577 | EU728577 | EU728577 | - |
Hypsiglena jani | EU728592 | EU728592 | EU728592 | EU728592 | - |
Hypsiglena ochrorhyncha | EU728578 | EU728578 | EU728578 | EU728578 | - |
Hypsiglena slevini | EU728584 | EU728584 | EU728584 | EU728584 | - |
Hypsiglena tanzeri | - | - | EU728588 | EU363044 | - |
Hypsiglena torquata | EU728591 | EU728591 | EU728591 | EU728591 | AF471159 |
Hypsirhynchus callilaemus | AF158440 | AF158509 | FJ416737 | FJ416811 | - |
Hypsirhynchus ferox | AF158447 | AF158515 | GQ895875 | FJ416816 | GQ895818 |
Hypsirhynchus funereus | AF158451 | AF158520 | FJ416739 | FJ416813 | - |
Hypsirhynchus parvifrons | AF158441 | AF158510 | FJ416740 | FJ416814 | - |
Hypsirhynchus polylepis | AF158450 | AF158519 | FJ416738 | FJ416812 | - |
Hypsirhynchus scalaris | AF158449 | AF158518 | FJ416741 | FJ416815 | - |
Ialtris dorsalis | AF158456 | AF158525 | FJ416735 | FJ416809 | - |
Ialtris haetianus | AF158458 | AF158527 | FJ416736 | FJ416810 | - |
Imantodes cenchoa | EU728586 | EU728586 | EU728586 | EU728586 | GQ457865 |
Imantodes chocoensis | - | - | KC176250 | - | - |
Imantodes gemmistratus | - | - | GQ334487 | EF078557 | - |
Imantodes inornatus | - | - | GQ334489 | EF078559 | - |
Imantodes lentiferus | AF158463 | AF158532 | KC176252 | EF078561 | - |
Leptodeira annulata | GQ457806 | GQ457746 | FJ416713 | FJ416787 | AF544690 |
Leptodeira bakeri | - | - | GQ334518 | GQ334618 | - |
Leptodeira frenata | - | - | EF078532 | EF078580 | - |
Leptodeira maculata | - | - | GQ334524 | GQ334623 | - |
Leptodeira nigrofasciata | - | - | GQ334526 | EF078581 | - |
Leptodeira polysticta | EU728590 | EU728590 | EU728590 | EU728590 | - |
Leptodeira punctata | - | - | EF078530 | EF078577 | - |
Leptodeira rubricata | - | - | GQ334527 | GQ334631 | - |
Leptodeira septentrionalis | GU018148 | GU018163 | KC176243 | KC176255 | - |
Leptodeira splendida | - | - | EF078521 | EF078569 | - |
Leptodeira uribei | - | - | EF078531 | EF078579 | - |
Lygophis anomalus | JQ598817 | JQ598879 | - | - | - |
Lygophis elegantissimus | GQ457808 | GQ457748 | - | - | GQ457868 |
Lygophis flavifrenatus | JQ598818 | JQ598880 | - | - | - |
Lygophis lineatus | - | - | - | - | DQ469789 |
Lygophis meridionalis | GQ457810 | GQ457750 | - | - | GQ457870 |
Lygophis paucidens | JQ598819 | - | - | - | JQ598987 |
Magliophis exiguum | FJ416694 | AF158526 | AF471071 | FJ416798 | AF471117 |
Magliophis stahli | - | - | FJ416725 | FJ416799 | - |
Manolepis putnami | JQ598820 | JQ598881 | JQ598936 | - | JQ598988 |
Mussurana bicolor | GQ457787 | GQ457729 | - | - | GQ457849 |
Ninia atrata | GQ457814 | JQ598882 | JQ598937 | GQ334659 | GQ457874 |
Nothopsis rugosus ASL493 | GU018159 | GU018177 | - | - | - |
Nothopsis rugosus MZUTI3682 | - | KR814760 | KR814770 | KR814779 | KR814768 |
Oxyrhopus clathratus | GQ457815 | GQ457754 | - | - | GQ457875 |
Oxyrhopus formosus | JQ598821 | AF158482 | - | - | - |
Oxyrhopus guibei | JQ598822 | JQ627291 | JQ598938 | - | JQ598989 |
Oxyrhopus melanogenys | JQ598823 | AF158489 | - | - | JQ598990 |
Oxyrhopus petolarius | GU018144 | GU018170 | GQ334554 | GQ334660 | - |
Oxyrhopus rhombifer | GQ457816 | GQ457755 | - | - | GQ457876 |
Oxyrhopus trigeminus | JQ598824 | JQ598884 | JQ598939 | - | - |
Paraphimophis rusticus | JQ598802 | JQ598864 | JQ598923 | - | JQ598974 |
Phalotris bilineatus | JQ598827 | JQ598887 | JQ598943 | - | - |
Phalotris lativittatus | JQ598825 | JQ598885 | - | - | JQ598991 |
Phalotris lemniscatus | GQ457817 | GQ457756 | JQ598941 | - | GQ457877 |
Phalotris mertensi | JQ598826 | - | - | - | - |
Phalotris nasutus | GQ457818 | GQ457757 | GQ895880 | - | GQ895822 |
Philodryas aestiva | GQ457819 | GQ457758 | - | - | GQ457879 |
Philodryas agassizii | GQ457823 | GQ457762 | GQ895883 | - | GQ457883 |
Philodryas argentea | GQ457842 | GQ457780 | JQ598944 | - | GQ457899 |
Philodryas baroni | JQ598828 | JQ598888 | - | - | - |
Philodryas georgeboulengeri | - | - | GQ895898 | - | GQ895838 |
Philodryas mattogrossensis | GQ457820 | GQ457759 | - | - | GQ457880 |
Philodryas nattereri | JQ598829 | JQ598889 | AF236806 | - | JQ598992 |
Philodryas olfersii | JQ598830 | AF158484 | JQ598945 | - | JQ598993 |
Philodryas patagoniensis | GQ457821 | JQ627296 | AF236808 | - | GQ457881 |
Philodryas psammophidea | GU018149 | GU018168 | - | - | - |
Philodryas viridissima | AF158419 | AF158474 | AF236807 | - | - |
Phimophis guerini | GQ457822 | GQ457761 | - | - | GQ457882 |
Pseudalsophis dorsalis | JQ598832 | JQ598892 | JQ598946 | - | JQ598994 |
Pseudalsophis elegans | AF158401 | AF158470 | JQ598947 | - | JQ598995 |
Pseudoboa coronata | GQ457824 | GQ457763 | - | - | GQ457884 |
Pseudoboa neuwiedii | AF158423 | AF158490 | GQ895884 | - | GQ895825 |
Pseudoboa nigra | AF544775 | GQ457764 | JQ598948 | - | AF544729 |
Pseudoeryx plicatilis | GQ457826 | GQ457765 | GQ895885 | - | GQ895826 |
Pseudoleptodeira latifasciata | EU728579 | EU728579 | EU728579 | EU728579 | - |
Pseudotomodon trigonatus | GQ457827 | GQ457766 | - | - | GQ457887 |
Psomophis genimaculatus | GQ457828 | GQ457767 | - | - | GQ457888 |
Psomophis joberti | GQ457829 | GQ457768 | GQ895887 | - | GQ895828 |
Psomophis obtusus | JQ598836 | JQ598896 | - | - | - |
Ptychophis flavovirgatus | GQ457830 | GQ457769 | - | - | GQ457890 |
Rhachidelus brazili | JQ598837 | JQ598897 | JQ598952 | - | - |
Rhadinaea flavilata | - | - | AF471078 | - | AF471152 |
Rhadinaea fulvivittis | - | - | EF078539 | EF078587 | - |
Rodriguesophis iglesiasi | JQ598831 | JQ598891 | GQ895881 | - | GQ895823 |
Sibon nebulatus | EU728583 | EU728583 | EU728583 | EU728583 | AF544736 |
Sibon noalamina | - | KP209376 | - | - | - |
Sibynomorphus mikanii | GQ457832 | JQ627297 | JQ598954 | - | GQ457892 |
Sibynomorphus neuwiedi | JQ598838 | JQ598898 | - | - | - |
Sibynomorphus turgidus | JQ598839 | JQ598899 | - | - | - |
Sibynomorphus ventrimaculatus | JQ598840 | JQ598900 | - | - | JQ598997 |
Siphlophis cervinus | JQ598841 | JQ598901 | GQ895888 | - | JQ598998 |
Siphlophis compressus | GQ457833 | GQ457772 | - | - | GQ457893 |
Siphlophis longicaudatus | JQ598842 | JQ598902 | - | - | JQ598999 |
Siphlophis pulcher | GQ457834 | GQ457773 | JQ598955 | - | GQ457894 |
Sordellina punctata | JQ598843 | JQ598903 | JQ598956 | - | JQ599000 |
Stichophanes ningshaanensis | KJ719252 | KJ719252 | KJ719252 | KJ719252 | KJ638718 |
Synophis bicolor MZUTI4180 | - | KT944048 | - | KT944065 | KT944069 |
Synophis bicolor MHUA14577 | KR814751 | KR814758 | KR814773 | - | KR814769 |
Synophis bicolor MZUTI3529 | - | KR814759 | KR814771 | KR814780 | KR814762 |
Synophis bicolor MZUTI4175 | - | KT944046 | - | KT944063 | KT944067 |
Synophis bicolor |
- | - | JX398697 | JX398557 | - |
Synophis calamitus KU197107 | KR814622 | KR814640 | KR814697 | KR814711 | KR814663 |
Synophis calamitus MZUTI3694 | - | KR814755 | KR814772 | KR814774 | KR814765 |
Synophis lasallei MZUTI4181 | - | KT944047 | - | KT944064 | KT944068 |
Synophis zaheri MZUTI3353 | - | KR814756 | - | KR814776 | KR814761 |
Synophis zaheri MZUTI3355 | - | KR814757 | - | KR814781 | KR814763 |
Tachymenis peruviana | GQ457835 | GQ457774 | - | - | GQ457895 |
Taeniophallus affinis | JQ598844 | JQ598905 | JQ598957 | - | GQ457853 |
Taeniophallus brevirostris | GQ457793 | GQ457734 | JQ598958 | - | GQ457854 |
Taeniophallus nicagus | JQ598845 | JQ598906 | - | - | JQ599001 |
Tantalophis discolor | - | - | EF078541 | EF078589 | - |
Thalesius viridis | AF158468 | AF158538 | - | - | - |
Thamnodynastes hypoconia | JQ598846 | - | - | - | - |
Thamnodynastes lanei | GQ457836 | GQ457775 | - | - | - |
Thamnodynastes pallidus | GU018155 | GU018166 | - | - | - |
Thamnodynastes rutilus | GQ457837 | GQ457776 | - | - | GQ457896 |
Thamnodynastes strigatus | JQ598847 | JQ598907 | JQ598959 | - | - |
Thermophis baileyi | - | - | EU864148 | KF595097 | EU496922 |
Thermophis zhaoermii | GQ166168 | GQ166168 | GQ166168 | GQ166168 | KF514882 |
Tomodon dorsatum | GQ457838 | GQ457777 | GQ895892 | - | GQ895833 |
Tretanorhinus nigroluteus | - | - | GQ895893 | - | GQ895834 |
Trimetopon gracile | GU018160 | GU018178 | - | - | - |
Tropidodipsas sartorii | - | - | EF078540 | EF078588 | - |
Tropidodryas serra | JQ598848 | JQ598908 | JQ598961 | - | - |
Tropidodryas striaticeps | GQ457839 | GQ457778 | AF236811 | - | - |
Uromacer catesbyi | AF158454 | AF158523 | FJ416714 | FJ416788 | - |
Uromacer frenatus | AF158444 | AF158513 | FJ416715 | FJ416789 | - |
Uromacer oxyrhynchus | FJ416701 | FJ416712 | FJ416716 | FJ416790 | - |
Xenodon dorbignyi | GQ457812 | GQ457752 | - | - | GQ457872 |
Xenodon guentheri | JQ598849 | JQ598909 | - | - | - |
Xenodon histricus | GQ457813 | GQ457753 | JQ598962 | - | GQ457873 |
Xenodon matogrossensis | JQ598850 | JQ598910 | - | - | - |
Xenodon merremi | GQ457840 | JQ598911 | JQ598963 | - | GQ457898 |
Xenodon nattereri | JQ598851 | JQ598912 | - | - | - |
Xenodon neuwiedii | GQ457841 | GQ457779 | AF236814 | - | - |
Xenodon pulcher | JQ598852 | JQ598913 | - | - | - |
Xenodon semicinctus | GU018156 | GU018173 | GQ895877 | - | - |
Xenodon severus | JQ598853 | Z46474 | JQ598964 | - | - |
Xenopholis scalaris GFM825 | - | JQ598915 | - | - | - |
Xenopholis scalaris JPV | GU018145 | GU018164 | - | - | - |
Xenopholis scalaris KU222204 | - | - | GQ895897 | - | GQ895837 |
Xenopholis scalaris WED57797 | JQ598854 | - | - | - | JQ599002 |
Xenopholis undulatus R6955 | JQ598855 | JQ598916 | - | - | JQ599003 |